Gcaud8005.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8005.t1
Unique NameGcaud8005.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length501
Homology
BLAST of Gcaud8005.t1 vs. uniprot
Match: A0A2V3ITH0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 362 bits (928), Expect = 7.220e-117
Identity = 210/493 (42.60%), Postives = 300/493 (60.85%), Query Frame = 0
Query:    1 MGEIGLIVSPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRSVAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPRTVTTSKRVWMQPAHRQRYKFWNTSQLHLGNEPVQFPIDAADSNCALQGDFILRRNE-TFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSAQFLVPFVSSVKQGDNRGEGVDFFEDNSDYLRENPEYSAVALQVARQPDFVVVDVAIELYVGRNSLCLRDIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEGFEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLLFFLHDWHILSPAGLAKLRKSALEQIHKTALLVANEDGVAGLRSSWQLKEVYDGETEMASLKILGIIPGSSILLFIVVLATCNIFLRKRVASAQSQTGNHTVEISQQWLRNQVLRDINDICQLRFSEQRVAYRLVRTNPFQEPRLQLLP 492
            M E+ L VSPSVWN+IK+V  SL++ P  EFL+H L+Q KA  D+LRGR+VA  DTRLG+FSLH+T WG  RNR+LLL+ GT VIAIEL+ EFSFSS     + +++VW QP H+QRY   ++ ++H   EP   P++AA+    ++G+F +RR E T    Q   ++Y ++G YT+R  YL A+DN T+ C+A+ + K A F VPF + V   D   EG D+F    D       Y+ V +++  + +  + D  + ++ G+NS+C+      V G   + LCGLR +++FS AVGS          +   V +  +VMEM G A  PL ++  RQIRFL+  LF    WH  +  G +KLRK+ LEQI + AL+VANE+GVAG+R     +EV DG  E AS+K L IIPG+ I   +++  + N+ L   +A AQ +TG H+V IS Q+LR Q+  D+  +       Q + Y+LV+     E RLQLLP
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYLI-SSEEVHFMREPALLPVEAANIEGCVEGEFNMRRKEKTKDEFQQTIMEYSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFGAFEDKFYNRSIYADVDMKLRFKANLTIDDTKLYMFNGKNSICIGSKSLAVFGTAYL-LCGLRAQSAFSLAVGSLH-------EDDERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWHRPASEGASKLRKTTLEQIVQIALIVANEEGVAGIRRVKASREVLDGVQERASVKRLAIIPGALIGGMLLLFISMNVLLAICIAKAQRKTGQHSVRISTQFLRKQLRNDLLGMRAAHNEWQEIGYKLVQDA--DEQRLQLLP 482          
BLAST of Gcaud8005.t1 vs. uniprot
Match: A0A2V3IIK4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK4_9FLOR)

HSP 1 Score: 175 bits (444), Expect = 1.790e-45
Identity = 145/509 (28.49%), Postives = 242/509 (47.54%), Query Frame = 0
Query:    1 MGEIGLIVSPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRSVAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPRTVTTSKRVWMQPAHRQRYKFWNTS-QLHLGNEPVQFPIDAADSNCALQGDFILRR----NETFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSAQFLVPFVSSVKQGDNRGEGVDFFEDNSDYLRENPEYSAVALQVARQPDFVVVDVAIELYVGRNSLCLRDIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEGFEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLL--FFLHDWHILSPAGLAKLRKSALEQIHKTALLVANEDGVAGLRSSWQLKEVYDGETEMASLKILGIIPGSSILLFIVVLATCNIFLRKRVASAQSQTGNHT---------VEISQQWLRNQVLRDI-NDICQLRFSEQRVAYRLVRTNPFQEPRLQLLP 492
            M +I L + PS WNV+KF++ +++  P+LEFL+     +KAT DV+RG  V F ++ LG+ SLH+  WG +RN   LL+  ++V A EL+ EFSFS+    +   + VW+ P+H + Y F   S       EP QFP+ AA++   ++G+  +RR    NE  G   +   +Y +   Y +R  YL A DN +VLC+         F VP V  V       EGV   ++ S     N E    +L       +  V+  +++    N++C+R  + R K     +LC +    +F  A  S+   +  P     D  +  VV+   G   + +R  + R++R+L  +     L+ +          + K   E +    L+VANE+GV G R+    +    G+ + A++K L  +P + ++ F+V L    + L K +AS+    G             + S QWLR ++  D+ +D      S + ++ ++V         LQ+LP
Sbjct:    1 MQDIVLNLDPSTWNVLKFIILTIITTPLLEFLLQRFINTKATYDVMRGEHVQFAESNLGVLSLHSVYWGRRRNSIYLLLVASLVFASELIFEFSFSAQALDIAEPREVWLPPSHAEHYTFSRRSLDGPERREPFQFPVLAAET--CIKGESEMRRTGRSNEADGEF-ISGFEYHMEDTYVIRKPYL-ALDNSSVLCSVSTTIGRVSFFVPHVYLVNSSTG-AEGVLALKNTS-----NSENVRQSLTSGTFDSYGFVN-DVQVVASDNAVCIRS-RSRSK----TFLCAMYVMNAFILARTSEIWSDRVP-----DKTLLSVVLNATGQPVEGMRS-RTRKLRYLATVSGNALLNTFVEGRRPSHQLVTKDKTETLALLVLVVANEEGVGGSRNKIGKRSFVIGQAQTATMKRLAFVPIAILVSFLVFLLVVEVTLSKLIASSTKHQGRKIWGCTRAGSRADTSIQWLRERICEDLLHDGVFRNISSKELSLKIV------SGELQMLP 481          
BLAST of Gcaud8005.t1 vs. uniprot
Match: A0A2V3IIJ0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIJ0_9FLOR)

HSP 1 Score: 108 bits (271), Expect = 8.940e-22
Identity = 107/403 (26.55%), Postives = 179/403 (44.42%), Query Frame = 0
Query:    9 SPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRSVAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPRTVTTSKRVWMQPAHRQRYKFWNTSQLHLGNEPVQFPIDAADSNC-----ALQGDFILRRNETFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSAQFLVPFVSSVKQGDNRGEGVDFFEDNSD-YLRENPEYSAVALQVA--RQPDFVVVDVAIELYVGRNSLCLR-----DIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEGFEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLLFFLHDWHILSPAGLAKLR----KSALEQIHKTALLVANEDGVAGLRSSWQLKEV 394
            SPSVWNV+K+ + +LV+ P  E +  +L  S AT  V  G  +   D++LG+F+LH+   G +R R  L++   V++A+EL LE SFS+    VT S+ VW+ P H +RY         + +EP +  ++     C     A++ D + R   T         QY L+ N+T+R+ Y+   D+  V C+A    K A    P + S         GV+ F  + D  L  + E+       +  ++  FV        Y G  + C+      D    +    +  +C L+   + + A+    G            +   V + + G   + L     RQ+R    LL F+ +  IL P     L+    K +LE++   AL+V+ E  V+G+    + + V
Sbjct:   10 SPSVWNVLKWALFTLVITPAFEIMTASLMASSATARVQAGAQLELFDSQLGIFALHSRYAGKRRTRLWLVLGTAVLMALELWLEMSFSAAEVVVTVSEEVWVGPNHDERYM--RRENFSINDEPTRL-LETMSRQCIAGPRAMKRDSVQRATVTVLEEAEVIAQYSLTANWTVRAAYVREEDS-LVACDAVAETKWASVEAPNIVSQY-------GVEGFHSDCDPALGLDSEWFQTLHNESFTQRGAFVFEGERARAYSGTRATCVELDAGVDRAEDIDDVPLRLVCALQ--LNSTVAITLTAGLN----------IARCVALLLHGPGVETLAGSHARQLR----LLAFVAETRILWPGWSNTLKGMVQKRSLERVAMAALMVSGERAVSGVAERRERRRV 385          
The following BLAST results are available for this feature:
BLAST of Gcaud8005.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ITH0_9FLOR7.220e-11742.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIK4_9FLOR1.790e-4528.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIJ0_9FLOR8.940e-2226.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 430..500
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..336
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 354..405
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 406..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 337..353
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 407..429

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_831_length_17362_cov_4.155231contigNODE_831_length_17362_cov_4.155231:1314..2816 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8005.t1Gcaud8005.t1Gracilaria caudata M_176_S67 malemRNANODE_831_length_17362_cov_4.155231 1314..2816 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MGEIGLIVSPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRS
VAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPR
TVTTSKRVWMQPAHRQRYKFWNTSQLHLGNEPVQFPIDAADSNCALQGDF
ILRRNETFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSA
QFLVPFVSSVKQGDNRGEGVDFFEDNSDYLRENPEYSAVALQVARQPDFV
VVDVAIELYVGRNSLCLRDIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEG
FEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLLFFLHDW
HILSPAGLAKLRKSALEQIHKTALLVANEDGVAGLRSSWQLKEVYDGETE
MASLKILGIIPGSSILLFIVVLATCNIFLRKRVASAQSQTGNHTVEISQQ
WLRNQVLRDINDICQLRFSEQRVAYRLVRTNPFQEPRLQLLPTFVDSCEY
*
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