Gcaud850.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud850.t1
Unique Name	Gcaud850.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	453

Homology

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BLAST of Gcaud850.t1 vs. uniprot
Match: A0A2V3J2K4_9FLOR (PWWP domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2K4_9FLOR)

HSP 1 Score: 311 bits (796), Expect = 5.330e-96
Identity = 214/493 (43.41%), Postives = 279/493 (56.59%), Query Frame = 0

Query:    1 MRPTRNGADAIMAYWVLFSGENVGGWIRTDCLVPYHPVYAATLLVPSDIPIFRDRRIALRVAEREYNQRPSRFGYHPADMRHLVSLCSIPINDFVDIKSQDSQADRESDRTHSNQ--------------------NTPSPPQDYMQDSDTDDHNHSSEHAG-----PRRSGRMTLRPRL-AKREQQLQPSRVLRSRSRKPSAVETEPSQSDDDDCLYI-PVKSEPKELVTTANHAAPAGRRPTL---PNGVQPQHQQPTLHSAA--------KPFVRRKRGRPRKHPLPEQKTPADSRITKPEPAVTQPRVVKGEPIDALTHIPTQMSYRRQFRRKKRGRPRKV-VQPPEPPASEAKESTSQIIDRMQRRITRQEKQIVLLSQQQKLQD--AAQGSSVGHSTLPSISFLTKTPDPDNIKAQTERFVQKMLNFQRLAVQFGVEAERFQEAKKNCEEAWKAVVEEGRGTEEQAMELEGFLSKLPSLAEFLRTVRM 452
            MRPTR+G DAIMAYWV+FSGE VGGW+RTDCLVPY+P+YA    +PS  PI  D++ AL VA  E++Q  SRF Y P D   L  L  IP+NDFVDIKSQDS+AD+E + +  ++                     + S   +Y+Q        H ++  G     PR++   T RP L + +  + +P RV+ + S      +T P   +DDD L+I PVK EP+++ T+     P          P    P    P    A         +PF RRKRGRPRKHPLP       +R+ K E + +    VK EP D LTHIP + S + Q RRK+RGRPRK        P  + KE+T Q+IDRMQRRI RQ                  A+GS+ G STLP IS LTK  DPD I+AQ E+F Q++L FQ++A QF  EAE+   A++NCE AWKA+VE GRGTE+  M+LE  +SK+P   +FLRTVRM
Sbjct:  165 MRPTRSGDDAIMAYWVIFSGERVGGWVRTDCLVPYNPMYAHRAQLPSTDPIHHDQKRALSVAADEHSQVGSRFCYTPEDYFMLEELLRIPVNDFVDIKSQDSEADKEPEPSAHHEIPXXXXXXXXXXXXXXXXXSQSCSYDSEYVQ--------HPTQRPGLRPRPPRKAH--TDRPTLRSDKVSKPRPQRVVLTHSN-----QTSPVSDNDDDALFISPVKPEPQQIPTSTPVNQPTXXXXXXXXTPLESNPAELLPKSTPAPXXXXXXXXRPFARRKRGRPRKHPLP-----VATRLAKQETSASTQGQVKREPQDILTHIPEKPSLQSQVRRKRRGRPRKSEXXXXXXPVLDPKETTEQVIDRMQRRINRQXXXXXXXXXXXXXXXNLRAKGSAAGPSTLPHISLLTKLLDPDAIRAQNEKFSQRILAFQKMAAQFAYEAEKLDLARRNCENAWKALVETGRGTEQHLMDLEVLVSKIPEFVDFLRTVRM 637

The following BLAST results are available for this feature:

BLAST of Gcaud850.t1 vs. uniprot

BLAST of Gcaud850.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J2K4_9FLOR	5.330e-96	43.41	PWWP domain-containing protein n=1 Tax=Gracilariop...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 318..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..321

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1229_length_12344_cov_4.015506	contig	NODE_1229_length_12344_cov_4.015506:2070..3428 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud850.t1	Gcaud850.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1229_length_12344_cov_4.015506 2070..3428 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud850.t1 ID=Gcaud850.t1|Name=Gcaud850.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=453bp
MRPTRNGADAIMAYWVLFSGENVGGWIRTDCLVPYHPVYAATLLVPSDIP
IFRDRRIALRVAEREYNQRPSRFGYHPADMRHLVSLCSIPINDFVDIKSQ
DSQADRESDRTHSNQNTPSPPQDYMQDSDTDDHNHSSEHAGPRRSGRMTL
RPRLAKREQQLQPSRVLRSRSRKPSAVETEPSQSDDDDCLYIPVKSEPKE
LVTTANHAAPAGRRPTLPNGVQPQHQQPTLHSAAKPFVRRKRGRPRKHPL
PEQKTPADSRITKPEPAVTQPRVVKGEPIDALTHIPTQMSYRRQFRRKKR
GRPRKVVQPPEPPASEAKESTSQIIDRMQRRITRQEKQIVLLSQQQKLQD
AAQGSSVGHSTLPSISFLTKTPDPDNIKAQTERFVQKMLNFQRLAVQFGV
EAERFQEAKKNCEEAWKAVVEEGRGTEEQAMELEGFLSKLPSLAEFLRTV
RM*