Gcaud7612.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7612.t1
Unique Name	Gcaud7612.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	470

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1157_length_13190_cov_4.178105	contig	NODE_1157_length_13190_cov_4.178105:6521..7930 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7612	Gcaud7612	Gracilaria caudata M_176_S67 male	gene	NODE_1157_length_13190_cov_4.178105 6521..7930 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1.stop1	Gcaud7612.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1157_length_13190_cov_4.178105 6521..6523 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1.CDS1	Gcaud7612.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1157_length_13190_cov_4.178105 6521..7930 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1.exon1	Gcaud7612.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1157_length_13190_cov_4.178105 6521..7930 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1.start1	Gcaud7612.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1157_length_13190_cov_4.178105 7928..7930 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7612.t1	Gcaud7612.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1157_length_13190_cov_4.178105 6521..7930 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930-
coding sequence from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930-

mRNA sequence

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=470bp
MFRSFVIGSFVILIASSSAQAQNSEAPPPDPPPELEDGHTIFALSMGFTS
VKLGFSIDVINAAKFLLSKNVGLPLSNWVYTQGAVIDSSNSLFLITLNVI
VPTEGAAEKEASATDFITSGKLDEEFANLGLADLSFTIMNPEAADNDISP
SQVPQSNLKELVDAWPTIAEGEESSRMIDLYVQSPTIFFPPKLKEAILWF
VGNETDTLTEPTSWFMPELAVLNSTRGEYIASLIHIGGQNETEAVVIKST
EYVARGGLSQALLESRARDVNITMLPKVTLVGAENEAPKSRDEVAVDLLF
RLSAPISGITKEVVDIMKKRCAAVTNTRQSAWWVGVIEAEVEGNDNGPFK
LDLRAMVSKTQTLETVRLVADVVRSRKLDHELWASGRTDMLVRLRPRMTK
FKSNGSGGNAIRSTAATVAASIAGMLLIVVISAAILCLLPREGNFGPVRS
FLGQTEKSGKPWPFGRGAA*

spliced messenger RNA

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGTTCTTTCGTGATAGGCAGCTTCGTCATTCTCATTGCTTCAAG
CAGTGCACAAGCTCAGAACTCCGAGGCGCCGCCACCTGACCCGCCACCTG
AGCTTGAGGATGGGCACACAATCTTTGCTTTGTCAATGGGTTTCACGTCT
GTCAAGCTGGGATTTTCCATTGATGTTATAAACGCGGCAAAGTTTCTTCT
ATCAAAAAACGTTGGACTACCTTTGAGCAATTGGGTGTATACACAAGGTG
CTGTGATTGATAGTTCAAATTCTTTGTTCTTAATCACGTTGAATGTGATT
GTTCCAACCGAAGGTGCTGCGGAAAAGGAAGCGTCTGCAACCGATTTCAT
CACGAGTGGAAAACTTGATGAGGAATTCGCCAATTTGGGATTGGCAGACC
TGTCGTTCACAATAATGAACCCAGAAGCGGCTGACAACGACATTAGTCCT
TCGCAAGTACCGCAGTCCAATCTTAAGGAGCTTGTAGACGCATGGCCCAC
TATCGCAGAGGGGGAGGAATCGTCGCGTATGATAGATCTGTACGTGCAAT
CTCCTACCATATTCTTTCCTCCCAAACTCAAAGAGGCTATTCTGTGGTTT
GTTGGGAACGAGACAGACACGTTAACTGAGCCAACAAGTTGGTTCATGCC
CGAACTCGCAGTGCTCAACTCAACGCGCGGCGAATACATCGCAAGTCTAA
TTCACATTGGAGGCCAAAACGAGACAGAAGCTGTGGTGATAAAAAGCACG
GAGTACGTGGCTCGTGGAGGACTTTCGCAAGCACTACTCGAAAGCCGGGC
GCGCGATGTGAACATCACCATGCTTCCCAAGGTGACGCTCGTGGGTGCGG
AAAACGAGGCGCCTAAATCGCGAGATGAAGTTGCAGTCGATTTGCTGTTT
AGATTGTCCGCACCTATTAGCGGAATTACAAAGGAAGTGGTGGATATTAT
GAAGAAACGGTGCGCAGCTGTTACAAACACGCGCCAAAGCGCGTGGTGGG
TGGGTGTAATCGAAGCAGAGGTTGAGGGAAACGACAATGGACCGTTCAAA
CTTGACTTGCGAGCGATGGTGTCCAAAACGCAAACACTGGAGACAGTTCG
ACTGGTGGCGGATGTGGTTCGGTCAAGGAAACTAGATCACGAGTTGTGGG
CATCTGGACGGACCGACATGCTGGTGCGGCTGAGACCAAGGATGACAAAG
TTCAAGTCGAACGGAAGTGGAGGTAACGCCATCCGGTCCACAGCAGCGAC
GGTAGCGGCTAGTATAGCGGGAATGCTGCTCATCGTGGTGATAAGCGCGG
CCATACTGTGCTTGCTGCCGAGGGAGGGCAACTTTGGGCCGGTGCGCAGT
TTCCTCGGACAGACTGAGAAGAGTGGGAAGCCGTGGCCGTTTGGAAGAGG
AGCGGCATAG

protein sequence of Gcaud7612.t1

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=470bp
MFRSFVIGSFVILIASSSAQAQNSEAPPPDPPPELEDGHTIFALSMGFTS
VKLGFSIDVINAAKFLLSKNVGLPLSNWVYTQGAVIDSSNSLFLITLNVI
VPTEGAAEKEASATDFITSGKLDEEFANLGLADLSFTIMNPEAADNDISP
SQVPQSNLKELVDAWPTIAEGEESSRMIDLYVQSPTIFFPPKLKEAILWF
VGNETDTLTEPTSWFMPELAVLNSTRGEYIASLIHIGGQNETEAVVIKST
EYVARGGLSQALLESRARDVNITMLPKVTLVGAENEAPKSRDEVAVDLLF
RLSAPISGITKEVVDIMKKRCAAVTNTRQSAWWVGVIEAEVEGNDNGPFK
LDLRAMVSKTQTLETVRLVADVVRSRKLDHELWASGRTDMLVRLRPRMTK
FKSNGSGGNAIRSTAATVAASIAGMLLIVVISAAILCLLPREGNFGPVRS
FLGQTEKSGKPWPFGRGAA*

mRNA from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930- (Gracilaria caudata M_176_S67 male)
ATGTTTCGTTCTTTCGTGATAGGCAGCTTCGTCATTCTCATTGCTTCAAG
CAGTGCACAAGCTCAGAACTCCGAGGCGCCGCCACCTGACCCGCCACCTG
AGCTTGAGGATGGGCACACAATCTTTGCTTTGTCAATGGGTTTCACGTCT
GTCAAGCTGGGATTTTCCATTGATGTTATAAACGCGGCAAAGTTTCTTCT
ATCAAAAAACGTTGGACTACCTTTGAGCAATTGGGTGTATACACAAGGTG
CTGTGATTGATAGTTCAAATTCTTTGTTCTTAATCACGTTGAATGTGATT
GTTCCAACCGAAGGTGCTGCGGAAAAGGAAGCGTCTGCAACCGATTTCAT
CACGAGTGGAAAACTTGATGAGGAATTCGCCAATTTGGGATTGGCAGACC
TGTCGTTCACAATAATGAACCCAGAAGCGGCTGACAACGACATTAGTCCT
TCGCAAGTACCGCAGTCCAATCTTAAGGAGCTTGTAGACGCATGGCCCAC
TATCGCAGAGGGGGAGGAATCGTCGCGTATGATAGATCTGTACGTGCAAT
CTCCTACCATATTCTTTCCTCCCAAACTCAAAGAGGCTATTCTGTGGTTT
GTTGGGAACGAGACAGACACGTTAACTGAGCCAACAAGTTGGTTCATGCC
CGAACTCGCAGTGCTCAACTCAACGCGCGGCGAATACATCGCAAGTCTAA
TTCACATTGGAGGCCAAAACGAGACAGAAGCTGTGGTGATAAAAAGCACG
GAGTACGTGGCTCGTGGAGGACTTTCGCAAGCACTACTCGAAAGCCGGGC
GCGCGATGTGAACATCACCATGCTTCCCAAGGTGACGCTCGTGGGTGCGG
AAAACGAGGCGCCTAAATCGCGAGATGAAGTTGCAGTCGATTTGCTGTTT
AGATTGTCCGCACCTATTAGCGGAATTACAAAGGAAGTGGTGGATATTAT
GAAGAAACGGTGCGCAGCTGTTACAAACACGCGCCAAAGCGCGTGGTGGG
TGGGTGTAATCGAAGCAGAGGTTGAGGGAAACGACAATGGACCGTTCAAA
CTTGACTTGCGAGCGATGGTGTCCAAAACGCAAACACTGGAGACAGTTCG
ACTGGTGGCGGATGTGGTTCGGTCAAGGAAACTAGATCACGAGTTGTGGG
CATCTGGACGGACCGACATGCTGGTGCGGCTGAGACCAAGGATGACAAAG
TTCAAGTCGAACGGAAGTGGAGGTAACGCCATCCGGTCCACAGCAGCGAC
GGTAGCGGCTAGTATAGCGGGAATGCTGCTCATCGTGGTGATAAGCGCGG
CCATACTGTGCTTGCTGCCGAGGGAGGGCAACTTTGGGCCGGTGCGCAGT
TTCCTCGGACAGACTGAGAAGAGTGGGAAGCCGTGGCCGTTTGGAAGAGG
AGCGGCATAG

Coding sequence (CDS) from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930-

>Gcaud7612.t1 ID=Gcaud7612.t1|Name=Gcaud7612.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1410bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:6521..7930- (Gracilaria caudata M_176_S67 male)
ATGTTTCGTTCTTTCGTGATAGGCAGCTTCGTCATTCTCATTGCTTCAAG
CAGTGCACAAGCTCAGAACTCCGAGGCGCCGCCACCTGACCCGCCACCTG
AGCTTGAGGATGGGCACACAATCTTTGCTTTGTCAATGGGTTTCACGTCT
GTCAAGCTGGGATTTTCCATTGATGTTATAAACGCGGCAAAGTTTCTTCT
ATCAAAAAACGTTGGACTACCTTTGAGCAATTGGGTGTATACACAAGGTG
CTGTGATTGATAGTTCAAATTCTTTGTTCTTAATCACGTTGAATGTGATT
GTTCCAACCGAAGGTGCTGCGGAAAAGGAAGCGTCTGCAACCGATTTCAT
CACGAGTGGAAAACTTGATGAGGAATTCGCCAATTTGGGATTGGCAGACC
TGTCGTTCACAATAATGAACCCAGAAGCGGCTGACAACGACATTAGTCCT
TCGCAAGTACCGCAGTCCAATCTTAAGGAGCTTGTAGACGCATGGCCCAC
TATCGCAGAGGGGGAGGAATCGTCGCGTATGATAGATCTGTACGTGCAAT
CTCCTACCATATTCTTTCCTCCCAAACTCAAAGAGGCTATTCTGTGGTTT
GTTGGGAACGAGACAGACACGTTAACTGAGCCAACAAGTTGGTTCATGCC
CGAACTCGCAGTGCTCAACTCAACGCGCGGCGAATACATCGCAAGTCTAA
TTCACATTGGAGGCCAAAACGAGACAGAAGCTGTGGTGATAAAAAGCACG
GAGTACGTGGCTCGTGGAGGACTTTCGCAAGCACTACTCGAAAGCCGGGC
GCGCGATGTGAACATCACCATGCTTCCCAAGGTGACGCTCGTGGGTGCGG
AAAACGAGGCGCCTAAATCGCGAGATGAAGTTGCAGTCGATTTGCTGTTT
AGATTGTCCGCACCTATTAGCGGAATTACAAAGGAAGTGGTGGATATTAT
GAAGAAACGGTGCGCAGCTGTTACAAACACGCGCCAAAGCGCGTGGTGGG
TGGGTGTAATCGAAGCAGAGGTTGAGGGAAACGACAATGGACCGTTCAAA
CTTGACTTGCGAGCGATGGTGTCCAAAACGCAAACACTGGAGACAGTTCG
ACTGGTGGCGGATGTGGTTCGGTCAAGGAAACTAGATCACGAGTTGTGGG
CATCTGGACGGACCGACATGCTGGTGCGGCTGAGACCAAGGATGACAAAG
TTCAAGTCGAACGGAAGTGGAGGTAACGCCATCCGGTCCACAGCAGCGAC
GGTAGCGGCTAGTATAGCGGGAATGCTGCTCATCGTGGTGATAAGCGCGG
CCATACTGTGCTTGCTGCCGAGGGAGGGCAACTTTGGGCCGGTGCGCAGT
TTCCTCGGACAGACTGAGAAGAGTGGGAAGCCGTGGCCGTTTGGAAGAGG
AGCGGCATAG