Gcaud8293.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8293.t1
Unique Name	Gcaud8293.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	597

Homology

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BLAST of Gcaud8293.t1 vs. uniprot
Match: A0A2V3IZA2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZA2_9FLOR)

HSP 1 Score: 345 bits (884), Expect = 1.660e-107
Identity = 217/532 (40.79%), Postives = 293/532 (55.08%), Query Frame = 0

Query:   95 ANIPDDELSREAKNLLGRRIPVN--------------TDRSTRTALSIFSVFYAKHQKLLYGADVAALSNIKTPLPTKQRITENAIS-----LTRQHLFRDRRGLPLSNGYDKWEDWQLHSINNALIEFVAHYRQARSGEELAPGTLKVYVAGIQRAFREDYNLDLGLLRGHIFSDKQIGLYCALDNKVKERQAAGAVRQSHNNLSLEDLKRLYSSEQLSKNTPKGFMVRILVDLLLITAFRKSELWSLRMKDVTRAKQNGMDALRIVGQIGSRDGSSKTQRGGLHMVNVRPKEVFVFDMDVLDDTVNIYNDLCHYLDIVAPTREAEDRFLAAIDYRASTRAKFFKKGNLGVNSIYKYVTDACNEVGIRGEGVFDHVTTHSFRATVVSQLKANGFDDSSVALRTGNRDMRSLKAYHNLRGNMGVQQQAAIFGSSVDTPSSVGNDGGSVHRAEVSKACVNRPSVRNDNTVAVEVLEDCDNRNERSA----------KRQRTNDVFTAIGNMSGQITVNINYY-HPRENEEKKE 596
            AN  +  LS EA +LLG+ +                 T RS R  L+ F  FY KH  L     V    +  +P   KQ +           LTR HLFRD   L +++ +  W  +QL +IN ALIE++AH R AR+G+ELA  TLKVYVAGIQR F  ++        G +FSDK  G+  AL NKV+ERQAAG++ +S N LS ED+K+LYSS  LSK TP+GF+ RI+  L L+T+ RK ELW+LRMKDVT   + G    +IVG  G+  G+S+TQ  G  +VN +PKEV++ + + L   VNI+ D+  Y+ IV   R  ED FLA+++Y A  R KFF++GNLG++SI  YV +AC  +GI GEGV DHVT    R TV+S L  +   + S       R+ R+LK  HN RGN+G QQQ  I G+S +   +V        +  V    V RP V      A    E C  +   +A          KRQR       I   S QI+ N++Y  +P +N E++E
Sbjct:   93 ANTDERTLSAEALSLLGKHVTQKERXXXXXXXXXXXXTQRSNRQCLAQFCAFYVKHYNLRASNLVERAEDPSSPKRKKQSVQAQXXXXXXXRLTRMHLFRDTNNLSVADNHRDWSMFQLQNINAALIEYIAHVRNARTGKELAANTLKVYVAGIQRVFESEWGFQFKFFSGPVFSDKNKGIVTALGNKVRERQAAGSIIRSRNTLSKEDIKKLYSSAVLSKQTPRGFITRIIFGLALMTSLRKRELWALRMKDVTLCVEQGEKVWKIVGCNGTSGGASETQARGWALVNSKPKEVYIRNTEHLGGLVNIFKDVEEYMQIVTTMRGPEDHFLASVNYTAIDRRKFFRRGNLGIHSIANYVKEACEVLGIVGEGVNDHVTVDGLRETVISNLADSDHGELS-------RESRTLKDKHNHRGNLGRQQQMTIRGNSEEGQGTV--------QDTVVPENVRRPIVVGGKRSA----ESCVTKRHAAAGNESGSSCFGKRQRVERSLCDIRKKSLQISTNVSYKKNPGKNSEREE 605

The following BLAST results are available for this feature:

BLAST of Gcaud8293.t1 vs. uniprot

BLAST of Gcaud8293.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IZA2_9FLOR	1.660e-107	40.79	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013762	Integrase-like, catalytic domain superfamily	GENE3D	1.10.443.10	Intergrase catalytic core	coord: 278..497 e-value: 1.9E-14 score: 55.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..58
None	No IPR available	CDD	cd00397	DNA_BRE_C	coord: 284..490 e-value: 9.66364E-13 score: 64.4235
IPR002104	Integrase, catalytic domain	PROSITE	PS51898	TYR_RECOMBINASE	coord: 275..505 score: 15.411819
IPR011010	DNA breaking-rejoining enzyme, catalytic core	SUPERFAMILY	56349	DNA breaking-rejoining enzymes	coord: 279..495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1668_length_9166_cov_4.693333	contig	NODE_1668_length_9166_cov_4.693333:7223..9013 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8293.t1	Gcaud8293.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1668_length_9166_cov_4.693333 7223..9013 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8293.t1 ID=Gcaud8293.t1|Name=Gcaud8293.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=597bp
MALSPSLSQTPQLPISIELVPETPSPLPEEVLPATPTFQFDENEIKTQNQ
SASKSELRTAPVGATEIEKGASEAKESTELTSVEHAATSLQQEEANIPDD
ELSREAKNLLGRRIPVNTDRSTRTALSIFSVFYAKHQKLLYGADVAALSN
IKTPLPTKQRITENAISLTRQHLFRDRRGLPLSNGYDKWEDWQLHSINNA
LIEFVAHYRQARSGEELAPGTLKVYVAGIQRAFREDYNLDLGLLRGHIFS
DKQIGLYCALDNKVKERQAAGAVRQSHNNLSLEDLKRLYSSEQLSKNTPK
GFMVRILVDLLLITAFRKSELWSLRMKDVTRAKQNGMDALRIVGQIGSRD
GSSKTQRGGLHMVNVRPKEVFVFDMDVLDDTVNIYNDLCHYLDIVAPTRE
AEDRFLAAIDYRASTRAKFFKKGNLGVNSIYKYVTDACNEVGIRGEGVFD
HVTTHSFRATVVSQLKANGFDDSSVALRTGNRDMRSLKAYHNLRGNMGVQ
QQAAIFGSSVDTPSSVGNDGGSVHRAEVSKACVNRPSVRNDNTVAVEVLE
DCDNRNERSAKRQRTNDVFTAIGNMSGQITVNINYYHPRENEEKKE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013762	Integrase-like_cat_sf
IPR002104	Integrase_catalytic
IPR011010	DNA_brk_join_enz