Gcaud7612.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7612.t1
Unique Name	Gcaud7612.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	470

Homology

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BLAST of Gcaud7612.t1 vs. uniprot
Match: A0A2V3J6H1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H1_9FLOR)

HSP 1 Score: 513 bits (1322), Expect = 5.130e-177
Identity = 258/433 (59.58%), Postives = 330/433 (76.21%), Query Frame = 0

Query:   34 ELEDGHTIFALSMGFTSVKLGFSIDVINAAKFLLSKNVGLPLSNWVYTQGAVIDSSNSLFLITLNVIVPTEGAAEKEASATDFITSGKLDEEFANLGLADLSFTIMNPEAADNDISPSQVPQSNLKELVDAWPTIAEGEESSRMIDLYVQSPTIFFPPKLKEAILWFVGNETDTLTEPTSWFMPELAVLNSTRGEYIASLIHIGGQNETEAVVIKSTEYVARGGLSQALLESRARDVNITMLPKVTLVGAENEAPKSRDEVAVDLLFRLSAPISGITKEVVDIMKKRCAAVTNTRQSAWWVGVIEAEVEGNDNGPFKLDLRAMVSKTQTLETVRLVADVVRSRKLDHELWASGRTDMLVRLRPRMTKFKSNGSGGNAIRSTAATVAASIAGMLLIVVISAAILCLLPREGNFGPVRSFLGQTEKSGKPWPFGR 466
            +++ G++ FALS+ F S  LGF+ +V+   K +LS+N+G+PL +WVY+ G V+D++ SLF +TL+VIVP E     E+    FI+SG+LDEEFA +GL+ + FT+ + E  +      +VP+S+L ELVDA P + EGEE SR++DLYV SPTI+F P LKEAI WF GNET+TLT+P+SW++PEL VLNSTRG+YIA+L+H+G   E + V+ +S  YVA GGL+QALLES ARDVNIT+LP+V L   E +     D ++VD+LFR+SAPISGIT EVV+IMK RCA +T T+Q+AW +  +  EVE N NGPF  DL  +V KTQ +ETVRLVA +VRSR LDH LW  G TD+ VRLRPR+T FKSNGSGGNAI+STAATVAASIAGML++V I A ILCLLPREGNFGPVRSFL + +KSGK WPF R
Sbjct:   46 DIQTGYSAFALSISFISSLLGFAPEVVQGMKAILSQNLGIPLEHWVYSSGRVVDATTSLFAVTLDVIVPMEEIKHGESLTRKFISSGQLDEEFATIGLSGMMFTLTDQEIVEEGTPTPKVPKSDLSELVDALPPLHEGEELSRLLDLYVVSPTIYFTPVLKEAIRWFAGNETNTLTDPSSWYLPELTVLNSTRGQYIATLVHVGNIGEADMVLNQSAAYVAHGGLTQALLESGARDVNITLLPRVKLAKPEEDPSIDSDLISVDILFRMSAPISGITNEVVEIMKARCADITETQQAAWRLKYVAPEVEENVNGPFITDLGVIVPKTQKVETVRLVAGLVRSRALDHGLWEGGHTDVRVRLRPRLTPFKSNGSGGNAIQSTAATVAASIAGMLIVVCIGAGILCLLPREGNFGPVRSFLAEVDKSGKVWPFRR 478

The following BLAST results are available for this feature:

BLAST of Gcaud7612.t1 vs. uniprot

BLAST of Gcaud7612.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J6H1_9FLOR	5.130e-177	59.58	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 418..439
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..417
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 440..469
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	TMHMM	TMhelix		coord: 417..439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1157_length_13190_cov_4.178105	contig	NODE_1157_length_13190_cov_4.178105:6521..7930 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1	Gcaud7612.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1157_length_13190_cov_4.178105 6521..7930 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=470bp
MFRSFVIGSFVILIASSSAQAQNSEAPPPDPPPELEDGHTIFALSMGFTS
VKLGFSIDVINAAKFLLSKNVGLPLSNWVYTQGAVIDSSNSLFLITLNVI
VPTEGAAEKEASATDFITSGKLDEEFANLGLADLSFTIMNPEAADNDISP
SQVPQSNLKELVDAWPTIAEGEESSRMIDLYVQSPTIFFPPKLKEAILWF
VGNETDTLTEPTSWFMPELAVLNSTRGEYIASLIHIGGQNETEAVVIKST
EYVARGGLSQALLESRARDVNITMLPKVTLVGAENEAPKSRDEVAVDLLF
RLSAPISGITKEVVDIMKKRCAAVTNTRQSAWWVGVIEAEVEGNDNGPFK
LDLRAMVSKTQTLETVRLVADVVRSRKLDHELWASGRTDMLVRLRPRMTK
FKSNGSGGNAIRSTAATVAASIAGMLLIVVISAAILCLLPREGNFGPVRS
FLGQTEKSGKPWPFGRGAA*