Gcaud7870.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7870.t1
Unique NameGcaud7870.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length243
Homology
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A2V3IFP7_9FLOR (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFP7_9FLOR)

HSP 1 Score: 275 bits (702), Expect = 3.440e-90
Identity = 139/217 (64.06%), Postives = 176/217 (81.11%), Query Frame = 0
Query:    1 MSGWDDDE-WDADPAPTAPTIPAPSAYSNEAVLGNWDDEDQSEEEEPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKTN 216
            M+ WDDD+ WDA P P      AP+ +++   LGNWDDEDQS++E+ +LKK  APMKPSKLRAKAL         RE+++++ARQKE+DEMDAVQRKIRQQQIVEEAD EN K+LFMV   S+ M PP++PTLD+FKP++DAD+SKFA+M+G+RCA LN NP+R+ R+M F+KE+LRV V+ LGPDDTK LSTFVGVLSNEKR+EFK++KG KKK+N
Sbjct:    1 MASWDDDDDWDAHPPP------APTFHASSNALGNWDDEDQSDDEQIELKKAPAPMKPSKLRAKALKEKEDQQRQREVQRVLARQKELDEMDAVQRKIRQQQIVEEADLENAKELFMVAAPSDAMAPPSQPTLDDFKPQSDADFSKFARMMGDRCAALNDNPKRSARFMHFIKEMLRVAVKDLGPDDTKQLSTFVGVLSNEKRDEFKRAKGIKKKSN 211          
BLAST of Gcaud7870.t1 vs. uniprot
Match: R7Q2T7_CHOCR (Translation initiation factor eIF3, subunit J n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2T7_CHOCR)

HSP 1 Score: 208 bits (530), Expect = 5.240e-64
Identity = 124/223 (55.61%), Postives = 165/223 (73.99%), Query Frame = 0
Query:    1 MSGWDDDEWDADPAPT-APTIPAPSAYSNEAVLGNWDDEDQSEEEEP-QLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAEL-NINP----RRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKTN 216
            MS WDD++W+AD  P+ AP++P P+A      +G        EEEE   LKKPSAPMKPSK RA ALXXXXXXX      + +AR+KEM+E+ AV+RK+RQQ++VE+AD EN KDLFM G+++ GM PPAEPT+D FKP T+ DY+K+A MI E C +L NIN     ++ G Y+ FVK+++R + + L  +DTKDLSTF+G+LSNEKR++FKKSKG+KKKT+
Sbjct:    1 MSNWDDEDWEADSGPSPAPSLPVPAAGG----MGXXXXXXLPEEEEDISLKKPSAPMKPSKARALALXXXXXXXQRLATARAIAREKEMEELSAVERKMRQQKLVEQADLENVKDLFMEGSSNGGMRPPAEPTIDTFKPVTEEDYNKYAAMISEHCVKLSNINSPTKKKQMGLYVSFVKQLMRGLAQELSQEDTKDLSTFMGLLSNEKRDQFKKSKGYKKKTS 219          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A5J4Z7B4_PORPP (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7B4_PORPP)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-20
Identity = 76/229 (33.19%), Postives = 112/229 (48.91%), Query Frame = 0
Query:    8 EWDADPAPTAPTI-PAPSAYSNEAVLGNWDDEDQSEEEEPQLK-------------------KPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEP-PAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            +W+AD     P + PA       AV   WD+EDQ  EEE                       + S P    +L  + +         +  +K  A +KE++ +   +R+ R Q++VE+AD EN KDLFM     +  +  P EPTLDN   +T  D  KF K++ E+ + L  +PRR  RYM+ +K +LR     L  DD KDL++   VL+NEK +    ++G KKKT
Sbjct:   62 DWEADDFEVKPVLQPA-------AVKATWDEEDQESEEEVAAPXXXXXXASAHESAVNGSEAESSKPKSRKQLLEEKIKLREAEEARKARDKADALEKELEGLSVAERRARMQEMVEKADLENAKDLFMDAAPDDDEDADPDEPTLDNIALKTSKDDEKFVKLLVEKISPL-YHPRRPERYMNVLKSILREGTGELDADDVKDLASTCNVLANEKLKAKSAAQGKKKKT 282          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A7J6ESJ1_CANSA (Eukaryotic translation initiation factor 3 subunit J n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6ESJ1_CANSA)

HSP 1 Score: 86.3 bits (212), Expect = 7.200e-17
Identity = 64/220 (29.09%), Postives = 115/220 (52.27%), Query Frame = 0
Query:    1 MSGWDDDEWDADPAPTAPTIPAPSAYSNEAVLGN-----WDDEDQSEEEEPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            M  W+D+       P   T P  S +++E V  N     W+D+D+S+      + P A   P K   KA             +K+ A + + + +D V  K+RQQ++VEEAD+++TK+LF    A +G     + TLDNF P++++D+ ++A++I  +         ++  Y++ +K V+R+    L   D KD+++ +  ++NEK +  K++   KKKT
Sbjct:    1 MEDWEDEHI----PPVITTEPLSSKWADEDVDENDVKDSWEDDDESQPATEXARNPPADKAPKKSSVKAAD-----------KKVKAVESKEEPLDPVAEKLRQQRLVEEADYKSTKELF----AKKGE----DKTLDNFIPKSESDFQEYAELISHKLLPFE----KSFHYINLLKAVMRLATTSLKAADAKDVASSITAIANEKLKLEKEANAGKKKT 193          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A7S0G7Z8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7Z8_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-15
Identity = 61/198 (30.81%), Postives = 104/198 (52.53%), Query Frame = 0
Query:   26 YSNEAVLGNWDDEDQSEEEEPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAV---QRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKRE-----EFKKSKGFKKKT 215
            + ++ V  NWDDE              + M   K + K L         RE +   A++K+  +M+A+   ++K+ +Q++VEEADF+N KD+FM G++S+      + TLD   P+   +  K+ +++  +   +  +  R+ R + F K+VLR +   L  DDTK+LS+ + V+SNEK +     + KK K  KK T
Sbjct:   10 FEHKDVKANWDDEXXXXXXXXAPPAEPSQMSARKKKEKDLQAKIKEREEREAQYRAAQRKQEIDMEALTDAEKKLARQKLVEEADFQNAKDMFMHGDSSDVKAETGKETLDGMSPKGSKELKKYCELLVPKLNMVMDSNVRSHR-LQFFKDVLRGITADLSVDDTKELSSHLNVISNEKIQVNKGPQAKKGKAKKKTT 206          
BLAST of Gcaud7870.t1 vs. uniprot
Match: V7C5C1_PHAVU (Eukaryotic translation initiation factor 3 subunit J n=2 Tax=Phaseoleae TaxID=163735 RepID=V7C5C1_PHAVU)

HSP 1 Score: 78.6 bits (192), Expect = 5.740e-14
Identity = 65/199 (32.66%), Postives = 108/199 (54.27%), Query Frame = 0
Query:   27 SNEAVLGNWDDEDQSEEE---------EPQLKKPSAP-MKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            S + +   WDDED  E +         EP    P+AP +K ++  +K  XXXX     + +E I    KE + +DAV  K+RQQ+++EEAD+++TK+LF  G          E  LD F P++++D+ ++A++I  R         ++  YM  +K V+R+ +  L   D KD+++ V  ++NEK +  K++   KKKT
Sbjct:   16 SKDPIKSKWDDEDVDENDVKDSWEDXDEP-APAPAAPAVKTTEKASKXXXXXXTDKKGKTVEPI----KEEEPLDAVAEKLRQQRLIEEADYKSTKELFGGGKD--------EKDLDTFIPKSESDFLEYAELISHRLRSFE----KSFHYMGLLKAVMRLSMTSLKGADAKDIASSVTAIANEKIKAEKEANAGKKKT 197          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A8B8KGI6_ABRPR (Eukaryotic translation initiation factor 3 subunit J n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KGI6_ABRPR)

HSP 1 Score: 77.8 bits (190), Expect = 9.450e-14
Identity = 59/199 (29.65%), Postives = 111/199 (55.78%), Query Frame = 0
Query:   23 PSAYSNEAVLGNWDDEDQSEEE-----EPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINP-RRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            P   S ++    WDDED  E++     E + +   AP+ P+   AK +         R+ EK     K  + +D V  K+RQQ++VEEAD+++TK+LF  G  ++      E  +D+F P++++D+S++A++I ++     ++P  ++  Y+  +K V+R+ +  L   D KD+++ +  ++NEK +  K++   KKKT
Sbjct:   10 PPLLSKDSPRNKWDDEDVEEDDVKESWEDEDEPAQAPVAPA---AKPVEKAPKISSERDTEKSG---KNEEPLDPVAEKLRQQRLVEEADYKSTKELF--GARAD------EKNIDSFIPKSESDFSEYAELISDK-----LHPFEKSFHYIGLLKAVMRLSMTSLKGADAKDIASSITAIANEKLKAEKEANAGKKKT 189          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A2G9HMQ7_9LAMI (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HMQ7_9LAMI)

HSP 1 Score: 77.8 bits (190), Expect = 9.960e-14
Identity = 65/216 (30.09%), Postives = 111/216 (51.39%), Query Frame = 0
Query:    8 EWDADPAPTAPTIPAPSAYSNEAVLGNWDDEDQSE-------EEEPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINP-RRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            +W+ +P P   T         E +  NWDDED  E       E EP     + P  P K+  KA              K +   KE   +D ++ K+RQQ++VEEAD+++T +LF    A +G     E TLDNF P++++D++++A+++  +     I P  ++  Y+  +K V+R+ +  L   D K++++ V  ++NEK +  K++   KKKT
Sbjct:    3 DWEDEPIPDLLT-------KKEPLRNNWDDEDLDEVKESWEDEXEPAPAPKAEPPPPEKVPKKATEKSVEKKA-----KAVEAAKEAP-LDPIEEKLRQQRLVEEADYKSTAELF----AKKGD----EKTLDNFIPKSESDFAEYAELVSHK-----IRPYEKSYHYIGLLKAVMRLSLTNLKGADVKEVASSVTAIANEKIKAEKEANAGKKKT 192          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A2P5BVJ4_PARAD (Eukaryotic translation initiation factor 3 subunit J n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BVJ4_PARAD)

HSP 1 Score: 77.4 bits (189), Expect = 2.390e-13
Identity = 45/137 (32.85%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   79 KIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKKT 215
            K +  ++E D +D V  K+RQQ++VEEAD+++TK+LF    +++G +   + TLDNF P++++D+ ++A++I  R         ++  Y+  +K V+R+ +  L   D KD+++ +  ++NEK +  K++   KKKT
Sbjct:   69 KTIETKEEPDPLDPVAEKLRQQRLVEEADYKSTKELF----STKGSD---DKTLDNFIPKSESDFQEYAELISHRLLPFE----KSFHYIGLLKAVMRLSMNSLKAADAKDVASSIAAIANEKLKLEKEANAGKKKT 194          
BLAST of Gcaud7870.t1 vs. uniprot
Match: A0A7J7CJ17_TRIWF (Eukaryotic translation initiation factor 3 subunit J n=4 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CJ17_TRIWF)

HSP 1 Score: 77.0 bits (188), Expect = 2.740e-13
Identity = 60/202 (29.70%), Postives = 107/202 (52.97%), Query Frame = 0
Query:   21 PAPSAYSNEAVLGNWDDEDQSE-------EEEPQLKKPSAPMKPSKLRAKALXXXXXXXXXREIEKIMARQKEMDEMDAVQRKIRQQQIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMIGERCAELNINP-RRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNEKREEFKKSKGFKKK 214
            P PS    E    +WDDED  E       E E +     AP  P++  +K +            +KI A++ E + +D V  K+RQQ++VEEAD+++T +LF  G   +      E +LDNF P+++ D+ ++A++I  +     ++P  ++  Y+  +K V+R+ +  L   D K++++ V  ++NEK +  K++   KKK
Sbjct:   31 PIPSLLKKEQPKSSWDDEDVEENDIKESWEXEDEPTSEPAPDPPAEKVSKKIEAKPSQE-----KKITAKEVEQEPLDPVAEKLRQQRLVEEADYQSTTELF--GKRGD------EKSLDNFIPKSENDFVEYAELISYK-----LHPYEKSFHYIGLLKAVMRLSMTTLKTSDAKEIASSVTAIANEKLKAEKEANAGKKK 214          
The following BLAST results are available for this feature:
BLAST of Gcaud7870.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFP7_9FLOR3.440e-9064.06Eukaryotic translation initiation factor 3 subunit... [more]
R7Q2T7_CHOCR5.240e-6455.61Translation initiation factor eIF3, subunit J n=1 ... [more]
A0A5J4Z7B4_PORPP1.280e-2033.19Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J6ESJ1_CANSA7.200e-1729.09Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S0G7Z8_9RHOD1.520e-1530.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
V7C5C1_PHAVU5.740e-1432.66Eukaryotic translation initiation factor 3 subunit... [more]
A0A8B8KGI6_ABRPR9.450e-1429.65Eukaryotic translation initiation factor 3 subunit... [more]
A0A2G9HMQ7_9LAMI9.960e-1430.09Eukaryotic translation initiation factor 3 subunit... [more]
A0A2P5BVJ4_PARAD2.390e-1332.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J7CJ17_TRIWF2.740e-1329.70Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
IPR023194Eukaryotic translation initiation factor 3-like domain superfamilyGENE3D1.10.246.60Eukaryotic translation initiation factor 3 like domainscoord: 130..210
e-value: 9.3E-18
score: 66.5
IPR013906Eukaryotic translation initiation factor 3 subunit JPFAMPF08597eIF3_subunitcoord: 1..242
e-value: 1.5E-37
score: 129.9
IPR013906Eukaryotic translation initiation factor 3 subunit JPANTHERPTHR21681EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Jcoord: 1..242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1238_length_12255_cov_4.374630contigNODE_1238_length_12255_cov_4.374630:6345..7073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7870.t1Gcaud7870.t1Gracilaria caudata M_176_S67 malemRNANODE_1238_length_12255_cov_4.374630 6345..7073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MSGWDDDEWDADPAPTAPTIPAPSAYSNEAVLGNWDDEDQSEEEEPQLKK
PSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKEMDEMDAVQRKIRQQ
QIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMI
GERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNE
KREEFKKSKGFKKKTNKKSNVRVDKMTDMRNDVYDDFADDFM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023194eIF3-like_dom_sf
IPR013906eIF3j