Gcaud7978.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7978.t1
Unique NameGcaud7978.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length264
Homology
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A2V3IQV7_9FLOR (40S ribosomal protein S4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQV7_9FLOR)

HSP 1 Score: 503 bits (1296), Expect = 7.310e-180
Identity = 241/263 (91.63%), Postives = 258/263 (98.10%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESRIKSKPVMV 263
            MARGPKKHLKRL+APSHWMLDKMGGVWAPRPSTGPHK+RECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNE FRLL+D+KGRF+LHLITKAEGAYKLCKVKRQQTGQKGVPYI THDARTIRYPDP++  DD+VRIN+++GKIED+LKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPK KGLRKS+IE+QESR+KS+PV+V
Sbjct:    1 MARGPKKHLKRLNAPSHWMLDKMGGVWAPRPSTGPHKMRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNETFRLLFDVKGRFILHLITKAEGAYKLCKVKRQQTGQKGVPYITTHDARTIRYPDPIVSADDSVRINMESGKIEDVLKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKQKGLRKSVIEDQESRLKSQPVVV 263          
BLAST of Gcaud7978.t1 vs. uniprot
Match: R7Q6M6_CHOCR (40S ribosomal protein S4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6M6_CHOCR)

HSP 1 Score: 483 bits (1244), Expect = 6.170e-172
Identity = 235/263 (89.35%), Postives = 250/263 (95.06%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESRIKSKPVMV 263
            MARGPKKHLKRL+APSHWMLDKMGGVWAPRPSTGPHK+RE LPLNLILRNRL+YAL GREAN IVMQRLIKVDGKVRTDKTFPAGFMDV+TI++T+E FRLLYD+KGRF LHLITK EGAYKLCKVKRQQTG KGVPYIATHDARTIRYPDP+IKVDDTVR+NI TGKIEDILKFEVGNLCMITGGHNIGR+GIIQLREKHPGSHEI+RVRDA GHDFATRKTNVFIIGKGSE AISL KNKGL+KSIIEEQE+R K+KPV V
Sbjct:    1 MARGPKKHLKRLNAPSHWMLDKMGGVWAPRPSTGPHKMRESLPLNLILRNRLRYALTGREANMIVMQRLIKVDGKVRTDKTFPAGFMDVVTIEKTDETFRLLYDVKGRFKLHLITKDEGAYKLCKVKRQQTGMKGVPYIATHDARTIRYPDPVIKVDDTVRVNIGTGKIEDILKFEVGNLCMITGGHNIGRIGIIQLREKHPGSHEIIRVRDAMGHDFATRKTNVFIIGKGSEPAISLLKNKGLKKSIIEEQEAREKAKPVAV 263          
BLAST of Gcaud7978.t1 vs. uniprot
Match: M2Y295_GALSU (40S ribosomal protein S4 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y295_GALSU)

HSP 1 Score: 404 bits (1037), Expect = 2.040e-140
Identity = 191/259 (73.75%), Postives = 222/259 (85.71%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESRIKSK 259
            M RGPKKH+KRL+AP HWML K+GG+WAPRPS+GPHKLRE LPL LILRNRLKYALN REA AI+MQRL+KVDGKVRTDKTFPAGFMDVI ++RTNE FRLLYD+KGRF LH IT  EG YKLC+VKR Q G +G+PYIATHD RTIRYPDP IK +DTV ++++TGK+ D LKFEVGNLCMITGGHNIGRVG+IQ REKHPGS EI+ VRDA G +FAT+  NVF+IGKG++  +SLPK KG+R SI+EEQE  +K +
Sbjct:    1 MPRGPKKHMKRLAAPKHWMLSKLGGIWAPRPSSGPHKLRESLPLLLILRNRLKYALNNREAVAILMQRLVKVDGKVRTDKTFPAGFMDVIELERTNETFRLLYDVKGRFRLHRITPEEGKYKLCRVKRAQMGVRGIPYIATHDGRTIRYPDPAIKHNDTVVLDLETGKVTDFLKFEVGNLCMITGGHNIGRVGLIQHREKHPGSTEIIHVRDARGQEFATQLNNVFVIGKGNQPFVSLPKGKGIRFSILEEQEKMMKER 259          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A7S3DCZ2_9EUKA (40S ribosomal protein S4 n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DCZ2_9EUKA)

HSP 1 Score: 396 bits (1018), Expect = 1.380e-137
Identity = 186/255 (72.94%), Postives = 219/255 (85.88%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESR 255
            M RGPKKH+KRL+AP HWMLDKMGGV+APRPS GPHKLRE LPL L+LRNRLKYALNG E N I+MQRL++VDGKVRTDKTFPAGFMDVITI++TNE FRLL+D+KGRF+LH I+  E  YKLCKVKR + GQKG P + THD RTIRYP P IKV+DTVR++I+TGKI D +KFE GNL M+TGGHN+GRVG I+ RE+HPGS +I+ V+DAAGH FATR TNVF+IGKG++ A+SLP+NKG+R SIIEEQ  R
Sbjct:    1 MPRGPKKHMKRLNAPKHWMLDKMGGVFAPRPSAGPHKLRESLPLILLLRNRLKYALNGTEVNTILMQRLVQVDGKVRTDKTFPAGFMDVITIEKTNERFRLLFDVKGRFILHRISNDEAKYKLCKVKRDELGQKGAPLVVTHDGRTIRYPHPDIKVNDTVRVDIETGKIIDFIKFETGNLVMVTGGHNLGRVGTIEHRERHPGSFDIIHVKDAAGHKFATRLTNVFVIGKGNKPAVSLPRNKGVRLSIIEEQSRR 255          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A7S2ZET9_9RHOD (40S ribosomal protein S4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZET9_9RHOD)

HSP 1 Score: 392 bits (1008), Expect = 5.310e-136
Identity = 191/255 (74.90%), Postives = 214/255 (83.92%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESR 255
            MARG KKH+KRL+AP HWMLDK+ G++APRPS GPHKLRECLPL +ILRNRLKYALNG EAN IV QRL+KVDGKVRTD TFP+GFMDVI I+RTNE FRLLYD+KGRF LH IT  E  YKLCKV R Q G   VPYIATHD R IRYPDPLIKVDDTV I+I+TGK+ D  K+++GNL M+TGGHNIGRVG I  REKHPGS EIVR+RDA GHDFATRK NVFIIGKG+   ISLPK KG++K+IIEE E+R
Sbjct:    1 MARGQKKHMKRLAAPKHWMLDKLTGIFAPRPSPGPHKLRECLPLVIILRNRLKYALNGAEANQIVKQRLLKVDGKVRTDVTFPSGFMDVIHIERTNETFRLLYDVKGRFKLHRITTEEAKYKLCKVNRAQLGPNSVPYIATHDGRYIRYPDPLIKVDDTVMIDINTGKVIDFAKYDLGNLVMVTGGHNIGRVGTIVTREKHPGSTEIVRIRDANGHDFATRKGNVFIIGKGTTPLISLPKEKGIKKTIIEEFEAR 255          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A5J4YM28_PORPP (40S ribosomal protein S4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM28_PORPP)

HSP 1 Score: 391 bits (1004), Expect = 2.240e-135
Identity = 179/253 (70.75%), Postives = 219/253 (86.56%), Query Frame = 0
Query:    3 RGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESR 255
            RGPKKHLKRL+AP+HWMLDK+ GVWAP+PS+GPHK RECLPL +ILRNRLKYALNGRE   IVMQRL+KVDGKVRTD+ +PAGFMDV+++++TNEIFRLLYD+KGRFVLH I   E  YKLCKV RQ+ G +G+PYIATHD+RTIR+PDPLIKV D+VR++I+TGKI D +KFEVGNLCM T GHN GRVG I   EKHPGS E+++++DAAGH F TRK+NVF+IGKG++  +SLPK+KG++KS+I  QE +
Sbjct:    4 RGPKKHLKRLAAPNHWMLDKLTGVWAPKPSSGPHKTRECLPLMIILRNRLKYALNGREVMQIVMQRLVKVDGKVRTDRCYPAGFMDVVSLEKTNEIFRLLYDVKGRFVLHRIGAEEAKYKLCKVTRQEKGPRGIPYIATHDSRTIRFPDPLIKVADSVRVDIETGKIIDFIKFEVGNLCMTTAGHNQGRVGTIMGTEKHPGSFEMIKIQDAAGHVFVTRKSNVFVIGKGAQPIVSLPKDKGIKKSVISVQEEK 256          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A7J7IFP1_9RHOD (40S ribosomal protein S4 n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7J7IFP1_9RHOD)

HSP 1 Score: 386 bits (992), Expect = 1.210e-133
Identity = 181/255 (70.98%), Postives = 219/255 (85.88%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESR 255
            MARGPKKHLKRL+AP HWML K+GG+WAPRPS GPHKLRECLPL +ILRNRLKYAL GREA  I+MQRL++VDGKVRTD+TFPAGFMDVI I++TNE FRLLYD KGRFVLH IT  EG YKLC++KRQQ G +G+PYI THD RTIRYPDPLI+V DTV ++I+TGKI + +KF+VG LCMITGGHNIGRVG++Q REKHPG+ EIV +RDAAG +FAT+ +NVF+IG+  +  +SLP+ KG++ ++ EE+E R
Sbjct:    1 MARGPKKHLKRLAAPRHWMLAKLGGIWAPRPSAGPHKLRECLPLIIILRNRLKYALTGREAIQILMQRLVRVDGKVRTDRTFPAGFMDVIRIEKTNETFRLLYDTKGRFVLHRITPEEGKYKLCRIKRQQLGARGIPYIVTHDGRTIRYPDPLIRVHDTVVLDIETGKITEFVKFDVGALCMITGGHNIGRVGVVQHREKHPGATEIVHLRDAAGREFATKISNVFVIGR-DKPLVSLPRGKGVKLTVQEERERR 254          
BLAST of Gcaud7978.t1 vs. uniprot
Match: RS4_BOMMO (40S ribosomal protein S4 n=42 Tax=cellular organisms TaxID=131567 RepID=RS4_BOMMO)

HSP 1 Score: 380 bits (977), Expect = 2.880e-131
Identity = 180/259 (69.50%), Postives = 215/259 (83.01%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESRIKSK 259
            MARGPKKHLKRL+AP  WMLDK+GGV+APRPSTGPHKLRECLPL + LRNRLKYAL G E   IV QRLIKVDGKVRTD T+PAGFMDV++I++TNE+FRL+YD+KGRF +H IT  E  YKLCKVKR  TG K VPY+ THD RTIRYPDPLIKV+D+++++I T KI D +KFE GNLCMITGG N+GRVG I  RE+HPGS +IV ++D+ GH FATR  NVFIIGKG++A ISLP+ KG+R +I EE++ RI +K
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 259          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A164Q880_9CRUS (40S ribosomal protein S4 n=2 Tax=Daphnia TaxID=6668 RepID=A0A164Q880_9CRUS)

HSP 1 Score: 379 bits (973), Expect = 1.130e-130
Identity = 181/259 (69.88%), Postives = 214/259 (82.63%), Query Frame = 0
Query:    1 MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESRIKSK 259
            MARGPKKHLKRL+AP  WMLDK+GGV+APRPSTGPHKLRE LPL + LRNRLKYALN  E   IVMQRLIKVDGKVRTD  +PAGFMDVITID+T E FRL+YD+KGRF +H IT  E  YKLCKV+R Q G KG+P+I THD RTIRYPDPL+KV+DT++++I+T KI D +KF+ GNLCMITGG N+GRVG I  RE+HPGS +IV V+DA GH FATR  NVFIIGKGS+A ISLP++KG++ SI EE+  R+ +K
Sbjct:    1 MARGPKKHLKRLAAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLVVFLRNRLKYALNNSEVTKIVMQRLIKVDGKVRTDSNYPAGFMDVITIDKTGEYFRLVYDVKGRFAIHRITAEEAKYKLCKVRRVQVGPKGIPFITTHDGRTIRYPDPLVKVNDTIQLDIETNKIMDFIKFDSGNLCMITGGRNLGRVGTIINRERHPGSFDIVHVKDALGHLFATRLNNVFIIGKGSKAYISLPRDKGVKLSIAEERNKRLAAK 259          
BLAST of Gcaud7978.t1 vs. uniprot
Match: A0A1X6NKM6_PORUM (40S ribosomal protein S4 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKM6_PORUM)

HSP 1 Score: 378 bits (971), Expect = 1.160e-130
Identity = 174/237 (73.42%), Postives = 213/237 (89.87%), Query Frame = 0
Query:   19 MLDKMGGVWAPRPSTGPHKLRECLPLNLILRNRLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFRLLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYPDPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREKHPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIEEQESR 255
            ML K+GG++APRPSTGPHKLRECLPL +ILRNRLKYALNGREA  I+MQRL+KVDGKVRTD+TFPAGFMDV++I+RTNE+FRLLYD+KGRFVLH I K E AYKLCKVKRQQTG + +P++ATHD RTIRYPDP I+VDDTV I+I++GKI D++KF+VGNL M+TGGHNIGRVG++ LREKHPGS EIVR+RDA GH+FAT+KTNVFIIGKG++  +SLPK+ G++++I+E  E +
Sbjct:    1 MLGKLGGIFAPRPSTGPHKLRECLPLVIILRNRLKYALNGREAMTILMQRLVKVDGKVRTDQTFPAGFMDVVSIERTNELFRLLYDVKGRFVLHRIAKEEAAYKLCKVKRQQTGPRAIPFVATHDGRTIRYPDPTIRVDDTVMIDIESGKIIDVVKFDVGNLVMVTGGHNIGRVGVMALREKHPGSTEIVRIRDADGHEFATKKTNVFIIGKGNKGLVSLPKHNGIKQTILERAEQK 237          
The following BLAST results are available for this feature:
BLAST of Gcaud7978.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQV7_9FLOR7.310e-18091.6340S ribosomal protein S4 n=1 Tax=Gracilariopsis ch... [more]
R7Q6M6_CHOCR6.170e-17289.3540S ribosomal protein S4 n=1 Tax=Chondrus crispus ... [more]
M2Y295_GALSU2.040e-14073.7540S ribosomal protein S4 n=1 Tax=Galdieria sulphur... [more]
A0A7S3DCZ2_9EUKA1.380e-13772.9440S ribosomal protein S4 n=2 Tax=Palpitomonas bili... [more]
A0A7S2ZET9_9RHOD5.310e-13674.9040S ribosomal protein S4 n=2 Tax=Rhodosorus marinu... [more]
A0A5J4YM28_PORPP2.240e-13570.7540S ribosomal protein S4 n=1 Tax=Porphyridium purp... [more]
A0A7J7IFP1_9RHOD1.210e-13370.9840S ribosomal protein S4 n=3 Tax=cellular organism... [more]
RS4_BOMMO2.880e-13169.5040S ribosomal protein S4 n=42 Tax=cellular organis... [more]
A0A164Q880_9CRUS1.130e-13069.8840S ribosomal protein S4 n=2 Tax=Daphnia TaxID=666... [more]
A0A1X6NKM6_PORUM1.160e-13073.4240S ribosomal protein S4 n=1 Tax=Porphyra umbilica... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 42..106
e-value: 1.8E-4
score: 30.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 44..90
e-value: 9.0E-7
score: 28.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 51..112
e-value: 2.48191E-5
score: 39.5402
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 212..258
e-value: 1.4E-20
score: 72.7
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 175..245
e-value: 1.5E-32
score: 113.2
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 95..169
e-value: 4.2E-31
score: 106.6
IPR038237Ribosomal protein S4e, central domain superfamilyGENE3D2.40.50.740coord: 122..172
e-value: 1.3E-26
score: 94.1
IPR000876Ribosomal protein S4ePIRSFPIRSF002116RPS4a_RPS4ecoord: 1..242
e-value: 1.4E-94
score: 313.7
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 1..256
IPR000876Ribosomal protein S4eHAMAPMF_00485Ribosomal_S4ecoord: 7..238
score: 35.528576
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 3..39
e-value: 1.8E-20
score: 72.7
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 1..117
e-value: 6.6E-60
score: 202.2
NoneNo IPR availablePANTHERPTHR11581:SF040S RIBOSOMAL PROTEIN S4coord: 1..256
NoneNo IPR availablePROSITEPS50889S4coord: 42..105
score: 10.080766
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 53..95
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 8..22
IPR041982Ribosomal protein S4, KOW domainCDDcd06087KOW_RPS4coord: 175..229
e-value: 1.81749E-26
score: 96.0455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1299_length_11632_cov_4.409930contigNODE_1299_length_11632_cov_4.409930:1851..2642 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7978.t1Gcaud7978.t1Gracilaria caudata M_176_S67 malemRNANODE_1299_length_11632_cov_4.409930 1851..2642 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7978.t1 ID=Gcaud7978.t1|Name=Gcaud7978.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MARGPKKHLKRLSAPSHWMLDKMGGVWAPRPSTGPHKLRECLPLNLILRN
RLKYALNGREANAIVMQRLIKVDGKVRTDKTFPAGFMDVITIDRTNEIFR
LLYDIKGRFVLHLITKAEGAYKLCKVKRQQTGQKGVPYIATHDARTIRYP
DPLIKVDDTVRINIDTGKIEDILKFEVGNLCMITGGHNIGRVGIIQLREK
HPGSHEIVRVRDAAGHDFATRKTNVFIIGKGSEAAISLPKNKGLRKSIIE
EQESRIKSKPVMV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR03227740S_S4_C
IPR014722Rib_L2_dom2
IPR013845Ribosomal_S4e_central_region
IPR038237Ribosomal_S4e_central_sf
IPR000876Ribosomal_S4e
IPR013843Ribosomal_S4e_N
IPR036986S4_RNA-bd_sf
IPR018199Ribosomal_S4e_N_CS
IPR041982KOW_RPS4