Gcaud8062.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8062.t1
Unique NameGcaud8062.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length400
Homology
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 2.940e-83
Identity = 160/378 (42.33%), Postives = 212/378 (56.08%), Query Frame = 0
Query:    1 MVLIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTE----------DGSRFQCNDPILRFERTVP--PDEVLPDSGVVYECGKHPLDPDEDIYLHCVFVYINGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERMFAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRIPRDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKTVVDRNLVDANNPVIATSDIPGGRTVVVSNSSHEYNSLQMNVPHLFRRR 366
            MVLIP KSQY SL VT +SG AE+ALL A L +N + EC  L+ GGK+N+R HR RTK L V AT+AF+ LE F+SF+SDP     L    CTS+D LTV QG+      T VV +KC+ +N T    H+G IS            D   F+C    + +   V   PDE +PD  VV   G             CVFVY +G+EVTFT  +  E V  V+ E   L V+KT + YN +G+E  FA RA    +  VTD   LRR +F G     C+F+   DAT +  G IYA+  AW  S    + +  ++  IFYD+SDPLHWAQKT+ D +L D +NPV+ T    G R ++V+ SS   +  + ++  LFRR+
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCVGTS-----------CVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSAP-SEQESSIGTLFRRK 366          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3ISI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 240 bits (612), Expect = 1.910e-72
Identity = 152/368 (41.30%), Postives = 206/368 (55.98%), Query Frame = 0
Query:    1 MVLIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGSRFQCNDPILRFERTV--PPDEVLPDSGVVYECGKHPLDPDEDIYLHCVFVYINGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERMFAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRIPRDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKTVVDRNLVDANNPVIATSDIPGGRTVVVSNSSHEYNSLQMNVPHLFRRR 366
            MVLIP KSQY SL  T +SG AE+ALL A L YN + EC  L  GG++N+R HR RT+ L V AT+AF+ LE  NSFFSDPA         C S+D L + +G+        VV + CL  N + +   +G IS  D    +C D  L F   +   P+E +PD   + EC    LD + ++   C F+Y NGSEVTFT  +    +  V+     LRV+KT V YN +GMER   +R+      +VTD   LRRE+F G     C+F +   AT +  G +YA+A AW  S    L ++ ++  +FYD+SDPL WA++TV D +  D +NPV+ T    G R V+V+ SS      + NV  LFRRR
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNIS--DDGEIKCGDDFL-FSADIHHSPNEPVPDEHTM-ECI---LDGELNL---CAFLYSNGSEVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSSAPSEE-ESNVGTLFRRR 357          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 205 bits (522), Expect = 1.370e-58
Identity = 136/382 (35.60%), Postives = 200/382 (52.36%), Query Frame = 0
Query:    1 MVLIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGS--RFQC---------NDPILRFERTVPPDEVLPDSGVVYEC-------GKHPLDPDEDIYLHCVFVY------INGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERMFAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRI-PRDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKTV--VDRNLVDANNPVIATSDIPGGRTVVVSNSSHEYNSL 355
            MV IP KSQ+VSL VT +SG AE+ L  A L +N + EC+ LR+G ++++R HR R KFLAVLA + FI LE   SFFSDPA         C +VD + + +G TG     D +L++C+ + +      +G  S    +  R +C         N+  L+F  T        D+ +V EC       G+ P  P E +   C  V       I  + V  +  +    V P++ ++ ++   +T V YN SG+ R FA+R   A+   VTD + +R+ +F G     C F    +D T + LGL+Y +  AW+ SFLT  ST+ L+  IFYD+SDPLHWAQ+T   +D  +V   NPV+ +    G R + VS S+   + L
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKP--PTERL---CAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIV--GNPVVTSVYEHGERLMYVSGSASNDDDL 375          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 147 bits (372), Expect = 4.300e-37
Identity = 108/365 (29.59%), Postives = 173/365 (47.40%), Query Frame = 0
Query:    1 MVLIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGSRFQCNDPILRFERTVPPDEVLPDSGVVYECGKHPLDPDEDIYL---HCVFV----YINGSEVT---FTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERM--FAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRIPRDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKTVVDRNLVDANNPVIATSDIPGGRTVVVSNSSHEYN 353
            MVLIP KSQYVSL  T +S   E++LL A LR N + EC  L++G  +++ RH+ R   L ++ T AF  +E   SF+SDPA   T ++ PC +V+ LT   G  G       ++L C+  N++++ L  G  S E           L F  T+ P   LP         ++P  PD  +      CV +    Y + S  T   F+     + V  +  +   ++   T +    +  E +  FA+R   A+   + D   LRR +F G     C F+   +ATE+   +I +++  W+ S      T+ L   +FYD+S+P+HWA++T    +     +P ++     G   + VS S+ E N
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAESATLMF--TLEPHVSLPIGTAAAVSSENPF-PDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVSGSNPEGN 362          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3J5B4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 100 bits (249), Expect = 7.190e-20
Identity = 93/339 (27.43%), Postives = 144/339 (42.48%), Query Frame = 0
Query:    4 IPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPC-------------TSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGSRFQCN-DPILRFERTVPPDEVLPDS--GVVYECGKHPLDPDEDIYLH---CVFVYI-NGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERM--FAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRIP-RDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKTV 319
            IP +    SL +T  S   E+A L A   +N   EC  LR G ++++ RHR R K L +LAT+ F+ LE   S  S           PC             +S D  TV+ G        D + + C++V    V + +G  S  D    QC   PI  F       E LP +  GV+  C       ++D +L+   C  V + N + +  +     E    + AE      F+   ++   G +++   AK+    + + V+D+  +RR I T      C F     + TE+ L         W       L  +F++ G+FYD+S+ LHWA+KTV
Sbjct:    5 IPLRPSVTSLVITITSLVVELACLSALFIFNAVCECRSLRNGNRVSVARHRLRIKILTILATLTFVGLEVITSANSHTKPVTESTLSPCIRSVTKQNFDNINSSFDDQTVTNG-------RDNIGISCVNVGGGEVFVKNGNYSL-DTLDVQCGAKPI--FSYVSAEKEFLPPASPGVITHC-------EQDEFLNMGTCASVSLQNKTRLLISERFSEESNFEIDAE------FRPTQLFMTIGEDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQCSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTV 320          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3IN83_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN83_9FLOR)

HSP 1 Score: 76.6 bits (187), Expect = 9.980e-12
Identity = 78/330 (23.64%), Postives = 137/330 (41.52%), Query Frame = 0
Query:    3 LIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGV---TGYLEPTDVVLLKCLDVNQT-----HVNLHSGFISTEDGSRF-QCN-DPILRFERTVPPDEVLPDSGVVYECGKHPLDPDEDIYLH---CVFVYINGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERMFAKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFRI-PRDATEMSLGLIYALAGAWMASFLTLLSTVFLKHGIFYDVSDPLHWAQKT 318
            +IP +     L  T VS  +EI L+ A L   T  EC  L     ++I+ H  R + + V+A + FI LE   S  +         +  C  VD L  S+ +   +   +  + V+L C+ +        ++ ++ G  S      F  C+ D +++++                  GK  L+P+ + +     CVF+Y   S+V F+  +                 + TE +  A       A      +   + +++ +RR++F     G C+     ++ T +   LI   A +W  S +    T  LK GIFY++SDPLHW ++T
Sbjct:   16 IIPLRPLTTQLLFTIVSALSEIGLISAVLVILTKKECHTLSTERPVSIKSHSLRWRLIPVVAMLMFIALETLVSVHTKTHIHHVKNSHKCVQVD-LRTSEALEVESSLNKEEEAVMLNCVKMTPAEDANFNIEVYPGNYSRSGEKIFVDCSADWLMKYKLDTK--------------GKGILEPNAEQHCRNGFCVFLYSQESKVFFSPPLP----SARFNHTNEYTGYWTEFIPGAVPSLNSTATYLLLLYQKGILEEIQIRRKLFMSAERGQCEMTNGSKEHTLVPYWLISITALSWFCSAILFALTRVLKSGIFYNISDPLHWTRRT 326          
BLAST of Gcaud8062.t1 vs. uniprot
Match: A0A2V3INJ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ9_9FLOR)

HSP 1 Score: 63.2 bits (152), Expect = 2.220e-7
Identity = 73/311 (23.47%), Postives = 125/311 (40.19%), Query Frame = 0
Query:   48 INIRRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTVSQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGSRFQCNDPILRF---ERTVPPDEV-LPDSGVVYE-----CGKHPLDPDEDIYLHCVFVYINGSEVTFTHTMGREFVEPVIAEKPLLRVFKTEVMYNASGMERMF-AKRAAFAFAVVVTDDVALRREIFTGEGSGNCDFR-IPRDATEMSLGLIYALAGAWMASFLT--LLSTVFLKHGIFYDVSDPLHWAQKTVVDRNLVDANNPVIATSDIPGGRTVVV 345
            I+++R +RR +FL   A + F+ILE    F   P   F   ++PC SVD  ++   V  +    +     C  +N+     H+   S   G       P+ RF     T+  + + L  S +  E     C   P+   ++    C+ V    +++  +  +        + +   L    T + Y  S  +  F   RAA      V   V  R  +F+G  +  C  R +    T++   +  AL   W A FLT  +L  V      F+D+ DP+HWA++T     ++   + VI       G+  V+
Sbjct:   15 ISVKRSKRRRRFLQAAALVFFVILEILLVFSVHPYSAF--RSVPCVSVDT-SLRFSVGNHSPQAESAATGCRTLNRGRFTEHNATFSMSTGRTACGKKPLFRFYLNSTTLFTNLIDLQRSAIDTENHTVACASRPVSTRDN---KCLLVLRAENDLFISDLLYTFPPAAQVFDIEQLPFSATRLPYKPSQEQAEFLGARAANVLLEGVRKPVLFRHRVFSGFSNETCRERDVDPLHTQIHPAMFTALVLIWCACFLTYTVLRCVKPLGTPFFDMRDPMHWAERTYRPSRVILERDAVIQAVVFENGKRRVL 319          
The following BLAST results are available for this feature:
BLAST of Gcaud8062.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J5C2_9FLOR2.940e-8342.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI7_9FLOR1.910e-7241.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR1.370e-5835.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A0_9FLOR4.300e-3729.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B4_9FLOR7.190e-2027.43Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN83_9FLOR9.980e-1223.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INJ9_9FLOR2.220e-723.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..389
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..278
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..300
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 301..399
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 59..78
NoneNo IPR availableTMHMMTMhelixcoord: 278..300

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1330_length_11355_cov_4.428800contigNODE_1330_length_11355_cov_4.428800:7492..8691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8062.t1Gcaud8062.t1Gracilaria caudata M_176_S67 malemRNANODE_1330_length_11355_cov_4.428800 7492..8691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8062.t1 ID=Gcaud8062.t1|Name=Gcaud8062.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MVLIPFKSQYVSLFVTFVSGAAEIALLFAALRYNTFFECVKLRRGGKINI
RRHRRRTKFLAVLATMAFIILEAFNSFFSDPAQTFTLENMPCTSVDPLTV
SQGVTGYLEPTDVVLLKCLDVNQTHVNLHSGFISTEDGSRFQCNDPILRF
ERTVPPDEVLPDSGVVYECGKHPLDPDEDIYLHCVFVYINGSEVTFTHTM
GREFVEPVIAEKPLLRVFKTEVMYNASGMERMFAKRAAFAFAVVVTDDVA
LRREIFTGEGSGNCDFRIPRDATEMSLGLIYALAGAWMASFLTLLSTVFL
KHGIFYDVSDPLHWAQKTVVDRNLVDANNPVIATSDIPGGRTVVVSNSSH
EYNSLQMNVPHLFRRRREKSSGSGEQKTENTTAAAANDQHERGQSLYYV*
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