Gcaud82.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud82.t1
Unique NameGcaud82.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Homology
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BLAST of Gcaud82.t1 vs. uniprot
Match: A0A2V3IEM1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEM1_9FLOR)

HSP 1 Score: 81.3 bits (199), Expect = 3.580e-15
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 0 
Query:    3 RFKQWKHISSLNLASLLLEIEGEQQE----AVTVLEDLMTTDLRLIAMLNLAYILMNDVHGVTKDVTRGMQLLEDAVKESNDVSARAMLANALSKASGSDAGDVERGWKLWQSVEEDVQGEEELRKVRRLISESCEEKWVTHGFQ 143
            RF    +I+SLNLASLLL+   +  E    A+T+LE LM T+LR IA +NL Y+L   V G+ +D  R +++L   + E+ DVSAR +LA+ L++ +     ++E       ++  ++  EEEL+K+ RL+S    E +     Q
Sbjct:  462 RFCSVANITSLNLASLLLDRTSKSPEQCAEAITILECLMETELRDIAAVNLCYVLWYGVGGIAQDQPRALKMLVRFIGETRDVSARVLLASTLAERANESNWNLESSSWTLSAIRAEISDEEELQKLARLLSPKAWEVFTLQNAQ 606
The following BLAST results are available for this feature:
BLAST of Gcaud82.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IEM1_9FLOR3.580e-1536.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..126
e-value: 3.0E-5
score: 25.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..143
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7715_length_867_cov_4.940722contigNODE_7715_length_867_cov_4.940722:253..684 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1Gcaud82.t1Gracilaria caudata M_176_S67 malemRNANODE_7715_length_867_cov_4.940722 253..684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MRRFKQWKHISSLNLASLLLEIEGEQQEAVTVLEDLMTTDLRLIAMLNLA
YILMNDVHGVTKDVTRGMQLLEDAVKESNDVSARAMLANALSKASGSDAG
DVERGWKLWQSVEEDVQGEEELRKVRRLISESCEEKWVTHGFQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf