Gcaud8475.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8475.t1
Unique NameGcaud8475.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length287
Homology
BLAST of Gcaud8475.t1 vs. uniprot
Match: A0A2V3J6H7_9FLOR (Cyclin-D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H7_9FLOR)

HSP 1 Score: 293 bits (751), Expect = 3.330e-96
Identity = 150/277 (54.15%), Postives = 199/277 (71.84%), Query Frame = 0
Query:   10 LWQLIDQRRIQARNRQARLNRSIVDSKLRQEQLKRWKAQPNHEAFKSIGGQIGRTMLFSWLFDECSSRNLRHSTTFLAVNYLDRMLSKGCDSPATAQTTASICIRLAVKMDEVGGDNMHVPLFKHNPAPLHSELYVLNSLDWQMNVPTIYLFLTMFTEIVWLPTCSRDRAVEYAKHISLYVDSQEFYPSSLAMVCILLLEQDSLLPLPCKALAFGLVGEGKVNLTEISDAFKRFRHVCFSSNC---EDHDDDHYQR-NGTDSSATTAYPDSSSTQTS 282
            +W+ +D+ R Q R+ + ++  SI+ S L QE+L  WK +PNHEAF SIGGQ+GR+ML SW+ DEC+ + L+ ST  LAVNYLDRM+SKGC +  ++Q+ A  CIRLA+K D VGG+ MHVP F         EL+VL+ L+W+MNVPT++LFL +F++ VWLP  SRDRA EY K I +YV+SQ F PS+LAM+CI LL+QD LLPLPC+AL+  LV EGKV+L ++SD FKRFRHVCFS  C   +D  DD  +  +       TAYP+S S+Q+S
Sbjct:    1 MWRKVDEEREQTRSSEVQIRNSILASTLSQEKLNHWKVEPNHEAFLSIGGQVGRSMLISWVVDECTKQKLKPSTICLAVNYLDRMISKGCVTLDSSQSFACTCIRLAIKFDGVGGNGMHVPTFGEAVPSAKMELFVLDHLNWKMNVPTVHLFLKLFSDEVWLPPPSRDRAFEYVKRIFVYVESQMFNPSALAMICIFLLQQDDLLPLPCEALSTALVREGKVDLDQVSDGFKRFRHVCFSPYCSHIQDRADDRTRNEDXXXXXXATAYPESMSSQSS 277          
BLAST of Gcaud8475.t1 vs. uniprot
Match: A0A022QQ52_ERYGU (Cyclin N-terminal domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QQ52_ERYGU)

HSP 1 Score: 58.5 bits (140), Expect = 4.130e-6
Identity = 51/167 (30.54%), Postives = 72/167 (43.11%), Query Frame = 0
Query:   49 PNHEAFKSIGGQIGRTMLFSWLFDECSSRNLRHSTTFLAVNYLDRMLSKGCDSPATAQTTASICIRLAVKMDEVGGDNMHVPLFKHNPA-----PLHSELYVLNSLDWQMNVPTIYLFLTMFTEIVWLPTCSRDRAVEYAKHISLYVDSQEFY-----PSSLAMVCI 205
            P + A +S   +  R +L  WL +      LR  T FL VN +DR L+K        Q    + + LA K +EV    +   +F  + A      L  E  +LNSL + M+VPT Y+F+  F     L     DR +E      + +   EF      PS LA V I
Sbjct:  192 PEYMAQQSDINERMRAILIDWLIEVHHKFELREETLFLTVNIIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVDDLVFISDKAYSRKEVLEMEKLMLNSLQFNMSVPTPYVFMRRF-----LKAAQSDRKLELLSFFLIELCLVEFEMLKYPPSYLAAVAI 353          
BLAST of Gcaud8475.t1 vs. uniprot
Match: A0A484MI84_9ASTE (Cyclin N-terminal domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MI84_9ASTE)

HSP 1 Score: 58.5 bits (140), Expect = 4.190e-6
Identity = 40/124 (32.26%), Postives = 57/124 (45.97%), Query Frame = 0
Query:   63 RTMLFSWLFDECSSRNLRHSTTFLAVNYLDRMLSKGCDSPATAQTTASICIRLAVKMDEVGGDNMHVPLFKHNPA-----PLHSELYVLNSLDWQMNVPTIYLFLTMFTEIVWLPTCSRDRAVE 181
            R +L  WL +     +LR  T FL VN +DR L K C      Q    + + LA K +EV    +   +F  + A      L  E  +LN+L + M+VPT Y+F+  F     L     DR +E
Sbjct:  211 RAILIDWLIEVHYKFDLREETLFLTVNLIDRFLEKQCVVRKKLQLVGLVAMLLACKYEEVSVPVVDDLIFISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFMKRF-----LKAAQSDRKLE 329          
BLAST of Gcaud8475.t1 vs. uniprot
Match: A0A103Y5P5_CYNCS (Cyclin A/B/D/E n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y5P5_CYNCS)

HSP 1 Score: 57.8 bits (138), Expect = 7.290e-6
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 0
Query:   63 RTMLFSWLFDECSSRNLRHSTTFLAVNYLDRMLSKGCDSPATAQTTASICIRLAVKMDEVGGDNMHVPLFKHNPAPLHSELY-----VLNSLDWQMNVPTIYLFLTMFTE 167
            R +L  WL +     +L+H T FL VN +DR L+K   +    Q    + + LA K +EV    +   +F  + A   +E+      +LN+L++ M+VPT Y+FL  F +
Sbjct:  194 RAILIDWLIEVHHKFDLQHETLFLTVNLIDRFLAKQSMARKKLQLVGLVAMLLACKYEEVSVPVVDDLIFISDKAYSRTEILEMEKLMLNTLEFNMSVPTPYVFLKRFLK 303          
The following BLAST results are available for this feature:
BLAST of Gcaud8475.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J6H7_9FLOR3.330e-9654.15Cyclin-D n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
A0A022QQ52_ERYGU4.130e-630.54Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A484MI84_9ASTE4.190e-632.26Cyclin N-terminal domain-containing protein n=3 Ta... [more]
A0A103Y5P5_CYNCS7.290e-631.82Cyclin A/B/D/E n=2 Tax=Cynara cardunculus var. sco... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 50..154
e-value: 8.7E-18
score: 66.5
NoneNo IPR availableGENE3D1.10.472.10coord: 49..207
e-value: 8.7E-18
score: 66.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..286
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 62..154
e-value: 1.3E-10
score: 41.1
IPR039361CyclinPANTHERPTHR10177CYCLINScoord: 37..226
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 62..122
e-value: 7.82156E-6
score: 41.4553
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 63..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_412_length_26355_cov_4.423431contigNODE_412_length_26355_cov_4.423431:20847..21767 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8475.t1Gcaud8475.t1Gracilaria caudata M_176_S67 malemRNANODE_412_length_26355_cov_4.423431 20847..21767 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8475.t1 ID=Gcaud8475.t1|Name=Gcaud8475.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MDISASPSSLWQLIDQRRIQARNRQARLNRSIVDSKLRQEQLKRWKAQPN
HEAFKSIGGQIGRTMLFSWLFDECSSRNLRHSTTFLAVNYLDRMLSKGCD
SPATAQTTASICIRLAVKMDEVGGDNMHVPLFKHNPAPLHSELYVLNSLD
WQMNVPTIYLFLTMFTEIVWLPTCSRDRAVEYAKHISLYVDSQEFYPSSL
AMVCILLLEQDSLLPLPCKALAFGLVGEGKVNLTEISDAFKRFRHVCFSS
NCEDHDDDHYQRNGTDSSATTAYPDSSSTQTSTGTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006671Cyclin_N
IPR039361Cyclin
IPR013763Cyclin-like
IPR036915Cyclin-like_sf