Gcaud8005.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8005.t1
Unique Name	Gcaud8005.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_831_length_17362_cov_4.155231	contig	NODE_831_length_17362_cov_4.155231:1314..2816 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8005	Gcaud8005	Gracilaria caudata M_176_S67 male	gene	NODE_831_length_17362_cov_4.155231 1314..2816 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8005.t1.stop1	Gcaud8005.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_831_length_17362_cov_4.155231 1314..1316 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8005.t1.CDS1	Gcaud8005.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_831_length_17362_cov_4.155231 1314..2816 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8005.t1.exon1	Gcaud8005.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_831_length_17362_cov_4.155231 1314..2816 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8005.t1.start1	Gcaud8005.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_831_length_17362_cov_4.155231 2814..2816 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8005.t1	Gcaud8005.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_831_length_17362_cov_4.155231 1314..2816 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_831_length_17362_cov_4.155231:1314..2816-
coding sequence from alignment at NODE_831_length_17362_cov_4.155231:1314..2816-

mRNA sequence

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MGEIGLIVSPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRS
VAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPR
TVTTSKRVWMQPAHRQRYKFWNTSQLHLGNEPVQFPIDAADSNCALQGDF
ILRRNETFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSA
QFLVPFVSSVKQGDNRGEGVDFFEDNSDYLRENPEYSAVALQVARQPDFV
VVDVAIELYVGRNSLCLRDIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEG
FEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLLFFLHDW
HILSPAGLAKLRKSALEQIHKTALLVANEDGVAGLRSSWQLKEVYDGETE
MASLKILGIIPGSSILLFIVVLATCNIFLRKRVASAQSQTGNHTVEISQQ
WLRNQVLRDINDICQLRFSEQRVAYRLVRTNPFQEPRLQLLPTFVDSCEY
*

spliced messenger RNA

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_831_length_17362_cov_4.155231:1314..2816- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAATCGGCCTCATTGTCTCACCTTCAGTTTGGAATGTTATCAA
ATTTGTTGTTTGTTCGCTTGTGCTAATTCCCATCTTGGAATTTCTTGTCC
ATGCATTAACGCAGAGTAAAGCTACGCTGGATGTCCTCCGTGGCCGATCT
GTCGCTTTCCGTGATACCCGTCTGGGTATGTTTTCCTTACACGCAACCTG
TTGGGGACCCAAGCGTAACCGATTTCTTCTTTTGATCACTGGAACGGTGG
TTATTGCTATCGAGCTCGTTCTTGAGTTCTCTTTCTCATCTATGCCACGG
ACAGTGACAACAAGCAAGCGAGTTTGGATGCAACCCGCCCACCGGCAGCG
ATACAAGTTTTGGAATACCTCTCAACTACACCTTGGCAATGAACCGGTGC
AATTCCCGATTGACGCTGCTGACTCGAATTGTGCCCTTCAAGGAGACTTC
ATTTTGCGCCGTAATGAAACATTTGGTGCAGGGCAAGTACGCAAACTACA
ATACTTTCTTAGTGGCAACTACACTATGCGCTCTCTATACCTTGACGCCA
GTGATAATGAAACAGTGTTATGCAACGCTGAGAGGGTGCGAAAAAGTGCG
CAGTTCTTAGTACCGTTTGTCTCATCCGTTAAGCAGGGTGATAATCGCGG
AGAGGGTGTTGACTTTTTCGAGGACAATAGTGACTACCTCAGAGAGAATC
CCGAGTACTCAGCCGTGGCTCTTCAAGTGGCGCGCCAACCAGATTTTGTT
GTGGTGGACGTAGCTATTGAGTTGTATGTCGGGCGCAATTCGCTTTGCTT
AAGAGATATCAAACACCGTGTTAAAGGGGATTTGGTCATTTACCTCTGTG
GCTTGAGAGGGAAAACGAGTTTCTCGTTTGCAGTCGGGTCCAAGGAGGGT
TTTGAATATGATCCAGCCAACGAGAGACGAGATGTCCTAGTACATCAGGT
TGTTATGGAGATGTTCGGGGATGCTTTTAAGCCCCTGCGCGAAGAGAAAG
AGCGACAGATACGTTTTCTCATTGTCCTGCTTTTCTTCCTCCATGATTGG
CATATACTTTCTCCTGCAGGTCTCGCAAAACTCCGGAAGAGTGCATTGGA
GCAGATACACAAAACAGCTCTGTTGGTGGCGAACGAAGATGGTGTTGCCG
GTCTGCGGAGCTCCTGGCAGCTCAAAGAAGTGTACGATGGGGAGACTGAG
ATGGCTTCGTTGAAGATCCTTGGCATCATACCTGGATCTTCAATATTGTT
GTTTATCGTTGTTCTTGCGACTTGTAACATTTTTCTGAGGAAAAGAGTTG
CCTCTGCGCAATCTCAAACTGGGAACCATACGGTTGAAATCTCGCAGCAA
TGGCTTCGAAACCAAGTGTTACGAGATATTAACGATATATGCCAACTCAG
ATTTTCCGAGCAACGCGTTGCGTATAGACTGGTCCGCACCAACCCATTCC
AAGAACCAAGACTGCAATTGCTGCCAACTTTCGTCGACAGTTGTGAATAT
TGA

protein sequence of Gcaud8005.t1

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MGEIGLIVSPSVWNVIKFVVCSLVLIPILEFLVHALTQSKATLDVLRGRS
VAFRDTRLGMFSLHATCWGPKRNRFLLLITGTVVIAIELVLEFSFSSMPR
TVTTSKRVWMQPAHRQRYKFWNTSQLHLGNEPVQFPIDAADSNCALQGDF
ILRRNETFGAGQVRKLQYFLSGNYTMRSLYLDASDNETVLCNAERVRKSA
QFLVPFVSSVKQGDNRGEGVDFFEDNSDYLRENPEYSAVALQVARQPDFV
VVDVAIELYVGRNSLCLRDIKHRVKGDLVIYLCGLRGKTSFSFAVGSKEG
FEYDPANERRDVLVHQVVMEMFGDAFKPLREEKERQIRFLIVLLFFLHDW
HILSPAGLAKLRKSALEQIHKTALLVANEDGVAGLRSSWQLKEVYDGETE
MASLKILGIIPGSSILLFIVVLATCNIFLRKRVASAQSQTGNHTVEISQQ
WLRNQVLRDINDICQLRFSEQRVAYRLVRTNPFQEPRLQLLPTFVDSCEY
*

mRNA from alignment at NODE_831_length_17362_cov_4.155231:1314..2816-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_831_length_17362_cov_4.155231:1314..2816- (Gracilaria caudata M_176_S67 male)
ATGGGAGAAATCGGCCTCATTGTCTCACCTTCAGTTTGGAATGTTATCAA
ATTTGTTGTTTGTTCGCTTGTGCTAATTCCCATCTTGGAATTTCTTGTCC
ATGCATTAACGCAGAGTAAAGCTACGCTGGATGTCCTCCGTGGCCGATCT
GTCGCTTTCCGTGATACCCGTCTGGGTATGTTTTCCTTACACGCAACCTG
TTGGGGACCCAAGCGTAACCGATTTCTTCTTTTGATCACTGGAACGGTGG
TTATTGCTATCGAGCTCGTTCTTGAGTTCTCTTTCTCATCTATGCCACGG
ACAGTGACAACAAGCAAGCGAGTTTGGATGCAACCCGCCCACCGGCAGCG
ATACAAGTTTTGGAATACCTCTCAACTACACCTTGGCAATGAACCGGTGC
AATTCCCGATTGACGCTGCTGACTCGAATTGTGCCCTTCAAGGAGACTTC
ATTTTGCGCCGTAATGAAACATTTGGTGCAGGGCAAGTACGCAAACTACA
ATACTTTCTTAGTGGCAACTACACTATGCGCTCTCTATACCTTGACGCCA
GTGATAATGAAACAGTGTTATGCAACGCTGAGAGGGTGCGAAAAAGTGCG
CAGTTCTTAGTACCGTTTGTCTCATCCGTTAAGCAGGGTGATAATCGCGG
AGAGGGTGTTGACTTTTTCGAGGACAATAGTGACTACCTCAGAGAGAATC
CCGAGTACTCAGCCGTGGCTCTTCAAGTGGCGCGCCAACCAGATTTTGTT
GTGGTGGACGTAGCTATTGAGTTGTATGTCGGGCGCAATTCGCTTTGCTT
AAGAGATATCAAACACCGTGTTAAAGGGGATTTGGTCATTTACCTCTGTG
GCTTGAGAGGGAAAACGAGTTTCTCGTTTGCAGTCGGGTCCAAGGAGGGT
TTTGAATATGATCCAGCCAACGAGAGACGAGATGTCCTAGTACATCAGGT
TGTTATGGAGATGTTCGGGGATGCTTTTAAGCCCCTGCGCGAAGAGAAAG
AGCGACAGATACGTTTTCTCATTGTCCTGCTTTTCTTCCTCCATGATTGG
CATATACTTTCTCCTGCAGGTCTCGCAAAACTCCGGAAGAGTGCATTGGA
GCAGATACACAAAACAGCTCTGTTGGTGGCGAACGAAGATGGTGTTGCCG
GTCTGCGGAGCTCCTGGCAGCTCAAAGAAGTGTACGATGGGGAGACTGAG
ATGGCTTCGTTGAAGATCCTTGGCATCATACCTGGATCTTCAATATTGTT
GTTTATCGTTGTTCTTGCGACTTGTAACATTTTTCTGAGGAAAAGAGTTG
CCTCTGCGCAATCTCAAACTGGGAACCATACGGTTGAAATCTCGCAGCAA
TGGCTTCGAAACCAAGTGTTACGAGATATTAACGATATATGCCAACTCAG
ATTTTCCGAGCAACGCGTTGCGTATAGACTGGTCCGCACCAACCCATTCC
AAGAACCAAGACTGCAATTGCTGCCAACTTTCGTCGACAGTTGTGAATAT
TGA

Coding sequence (CDS) from alignment at NODE_831_length_17362_cov_4.155231:1314..2816-

>Gcaud8005.t1 ID=Gcaud8005.t1|Name=Gcaud8005.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_831_length_17362_cov_4.155231:1314..2816- (Gracilaria caudata M_176_S67 male)
ATGGGAGAAATCGGCCTCATTGTCTCACCTTCAGTTTGGAATGTTATCAA
ATTTGTTGTTTGTTCGCTTGTGCTAATTCCCATCTTGGAATTTCTTGTCC
ATGCATTAACGCAGAGTAAAGCTACGCTGGATGTCCTCCGTGGCCGATCT
GTCGCTTTCCGTGATACCCGTCTGGGTATGTTTTCCTTACACGCAACCTG
TTGGGGACCCAAGCGTAACCGATTTCTTCTTTTGATCACTGGAACGGTGG
TTATTGCTATCGAGCTCGTTCTTGAGTTCTCTTTCTCATCTATGCCACGG
ACAGTGACAACAAGCAAGCGAGTTTGGATGCAACCCGCCCACCGGCAGCG
ATACAAGTTTTGGAATACCTCTCAACTACACCTTGGCAATGAACCGGTGC
AATTCCCGATTGACGCTGCTGACTCGAATTGTGCCCTTCAAGGAGACTTC
ATTTTGCGCCGTAATGAAACATTTGGTGCAGGGCAAGTACGCAAACTACA
ATACTTTCTTAGTGGCAACTACACTATGCGCTCTCTATACCTTGACGCCA
GTGATAATGAAACAGTGTTATGCAACGCTGAGAGGGTGCGAAAAAGTGCG
CAGTTCTTAGTACCGTTTGTCTCATCCGTTAAGCAGGGTGATAATCGCGG
AGAGGGTGTTGACTTTTTCGAGGACAATAGTGACTACCTCAGAGAGAATC
CCGAGTACTCAGCCGTGGCTCTTCAAGTGGCGCGCCAACCAGATTTTGTT
GTGGTGGACGTAGCTATTGAGTTGTATGTCGGGCGCAATTCGCTTTGCTT
AAGAGATATCAAACACCGTGTTAAAGGGGATTTGGTCATTTACCTCTGTG
GCTTGAGAGGGAAAACGAGTTTCTCGTTTGCAGTCGGGTCCAAGGAGGGT
TTTGAATATGATCCAGCCAACGAGAGACGAGATGTCCTAGTACATCAGGT
TGTTATGGAGATGTTCGGGGATGCTTTTAAGCCCCTGCGCGAAGAGAAAG
AGCGACAGATACGTTTTCTCATTGTCCTGCTTTTCTTCCTCCATGATTGG
CATATACTTTCTCCTGCAGGTCTCGCAAAACTCCGGAAGAGTGCATTGGA
GCAGATACACAAAACAGCTCTGTTGGTGGCGAACGAAGATGGTGTTGCCG
GTCTGCGGAGCTCCTGGCAGCTCAAAGAAGTGTACGATGGGGAGACTGAG
ATGGCTTCGTTGAAGATCCTTGGCATCATACCTGGATCTTCAATATTGTT
GTTTATCGTTGTTCTTGCGACTTGTAACATTTTTCTGAGGAAAAGAGTTG
CCTCTGCGCAATCTCAAACTGGGAACCATACGGTTGAAATCTCGCAGCAA
TGGCTTCGAAACCAAGTGTTACGAGATATTAACGATATATGCCAACTCAG
ATTTTCCGAGCAACGCGTTGCGTATAGACTGGTCCGCACCAACCCATTCC
AAGAACCAAGACTGCAATTGCTGCCAACTTTCGTCGACAGTTGTGAATAT
TGA