Gcaud8521.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8521.t1
Unique NameGcaud8521.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length259
Homology
BLAST of Gcaud8521.t1 vs. uniprot
Match: A0A2V3IG55_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG55_9FLOR)

HSP 1 Score: 279 bits (714), Expect = 1.840e-91
Identity = 135/243 (55.56%), Postives = 177/243 (72.84%), Query Frame = 0
Query:    8 YVLSRLCMAVCSVILFAHALQIISIRNDTTSVQQLAQKFVQDEPYRISLSLAILDFERIKFSKWLGVHVWPVPIWLFCAFFQTSSTIRRKHLHLHRWIGRLFLLVSVWMTVGYAMMFIAGEKILGDEQFYVDFQQPNKFFTFRAATIFFSGWWVLSAVKAYMYARQKLISKHKYWAWQFMATGFAVAVMRIFMFILVALLFSGSGHRVMEKEDQDILGGYTLWLGFIVSIAVTHIVVGSEVGL 250
            YVLSR  M VCS+IL A+  +++  +    S+ QL  + +     R++  L  LD ER+K S WLG HVWPVPIWLF +F+QTSS IRRK L LHR  GR  LL+S++MT GY MMF+ GE+ILG+EQFY+DF+ P+KFFTFRAAT+  + WW +SA KAY YA+++L++ HKYWAWQF+ATGFAV  MRIFM +++   +  +G RV++KE+QD+L GYTLWL F VS    H+VVG EV L
Sbjct:    8 YVLSRAFMLVCSLILLANTYEVLYFQLTNLSIAQLVAQQLAKSDVRMTQRLMRLDIERMKLSNWLGYHVWPVPIWLFLSFWQTSSLIRRKWLWLHRVAGRGVLLLSLYMTFGYIMMFVTGEQILGEEQFYIDFRNPSKFFTFRAATLVLTVWWFISAAKAYGYAKRRLVALHKYWAWQFLATGFAVGTMRIFMMLILLPWYPSNGERVLDKEEQDVLVGYTLWLAFFVSTCTAHLVVGREVAL 250          
BLAST of Gcaud8521.t1 vs. uniprot
Match: A0A090MD57_OSTTA (Unnamed product n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MD57_OSTTA)

HSP 1 Score: 67.4 bits (163), Expect = 1.340e-9
Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = 0
Query:   67 KFSKWLGV---HVWPVPIWLFCAFFQTSSTIRRKHLHLHRWIGRLFLLVSVWMTVGYAMMFIAGEKILGDE----------QFYVDFQQPNKFFTFRAATIFFSGWWVLSAVKAYMYARQ--KLISKHKYWAWQFMATGFAVAVMRIFMFI 202
            K+ K L V   HV P  +W   A FQ     R++    HR+ GRLFL++S  MT GY ++   G     ++           F++D+       +F     F + W+  +A++AY+      +  + H+ W W+ +A+G AVA+ R+F+FI
Sbjct:   61 KYRKHLAVCVAHVLPASVWSAIAPFQIHPAARKRFPRAHRYAGRLFLIISASMTYGYYLINKRGLHFHANDFPTIPVEERASFWIDYGAVGL--SFVHVEHFGAMWFAFTAMRAYIAVATPPRNFTAHRAWTWRHIASGLAVALQRVFLFI 209          
BLAST of Gcaud8521.t1 vs. uniprot
Match: D7FX30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.990e-6
Identity = 36/140 (25.71%), Postives = 72/140 (51.43%), Query Frame = 0
Query:   59 AILDFERIKFSKWLGVHVWPVPIWLFCAFFQTSSTIRRKHLHLHRWIGRLFLLVSVWMTVGYAMMFIAGEKILGDEQFYVDFQQPNKFFTFRAATIFFSGWWVLSAVKAYMYARQKLISKHKYWAWQFMATGFAVAVMRI 198
            +IL + R    +   +H+ P  +W   A  Q S + R KH   HR +GRLF+ +SV +++G   + ++G               PN  ++    ++ F+G+++++ + A  +AR K  + H+ W  + +A G++V + R+
Sbjct:   94 SILAYARTPAGR--VMHILPAGLWSVIAPLQLSPSFRAKHRTAHRRLGRLFIFMSVSISLGLVPLVLSGAPTT-----------PN--WSNGRESLVFAGYFLVTGLLAVHHARNKRFADHRVWMLRHVAMGYSVHMQRL 218          
The following BLAST results are available for this feature:
BLAST of Gcaud8521.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IG55_9FLOR1.840e-9155.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A090MD57_OSTTA1.340e-929.80Unnamed product n=2 Tax=Ostreococcus tauri TaxID=7... [more]
D7FX30_ECTSI5.990e-625.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018750Protein of unknown function DUF2306, membranePFAMPF10067DUF2306coord: 74..243
e-value: 1.4E-9
score: 38.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..252
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..258
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 89..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 209..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..146
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 71..88
NoneNo IPR availableTMHMMTMhelixcoord: 146..165
NoneNo IPR availableTMHMMTMhelixcoord: 13..32
NoneNo IPR availableTMHMMTMhelixcoord: 223..245
NoneNo IPR availableTMHMMTMhelixcoord: 104..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_243_length_34547_cov_4.802386contigNODE_243_length_34547_cov_4.802386:17265..18041 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8521.t1Gcaud8521.t1Gracilaria caudata M_176_S67 malemRNANODE_243_length_34547_cov_4.802386 17265..18041 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8521.t1 ID=Gcaud8521.t1|Name=Gcaud8521.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MKAKLTKYVLSRLCMAVCSVILFAHALQIISIRNDTTSVQQLAQKFVQDE
PYRISLSLAILDFERIKFSKWLGVHVWPVPIWLFCAFFQTSSTIRRKHLH
LHRWIGRLFLLVSVWMTVGYAMMFIAGEKILGDEQFYVDFQQPNKFFTFR
AATIFFSGWWVLSAVKAYMYARQKLISKHKYWAWQFMATGFAVAVMRIFM
FILVALLFSGSGHRVMEKEDQDILGGYTLWLGFIVSIAVTHIVVGSEVGL
TLGGAKRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018750DUF2306_membrane