Gcaud7757.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7757.t1
Unique Name	Gcaud7757.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_228_length_35511_cov_4.360474	contig	NODE_228_length_35511_cov_4.360474:11823..13538 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7757	Gcaud7757	Gracilaria caudata M_176_S67 male	gene	NODE_228_length_35511_cov_4.360474 11823..13538 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7757.t1.start1	Gcaud7757.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_228_length_35511_cov_4.360474 11823..11825 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7757.t1.CDS1	Gcaud7757.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_228_length_35511_cov_4.360474 11823..13538 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7757.t1.exon1	Gcaud7757.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_228_length_35511_cov_4.360474 11823..13538 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7757.t1.stop1	Gcaud7757.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_228_length_35511_cov_4.360474 13536..13538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7757.t1	Gcaud7757.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_228_length_35511_cov_4.360474 11823..13538 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+
coding sequence from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+

mRNA sequence

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=572bp
MSSYFHREDDRTRGLPSPYLVFGEALQSIALGILERGDTNASFSTRAVGL
TILALLLILGSLMASFASSLSETLVGSALTVPVVRADLVFTMISRIVLVS
LWSGKLRPTKLLYANEVYPLQAAAIIWNDCRPIKAIRRNEDGHSTIIDIL
SSQLQLWKPTRLDSILSRVSKLLVYVILCLLQRLFLAVEVVLFILLRLFV
YRNVTNYTLAPVQGRRICAVGHVALITDDQLTFIQEFTMRGDVSTEHKLE
ARRVLLRSVHVANLFSQGGYNRLPEHACGDHAMSEYFQLVQDNSLIKDSL
SRVMDINVLPHLQGGNKLKRGAAVPRQIMWARIVAASKLGLQGRNRWRGP
IVTALFTVAHKNHALWEPYVNQTPLHRHVYTVSRRWFIDWIMFLWWEVQI
PNELVHDPVTFFTRVRSVMEENLVHNTISLPYAIGEMAVSFPRGREVQVM
LSRLLGDDWEEWFQNQQTLAGKPLSETMRDSLMWKCYQQPVTSDVTVDPT
LYDEKQLSSVIEGSPSAASQDQVITIIAKRIMDVVIERVRQKWLKLPNHL
LDPIEEKLKVQHSRSDDVEKV*

spliced messenger RNA

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCTATTTCCACCGTGAAGACGATCGCACCCGCGGTCTTCCTTC
CCCCTATCTCGTCTTTGGCGAGGCTTTACAGTCCATCGCCCTAGGAATCC
TAGAACGCGGGGACACAAATGCCAGCTTCTCCACCCGTGCTGTCGGTCTA
ACCATCCTCGCTCTTCTACTCATTCTCGGTTCTCTCATGGCCTCCTTCGC
CTCTTCGTTATCCGAGACGCTCGTCGGGTCTGCTCTTACTGTCCCGGTTG
TCCGCGCGGATCTCGTGTTCACCATGATCTCACGTATAGTCCTCGTCTCC
CTCTGGTCCGGTAAACTCCGCCCAACAAAGCTCCTCTACGCAAATGAAGT
TTACCCTCTGCAAGCGGCGGCCATTATTTGGAATGACTGTAGACCCATAA
AAGCAATCCGACGCAATGAAGACGGTCATTCCACTATCATAGATATTCTT
TCCTCTCAGCTTCAACTGTGGAAGCCAACAAGACTCGATTCCATTCTGTC
TCGCGTTTCCAAGTTACTCGTGTACGTAATTTTGTGTCTGCTTCAGCGCC
TCTTTCTCGCCGTCGAAGTCGTTCTTTTTATCCTCCTTCGTCTCTTTGTT
TACAGAAATGTTACCAATTATACTCTCGCACCGGTACAGGGACGTCGAAT
TTGCGCAGTTGGCCATGTTGCTCTCATAACCGACGACCAGCTTACCTTCA
TTCAAGAGTTCACAATGCGTGGTGATGTGTCCACGGAACACAAGCTGGAG
GCCAGACGAGTGTTGCTTCGTTCCGTTCATGTGGCCAACCTGTTTTCTCA
AGGCGGATATAACCGTCTACCAGAGCATGCATGCGGAGATCATGCGATGA
GCGAATACTTCCAACTCGTCCAAGACAACTCCCTTATCAAAGACTCCCTC
TCAAGAGTCATGGACATCAATGTTCTCCCACATCTGCAGGGTGGGAACAA
GCTCAAACGCGGTGCTGCAGTTCCACGCCAGATCATGTGGGCACGCATTG
TGGCCGCAAGTAAGCTCGGGTTGCAAGGACGTAATCGCTGGCGAGGCCCT
ATAGTCACAGCCTTGTTCACCGTGGCGCACAAGAACCACGCCCTGTGGGA
ACCATACGTGAATCAAACGCCGTTACACAGGCATGTTTATACTGTTTCCA
GACGATGGTTCATCGACTGGATTATGTTTCTGTGGTGGGAGGTACAAATC
CCGAATGAGCTTGTCCACGACCCTGTCACGTTTTTCACCCGTGTACGCTC
AGTCATGGAGGAAAACCTTGTTCATAACACAATCTCGTTACCGTATGCAA
TTGGTGAGATGGCCGTGAGCTTTCCGCGAGGTCGGGAAGTGCAAGTAATG
CTTTCGAGGTTATTGGGTGACGATTGGGAAGAGTGGTTTCAGAATCAGCA
AACGTTAGCGGGAAAACCTCTCAGCGAGACCATGAGAGATTCGCTCATGT
GGAAATGCTATCAACAACCAGTAACTAGTGATGTGACCGTGGATCCAACG
CTGTATGATGAAAAGCAGCTAAGTTCTGTGATTGAAGGGTCACCTTCAGC
TGCATCGCAAGACCAGGTTATTACAATCATTGCAAAGCGCATCATGGATG
TTGTGATTGAGCGCGTCAGACAGAAGTGGCTCAAACTACCAAATCATTTG
TTGGATCCTATAGAAGAAAAATTGAAAGTGCAGCACAGCAGGTCAGATGA
TGTTGAGAAGGTTTGA

protein sequence of Gcaud7757.t1

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=572bp
MSSYFHREDDRTRGLPSPYLVFGEALQSIALGILERGDTNASFSTRAVGL
TILALLLILGSLMASFASSLSETLVGSALTVPVVRADLVFTMISRIVLVS
LWSGKLRPTKLLYANEVYPLQAAAIIWNDCRPIKAIRRNEDGHSTIIDIL
SSQLQLWKPTRLDSILSRVSKLLVYVILCLLQRLFLAVEVVLFILLRLFV
YRNVTNYTLAPVQGRRICAVGHVALITDDQLTFIQEFTMRGDVSTEHKLE
ARRVLLRSVHVANLFSQGGYNRLPEHACGDHAMSEYFQLVQDNSLIKDSL
SRVMDINVLPHLQGGNKLKRGAAVPRQIMWARIVAASKLGLQGRNRWRGP
IVTALFTVAHKNHALWEPYVNQTPLHRHVYTVSRRWFIDWIMFLWWEVQI
PNELVHDPVTFFTRVRSVMEENLVHNTISLPYAIGEMAVSFPRGREVQVM
LSRLLGDDWEEWFQNQQTLAGKPLSETMRDSLMWKCYQQPVTSDVTVDPT
LYDEKQLSSVIEGSPSAASQDQVITIIAKRIMDVVIERVRQKWLKLPNHL
LDPIEEKLKVQHSRSDDVEKV*

mRNA from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCCTATTTCCACCGTGAAGACGATCGCACCCGCGGTCTTCCTTC
CCCCTATCTCGTCTTTGGCGAGGCTTTACAGTCCATCGCCCTAGGAATCC
TAGAACGCGGGGACACAAATGCCAGCTTCTCCACCCGTGCTGTCGGTCTA
ACCATCCTCGCTCTTCTACTCATTCTCGGTTCTCTCATGGCCTCCTTCGC
CTCTTCGTTATCCGAGACGCTCGTCGGGTCTGCTCTTACTGTCCCGGTTG
TCCGCGCGGATCTCGTGTTCACCATGATCTCACGTATAGTCCTCGTCTCC
CTCTGGTCCGGTAAACTCCGCCCAACAAAGCTCCTCTACGCAAATGAAGT
TTACCCTCTGCAAGCGGCGGCCATTATTTGGAATGACTGTAGACCCATAA
AAGCAATCCGACGCAATGAAGACGGTCATTCCACTATCATAGATATTCTT
TCCTCTCAGCTTCAACTGTGGAAGCCAACAAGACTCGATTCCATTCTGTC
TCGCGTTTCCAAGTTACTCGTGTACGTAATTTTGTGTCTGCTTCAGCGCC
TCTTTCTCGCCGTCGAAGTCGTTCTTTTTATCCTCCTTCGTCTCTTTGTT
TACAGAAATGTTACCAATTATACTCTCGCACCGGTACAGGGACGTCGAAT
TTGCGCAGTTGGCCATGTTGCTCTCATAACCGACGACCAGCTTACCTTCA
TTCAAGAGTTCACAATGCGTGGTGATGTGTCCACGGAACACAAGCTGGAG
GCCAGACGAGTGTTGCTTCGTTCCGTTCATGTGGCCAACCTGTTTTCTCA
AGGCGGATATAACCGTCTACCAGAGCATGCATGCGGAGATCATGCGATGA
GCGAATACTTCCAACTCGTCCAAGACAACTCCCTTATCAAAGACTCCCTC
TCAAGAGTCATGGACATCAATGTTCTCCCACATCTGCAGGGTGGGAACAA
GCTCAAACGCGGTGCTGCAGTTCCACGCCAGATCATGTGGGCACGCATTG
TGGCCGCAAGTAAGCTCGGGTTGCAAGGACGTAATCGCTGGCGAGGCCCT
ATAGTCACAGCCTTGTTCACCGTGGCGCACAAGAACCACGCCCTGTGGGA
ACCATACGTGAATCAAACGCCGTTACACAGGCATGTTTATACTGTTTCCA
GACGATGGTTCATCGACTGGATTATGTTTCTGTGGTGGGAGGTACAAATC
CCGAATGAGCTTGTCCACGACCCTGTCACGTTTTTCACCCGTGTACGCTC
AGTCATGGAGGAAAACCTTGTTCATAACACAATCTCGTTACCGTATGCAA
TTGGTGAGATGGCCGTGAGCTTTCCGCGAGGTCGGGAAGTGCAAGTAATG
CTTTCGAGGTTATTGGGTGACGATTGGGAAGAGTGGTTTCAGAATCAGCA
AACGTTAGCGGGAAAACCTCTCAGCGAGACCATGAGAGATTCGCTCATGT
GGAAATGCTATCAACAACCAGTAACTAGTGATGTGACCGTGGATCCAACG
CTGTATGATGAAAAGCAGCTAAGTTCTGTGATTGAAGGGTCACCTTCAGC
TGCATCGCAAGACCAGGTTATTACAATCATTGCAAAGCGCATCATGGATG
TTGTGATTGAGCGCGTCAGACAGAAGTGGCTCAAACTACCAAATCATTTG
TTGGATCCTATAGAAGAAAAATTGAAAGTGCAGCACAGCAGGTCAGATGA
TGTTGAGAAGGTTTGA

Coding sequence (CDS) from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+

>Gcaud7757.t1 ID=Gcaud7757.t1|Name=Gcaud7757.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1716bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:11823..13538+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCCTATTTCCACCGTGAAGACGATCGCACCCGCGGTCTTCCTTC
CCCCTATCTCGTCTTTGGCGAGGCTTTACAGTCCATCGCCCTAGGAATCC
TAGAACGCGGGGACACAAATGCCAGCTTCTCCACCCGTGCTGTCGGTCTA
ACCATCCTCGCTCTTCTACTCATTCTCGGTTCTCTCATGGCCTCCTTCGC
CTCTTCGTTATCCGAGACGCTCGTCGGGTCTGCTCTTACTGTCCCGGTTG
TCCGCGCGGATCTCGTGTTCACCATGATCTCACGTATAGTCCTCGTCTCC
CTCTGGTCCGGTAAACTCCGCCCAACAAAGCTCCTCTACGCAAATGAAGT
TTACCCTCTGCAAGCGGCGGCCATTATTTGGAATGACTGTAGACCCATAA
AAGCAATCCGACGCAATGAAGACGGTCATTCCACTATCATAGATATTCTT
TCCTCTCAGCTTCAACTGTGGAAGCCAACAAGACTCGATTCCATTCTGTC
TCGCGTTTCCAAGTTACTCGTGTACGTAATTTTGTGTCTGCTTCAGCGCC
TCTTTCTCGCCGTCGAAGTCGTTCTTTTTATCCTCCTTCGTCTCTTTGTT
TACAGAAATGTTACCAATTATACTCTCGCACCGGTACAGGGACGTCGAAT
TTGCGCAGTTGGCCATGTTGCTCTCATAACCGACGACCAGCTTACCTTCA
TTCAAGAGTTCACAATGCGTGGTGATGTGTCCACGGAACACAAGCTGGAG
GCCAGACGAGTGTTGCTTCGTTCCGTTCATGTGGCCAACCTGTTTTCTCA
AGGCGGATATAACCGTCTACCAGAGCATGCATGCGGAGATCATGCGATGA
GCGAATACTTCCAACTCGTCCAAGACAACTCCCTTATCAAAGACTCCCTC
TCAAGAGTCATGGACATCAATGTTCTCCCACATCTGCAGGGTGGGAACAA
GCTCAAACGCGGTGCTGCAGTTCCACGCCAGATCATGTGGGCACGCATTG
TGGCCGCAAGTAAGCTCGGGTTGCAAGGACGTAATCGCTGGCGAGGCCCT
ATAGTCACAGCCTTGTTCACCGTGGCGCACAAGAACCACGCCCTGTGGGA
ACCATACGTGAATCAAACGCCGTTACACAGGCATGTTTATACTGTTTCCA
GACGATGGTTCATCGACTGGATTATGTTTCTGTGGTGGGAGGTACAAATC
CCGAATGAGCTTGTCCACGACCCTGTCACGTTTTTCACCCGTGTACGCTC
AGTCATGGAGGAAAACCTTGTTCATAACACAATCTCGTTACCGTATGCAA
TTGGTGAGATGGCCGTGAGCTTTCCGCGAGGTCGGGAAGTGCAAGTAATG
CTTTCGAGGTTATTGGGTGACGATTGGGAAGAGTGGTTTCAGAATCAGCA
AACGTTAGCGGGAAAACCTCTCAGCGAGACCATGAGAGATTCGCTCATGT
GGAAATGCTATCAACAACCAGTAACTAGTGATGTGACCGTGGATCCAACG
CTGTATGATGAAAAGCAGCTAAGTTCTGTGATTGAAGGGTCACCTTCAGC
TGCATCGCAAGACCAGGTTATTACAATCATTGCAAAGCGCATCATGGATG
TTGTGATTGAGCGCGTCAGACAGAAGTGGCTCAAACTACCAAATCATTTG
TTGGATCCTATAGAAGAAAAATTGAAAGTGCAGCACAGCAGGTCAGATGA
TGTTGAGAAGGTTTGA