Gcaud8379.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8379.t1
Unique Name	Gcaud8379.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Homology

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BLAST of Gcaud8379.t1 vs. uniprot
Match: A0A2V3IF96_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF96_9FLOR)

HSP 1 Score: 124 bits (312), Expect = 1.870e-30
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 0

Query:   65 DPVITPTASQAANISRSRLAYSQASGASTSVTLPRSRNLKTSATLSGSIEFKGFLAGDIEREIERVVANSSRRLRRFFSREKRALQERADDGYFFFFQAAANFGYSDNDETRGVLQSREFYRFTNQSALILSSCEERTLAADYSVSVDLTSTGFARRVTLQAFLYFSQVTMTSGKILTLVTNSSRLVIADEDGNMYD 261
            D ++ PT +Q A I RSRL Y Q S A++   +P  R +  SA+L G++   G LA DIE   ER+      R+R F+  EKR LQ RA D YF FFQAA +FG++++  TR  L S ++ +F+ +  + L S    +L + YSV+    S G  R +   A++  +Q+T++SG+IL +V  +  LV+ D++ N+ D
Sbjct:   60 DRMLAPTTAQVAGIERSRLGYIQTSRAASGF-IPPGRGITFSASLEGNVSMTGSLASDIEDATERIALGEPDRVREFYRTEKRNLQSRAGDNYFHFFQAARDFGFTEDQTTRDTLNSTDYAQFSEKVGVELGSSFLGSLNSRYSVTYSGVSDGNQRVIQAFAYVLINQITLSSGRILNIVQKNPELVVTDQEFNVID 255

The following BLAST results are available for this feature:

BLAST of Gcaud8379.t1 vs. uniprot

BLAST of Gcaud8379.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IF96_9FLOR	1.870e-30	38.07	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 24..28
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..289
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..28
None	No IPR available	TMHMM	TMhelix		coord: 13..32

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1026_length_14910_cov_4.896079	contig	NODE_1026_length_14910_cov_4.896079:10015..10884 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8379.t1	Gcaud8379.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1026_length_14910_cov_4.896079 10015..10884 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8379.t1 ID=Gcaud8379.t1|Name=Gcaud8379.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MLNTQTVNTLSRALVVFGFLFFFSYVNATSLSLSDLAEFLEEASEPDSTP
EEPAPTDFSPTDIGDPVITPTASQAANISRSRLAYSQASGASTSVTLPRS
RNLKTSATLSGSIEFKGFLAGDIEREIERVVANSSRRLRRFFSREKRALQ
ERADDGYFFFFQAAANFGYSDNDETRGVLQSREFYRFTNQSALILSSCEE
RTLAADYSVSVDLTSTGFARRVTLQAFLYFSQVTMTSGKILTLVTNSSRL
VIADEDGNMYDDSQAIELISADELHLSSSRGIADNLQSP*