Gcaud8386.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8386.t1
Unique NameGcaud8386.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length382
Homology
BLAST of Gcaud8386.t1 vs. uniprot
Match: A0A2V3J2P2_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2P2_9FLOR)

HSP 1 Score: 354 bits (909), Expect = 2.490e-117
Identity = 248/378 (65.61%), Postives = 290/378 (76.72%), Query Frame = 0
Query:    6 EPDRKRIRTCTSAKDEV-NTSDVENARSEFCPTRPPQAERKRELERNRRNLVNIRFIELEKELIRSGPRATDPSDKGSASSSEFVAKGKRIDKEAVLKEAAQRIAALRKEVESQASRIASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKRLRVDNIGLWQAVRKQSLVKNYLAPD-LAKIPIDLFTRSKHQSMPQSATPSASTGPFSQGLQSQPLPSVLPSASQPQRAIFPSSSINAIHPQPPDPDPAVETNPSMLQGESILMHQTSEELSDLFATYVPGVMNTADRAPIPSLGAIPDLSQSTSLPVSHLRNPQLQLTQLMSSAQSNPNQPVVSSPVKDPQSMQPNNSTSPDIGSSGREKSGDDPFSDIAYCV 381
            +P+RKR RT +S KD+  N+SDV+  R + CPTRPPQAERKRELERNRRNLVNIRF+ELEKELIRSGPRA    ++GS SSSEFVAKGKRIDKEAVLKEAAQRIA+LRKEV+SQ +RI  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRLR DNIGLWQA+RKQS+VKNYLA D LAKIP DLF R+K Q +P  ATPS+ST P S         S LPSASQPQ +  P++S  A+   P DP+   E + S L  E+ILMHQT EELS+LFA+Y+PGVM   DR  +  +  +PDLSQS SLPVSHL+N QLQL+ L+++AQ   +Q  +++  K    +  +N T  D  SS REKSGDDPFSDIAYCV
Sbjct:    2 QPERKRARTTSSPKDDAHNSSDVDVNRHDDCPTRPPQAERKRELERNRRNLVNIRFVELEKELIRSGPRAEHHPERGSISSSEFVAKGKRIDKEAVLKEAAQRIASLRKEVQSQTARIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLRTDNIGLWQALRKQSVVKNYLASDQLAKIPADLFNRAKTQPVPTPATPSSSTLPASHLAPRHSTSSPLPSASQPQSSFSPTNS--ALMRPPADPNLHHENHRSPLHSEAILMHQTPEELSELFASYIPGVMMPPDRTALADVSTLPDLSQSISLPVSHLQNHQLQLSHLVATAQPTGDQRKMTTSGKSSHLLSTDNETDRDGESSRREKSGDDPFSDIAYCV 377          
BLAST of Gcaud8386.t1 vs. uniprot
Match: R7QSV5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSV5_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 4.440e-29
Identity = 131/298 (43.96%), Postives = 168/298 (56.38%), Query Frame = 0
Query:   38 RPPQAERKRELERNRRNLVNIRFIELEKELIRSGPRATDPSDKGSASSSEFVA--KGKRIDKEAVLKEAAQRIAALRKEVESQASRIASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKRLRVDNIGLWQAVRKQSLVKNYLAPDLAKIPIDLFTRSKHQSMPQSA----TPSASTGPFSQGLQSQPLPSVLPSASQPQRAIFPSSSINAIHPQPPD--PDPAVETNPSMLQGESILMHQTSEELSDLFATYVP------GVMNTADRAP----IPSLGAIPDLSQSTSLPVSH 317
            RP QAERKRELERNRRNLVN+RF ELE +L    PR  D S +    +   V   +GKRIDKEAVLKEAA R+AA  K++ S   R+++           XXXXXXXXXXXXXXXXXXXXX KRLR DNI LWQA++K S +K+  APD+AKIP +LF R        SA     P AS  P      +QP+ + +      Q+ I      NA+  Q P     P  + + S +  +S L+ QT EELS+ F  ++P      GV +  D        P+L A+   S   S+P++H
Sbjct:   25 RPSQAERKRELERNRRNLVNVRFAELEAKLHLMTPRP-DASGRLVLPADPPVPPPRGKRIDKEAVLKEAAHRLAAQSKDLASLGDRVSAINKEIDNLRAEXXXXXXXXXXXXXXXXXXXXXVKRLRTDNIMLWQALKKASSLKDSFAPDVAKIPAELFLRRAIPDGLASALSQPVPHASAAPAIPPRPAQPMSTPMQRHRHHQQQIH-----NALSSQTPSHQSSPNAQAHQSAIATDSFLVLQTPEELSEFF--HMPQGMQPFGVASRVDEKGGLRNSPNLTAMGGASPPQSMPMAH 314          
The following BLAST results are available for this feature:
BLAST of Gcaud8386.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2P2_9FLOR2.490e-11765.61BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
R7QSV5_CHOCR4.440e-2943.96Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 312..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 312..381
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 42..144
e-value: 1.6E-6
score: 30.2
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 44..135
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 40..111
score: 9.140141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:14982..16127 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8386.t1Gcaud8386.t1Gracilaria caudata M_176_S67 malemRNANODE_406_length_26511_cov_4.568963 14982..16127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=382bp
MPPSPEPDRKRIRTCTSAKDEVNTSDVENARSEFCPTRPPQAERKRELER
NRRNLVNIRFIELEKELIRSGPRATDPSDKGSASSSEFVAKGKRIDKEAV
LKEAAQRIAALRKEVESQASRIASMTDEISHLRAEKLELRTDKSYLRSEL
ENARNETKRLRVDNIGLWQAVRKQSLVKNYLAPDLAKIPIDLFTRSKHQS
MPQSATPSASTGPFSQGLQSQPLPSVLPSASQPQRAIFPSSSINAIHPQP
PDPDPAVETNPSMLQGESILMHQTSEELSDLFATYVPGVMNTADRAPIPS
LGAIPDLSQSTSLPVSHLRNPQLQLTQLMSSAQSNPNQPVVSSPVKDPQS
MQPNNSTSPDIGSSGREKSGDDPFSDIAYCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom