Gcaud7870.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7870.t1
Unique Name	Gcaud7870.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1238_length_12255_cov_4.374630	contig	NODE_1238_length_12255_cov_4.374630:6345..7073 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3885.XP_007152569.1
PFAMs	eIF3_subunit
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03245
KEGG Pathway	ko03013,map03013
Evalue	2.56e-13
EggNOG OGs	KOG4813@1\|root,KOG4813@2759\|Eukaryota,37T5P@33090\|Viridiplantae,3GFQB@35493\|Streptophyta,4JJKE@91835\|fabids
Description	component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG category	J
BRITE	ko00000,ko00001,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7870	Gcaud7870	Gracilaria caudata M_176_S67 male	gene	NODE_1238_length_12255_cov_4.374630 6345..7073 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7870.t1.start1	Gcaud7870.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1238_length_12255_cov_4.374630 6345..6347 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7870.t1.CDS1	Gcaud7870.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1238_length_12255_cov_4.374630 6345..7073 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7870.t1.exon1	Gcaud7870.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1238_length_12255_cov_4.374630 6345..7073 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7870.t1.stop1	Gcaud7870.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1238_length_12255_cov_4.374630 7071..7073 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7870.t1	Gcaud7870.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1238_length_12255_cov_4.374630 6345..7073 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+
coding sequence from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+

mRNA sequence

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MSGWDDDEWDADPAPTAPTIPAPSAYSNEAVLGNWDDEDQSEEEEPQLKK
PSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKEMDEMDAVQRKIRQQ
QIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMI
GERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNE
KREEFKKSKGFKKKTNKKSNVRVDKMTDMRNDVYDDFADDFM*

spliced messenger RNA

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGATGGGATGATGATGAGTGGGATGCAGATCCAGCCCCCACGGC
ACCCACAATACCTGCTCCATCTGCGTACAGTAATGAAGCAGTGCTGGGTA
ACTGGGATGATGAGGACCAATCCGAGGAAGAGGAACCGCAACTGAAGAAG
CCGTCAGCCCCCATGAAACCCTCCAAGCTTCGCGCGAAGGCTCTCAAGGA
GAAGGAAGAACAGGAACGACAGCGAGAGATAGAGAAAATCATGGCGCGTC
AAAAAGAGATGGATGAAATGGATGCAGTACAACGAAAGATTCGTCAGCAA
CAGATCGTCGAAGAAGCGGACTTCGAAAACACAAAGGACCTCTTTATGGT
TGGCAACGCTTCAGAAGGAATGGAGCCACCTGCCGAACCCACATTAGACA
ATTTTAAACCAGAAACGGATGCAGACTACTCCAAATTCGCGAAGATGATT
GGTGAGCGATGCGCAGAGCTCAACATCAACCCGAGAAGGACGGGACGCTA
CATGGACTTTGTCAAAGAGGTGCTCCGAGTAGTTGTTCGAGGACTCGGAC
CAGACGACACAAAAGATCTTTCAACGTTTGTTGGAGTCTTAAGTAACGAA
AAGAGAGAGGAGTTCAAAAAGTCTAAAGGATTCAAGAAGAAGACAAACAA
GAAGTCGAACGTGAGAGTAGACAAGATGACTGACATGCGTAATGACGTTT
ACGATGACTTTGCCGACGACTTTATGTAA

protein sequence of Gcaud7870.t1

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MSGWDDDEWDADPAPTAPTIPAPSAYSNEAVLGNWDDEDQSEEEEPQLKK
PSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKEMDEMDAVQRKIRQQ
QIVEEADFENTKDLFMVGNASEGMEPPAEPTLDNFKPETDADYSKFAKMI
GERCAELNINPRRTGRYMDFVKEVLRVVVRGLGPDDTKDLSTFVGVLSNE
KREEFKKSKGFKKKTNKKSNVRVDKMTDMRNDVYDDFADDFM*

mRNA from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+ (Gracilaria caudata M_176_S67 male)
ATGTCTGGATGGGATGATGATGAGTGGGATGCAGATCCAGCCCCCACGGC
ACCCACAATACCTGCTCCATCTGCGTACAGTAATGAAGCAGTGCTGGGTA
ACTGGGATGATGAGGACCAATCCGAGGAAGAGGAACCGCAACTGAAGAAG
CCGTCAGCCCCCATGAAACCCTCCAAGCTTCGCGCGAAGGCTCTCAAGGA
GAAGGAAGAACAGGAACGACAGCGAGAGATAGAGAAAATCATGGCGCGTC
AAAAAGAGATGGATGAAATGGATGCAGTACAACGAAAGATTCGTCAGCAA
CAGATCGTCGAAGAAGCGGACTTCGAAAACACAAAGGACCTCTTTATGGT
TGGCAACGCTTCAGAAGGAATGGAGCCACCTGCCGAACCCACATTAGACA
ATTTTAAACCAGAAACGGATGCAGACTACTCCAAATTCGCGAAGATGATT
GGTGAGCGATGCGCAGAGCTCAACATCAACCCGAGAAGGACGGGACGCTA
CATGGACTTTGTCAAAGAGGTGCTCCGAGTAGTTGTTCGAGGACTCGGAC
CAGACGACACAAAAGATCTTTCAACGTTTGTTGGAGTCTTAAGTAACGAA
AAGAGAGAGGAGTTCAAAAAGTCTAAAGGATTCAAGAAGAAGACAAACAA
GAAGTCGAACGTGAGAGTAGACAAGATGACTGACATGCGTAATGACGTTT
ACGATGACTTTGCCGACGACTTTATGTAA

Coding sequence (CDS) from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+

>Gcaud7870.t1 ID=Gcaud7870.t1|Name=Gcaud7870.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:6345..7073+ (Gracilaria caudata M_176_S67 male)
ATGTCTGGATGGGATGATGATGAGTGGGATGCAGATCCAGCCCCCACGGC
ACCCACAATACCTGCTCCATCTGCGTACAGTAATGAAGCAGTGCTGGGTA
ACTGGGATGATGAGGACCAATCCGAGGAAGAGGAACCGCAACTGAAGAAG
CCGTCAGCCCCCATGAAACCCTCCAAGCTTCGCGCGAAGGCTCTCAAGGA
GAAGGAAGAACAGGAACGACAGCGAGAGATAGAGAAAATCATGGCGCGTC
AAAAAGAGATGGATGAAATGGATGCAGTACAACGAAAGATTCGTCAGCAA
CAGATCGTCGAAGAAGCGGACTTCGAAAACACAAAGGACCTCTTTATGGT
TGGCAACGCTTCAGAAGGAATGGAGCCACCTGCCGAACCCACATTAGACA
ATTTTAAACCAGAAACGGATGCAGACTACTCCAAATTCGCGAAGATGATT
GGTGAGCGATGCGCAGAGCTCAACATCAACCCGAGAAGGACGGGACGCTA
CATGGACTTTGTCAAAGAGGTGCTCCGAGTAGTTGTTCGAGGACTCGGAC
CAGACGACACAAAAGATCTTTCAACGTTTGTTGGAGTCTTAAGTAACGAA
AAGAGAGAGGAGTTCAAAAAGTCTAAAGGATTCAAGAAGAAGACAAACAA
GAAGTCGAACGTGAGAGTAGACAAGATGACTGACATGCGTAATGACGTTT
ACGATGACTTTGCCGACGACTTTATGTAA