Gcaud7757.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7757.t1
Unique NameGcaud7757.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length572
Homology
BLAST of Gcaud7757.t1 vs. uniprot
Match: A0A1X6P654_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P654_PORUM)

HSP 1 Score: 453 bits (1166), Expect = 9.330e-151
Identity = 244/545 (44.77%), Postives = 337/545 (61.83%), Query Frame = 0
Query:   12 TRGLPSPYLVFGEALQSIALGILERGDTNASFSTRAVGLTILALLLILGSLMASFASSLSETLVGSALTVPVVRADLVFTMISRIVLVSLWSGKLRPTKLLYANEVYPLQAAAIIWNDCRPIKAIRRNEDGHSTIIDILSSQLQLWKPTRLDSILSRVSKLLVYVILCLLQRLFLAVEVVLFILLRLFVYRNVTNYTLAPVQGRRICAVGHVALITDDQLTFIQEFTMRGDVSTEHKLEARRVLLRSVHVANLFSQGGYNRLPEHACGDHAMSEYFQLVQDNSLIKDSLSRVMD-INVLPHLQGGNKLKRGAAVPRQIMWARIVAASKLGLQGRNRWRGPIVTALFTVAHKNHALWEPYVNQTPLHRHVYTVSRRWFIDWIMFLWWEVQIPNELVHDPVTFFTRVRSVMEENLVHNTISLPYAIGEMAVSFPRGREVQVMLSRLLGDDWEEWFQNQQTLAGKPLSETMRDSLMWKCYQQPVTSDVTVDPTLYDEKQLSSVIEGSPSAASQDQVITIIAKRIMDVVIERVRQKWLKLPNHLLDPIE 555
            TRGLP+ +LV GEA+QSI+LGI+ERGD N SF TR+VG  ++ L + LG+++A   S LSE L+ SALTVP+VRADL+  ++SR V + +W+GKL P KL +A+EVYPLQ AAIIWNDC P  A  R ED H+ + D+L  Q  LW+P+ LDS ++RV K  ++VIL  L  +   +E +L    RL    +  + T  PV GR+   VGH  L+TD QLT+IQ+ TMR     +   E R VL+R++H ANL   GGY RL EHA   HAMSE++Q + +  L     +  MD + VL     GN ++     PRQ++WAR+V  S        RWRGP  +AL  +A ++H  W   VN+T +HRHVY+V+RRW +DW MFLWW++   +E  H    F +R+R +++ +L HNT SLP+A+GE+A S PR  +V+ MLS  LG DW  W     T +G P+ +    S  WKC  Q V + V VD  LY  + +S V+     A   DQV  ++A R++D + +R    W +LP+ LLDP E
Sbjct:    3 TRGLPAAFLVVGEAIQSISLGIMERGDPNTSFFTRSVGTMMIVLGVALGTVIACLGSPLSEGLIFSALTVPIVRADLIARLLSRFVHIFIWTGKLHPAKLNFASEVYPLQVAAIIWNDCAPASAHSRGEDEHAVVWDMLDEQRSLWRPSVLDSWVARVIKAPLFVILYGLVIVVEMIEAMLVAGWRLSWGGSARHITQVPVMGRQRAIVGHATLVTDPQLTWIQD-TMRRQADPDTNREMRPVLVRALHAANLLGHGGYTRLHEHAPHGHAMSEFYQRLTNAGLKAALTTSSMDALGVLGWCPNGNSIELAKPAPRQVLWARLVVGSDPAPGFCGRWRGPAASALLVLAQEHHEQWGASVNRTAIHRHVYSVTRRWLVDWTMFLWWDLGTSDEAAHMASFFSSRMRGLLQASLAHNTWSLPHAVGELAWSTPRPSDVEAMLSATLGVDWHSWLAGAVTASGVPMGDAAAQSGEWKCVGQEVDATVAVDQALYAPRVMSEVLSTGGGAPVGDQVRAVLAGRVVDTLTQRANAAWQQLPHQLLDPPE 546          
BLAST of Gcaud7757.t1 vs. uniprot
Match: A0A1X6P5J3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5J3_PORUM)

HSP 1 Score: 438 bits (1127), Expect = 6.530e-145
Identity = 234/535 (43.74%), Postives = 338/535 (63.18%), Query Frame = 0
Query:   23 GEALQSIALGILERGDTNASFSTRAVGLTILALLLILGSLMASFASSLSETLVGSALTVPVVRADLVFTMISRIVLVSLWSGKLRPTKLLYANEVYPLQAAAIIWNDCRPIKAIRRNEDGHSTIIDILSSQLQLWKPTRLDSILSRVSKLLVYVILCLLQRLFLAVEVVLFILLRLFVYRNVTNYTLAPVQGRRICAVGHVALITDDQLTFIQEFTMRGDVSTEHKLEARRVLLRSVHVANLFSQGGYNRLPEHACGDHAMSEYFQLVQDNSLIKDSL--SRVMDINVLPHLQGGNKLKRGAAVPRQIMWARIVAASKLGLQGRNRWRGPIVTALFTVAHKNHALWEPYVNQTPLHRHVYTVSRRWFIDWIMFLWWEVQIPNELVHDPVTFFTRVRSVMEENLVHNTISLPYAIGEMAVSFPRGREVQVMLSRLLGDDWEEWFQNQQTLAGKPLSETMRDSLMWKCYQQPVTSDVTVDPTLYDEKQLSSVIEGSPSAASQDQVITIIAKRIMDVVIERVRQKWLKLPNHLLDPIE 555
            G A+QS+ALGI+ERGD N SF TR+VG   + LLL+ G+++A+  +  +   + +AL VP VR DLV  ++S I+ +  W+G+LRP  +LY ++VYPLQ AA+IWN+C P++   R EDG + ++D+L  Q  LW+ T +DS+  R  K+ VYV +C+L     A+E VLF   R  V R   N TL  VQG+R   +GH ALI D QL++++E TMRG  +   ++ ARRVL+R+VHVANL    G+ RL EH+   HAMSEYFQ V  NS +K +L  S++ ++ VL  L  GN L  G  +P+Q+MWAR+VA   L L G  RWRGP+ +A+  VA +N   W   V++T +HRHVY+V RRW +DW+M++WW++ IP+  V D   FF R+R+++  +LV+NT SLP+A+GE+ VS P+  +V  +L+  LG  WE W     T +G PL   M  S  W C  + V  DV VD  LY    L  V++   +A   +Q   ++A R++D ++ RV+  W   P HL+D +E
Sbjct:   12 GGAIQSVALGIVERGDANTSFVTRSVGTVTVTLLLVAGTIIAAAGAPSAPVALVAALAVPTVRGDLVLLLLSSILHMVFWAGQLRPNGVLYPSDVYPLQVAAMIWNNCTPVRPPNRGEDGGTLLVDMLRDQRLLWRATSVDSLFVRSLKVPVYVGICILCAAAEALEAVLFWGWRTVVDRTAGNVTLVDVQGQRQLVLGHTALIADAQLSWLREATMRGGNAAADRV-ARRVLVRAVHVANLLVHSGHTRLHEHSPHGHAMSEYFQRVA-NSTLKQALATSQIDELRVLQALPNGNSLTCGQLIPKQVMWARLVAGCSLSLDGSLRWRGPVASAVLVVAQENVEQWAANVSRTAIHRHVYSVMRRWLVDWVMYIWWDLDIPDGAVDDGAAFFGRLRALLLGSLVNNTQSLPHAVGELLVSAPKTDDVVTILAGTLGGGWELWASTAVTASGVPLEAAMEGSGEWLCAGRVVGEDVAVDHRLYVPAPLERVLQTPATAPEGEQARAVLANRMIDTLVARVQAAWEAQPVHLVDALE 544          
The following BLAST results are available for this feature:
BLAST of Gcaud7757.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1X6P654_PORUM9.330e-15144.77Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P5J3_PORUM6.530e-14543.74Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..16
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 103..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 17..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 197..571
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..78
NoneNo IPR availableTMHMMTMhelixcoord: 47..66
NoneNo IPR availableTMHMMTMhelixcoord: 15..34
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 81..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_228_length_35511_cov_4.360474contigNODE_228_length_35511_cov_4.360474:11823..13538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7757.t1Gcaud7757.t1Gracilaria caudata M_176_S67 malemRNANODE_228_length_35511_cov_4.360474 11823..13538 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=572bp
MSSYFHREDDRTRGLPSPYLVFGEALQSIALGILERGDTNASFSTRAVGL
TILALLLILGSLMASFASSLSETLVGSALTVPVVRADLVFTMISRIVLVS
LWSGKLRPTKLLYANEVYPLQAAAIIWNDCRPIKAIRRNEDGHSTIIDIL
SSQLQLWKPTRLDSILSRVSKLLVYVILCLLQRLFLAVEVVLFILLRLFV
YRNVTNYTLAPVQGRRICAVGHVALITDDQLTFIQEFTMRGDVSTEHKLE
ARRVLLRSVHVANLFSQGGYNRLPEHACGDHAMSEYFQLVQDNSLIKDSL
SRVMDINVLPHLQGGNKLKRGAAVPRQIMWARIVAASKLGLQGRNRWRGP
IVTALFTVAHKNHALWEPYVNQTPLHRHVYTVSRRWFIDWIMFLWWEVQI
PNELVHDPVTFFTRVRSVMEENLVHNTISLPYAIGEMAVSFPRGREVQVM
LSRLLGDDWEEWFQNQQTLAGKPLSETMRDSLMWKCYQQPVTSDVTVDPT
LYDEKQLSSVIEGSPSAASQDQVITIIAKRIMDVVIERVRQKWLKLPNHL
LDPIEEKLKVQHSRSDDVEKV*
back to top