Gcaud7531.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7531.t1
Unique Name	Gcaud7531.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	255

Homology

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A2V3IXK3_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXK3_9FLOR)

HSP 1 Score: 161 bits (407), Expect = 4.390e-42
Identity = 86/147 (58.50%), Postives = 107/147 (72.79%), Query Frame = 0

Query:   36 EKAPMDVEK-APYSGNETGGDIGQKRKRDSSQFESQSNKRHQPSATQDEELRVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPAGSKPGNGPR------RGGPRG 175
            EK PMD+++ +    N +   +GQKRK+D     SQ  K+H+P+    ++LRVFVGGVPFS TEDELGS  SECGEITDLFLPRDRETDRIRG+AF+SFA++   +AA++LDG+ LKGR LR+NPAGSKPG          RG PRG
Sbjct:  340 EKVPMDIDQQSTPEKNLSAQHVGQKRKQDLDDQNSQPFKKHEPNVRPSDDLRVFVGGVPFSITEDELGSYFSECGEITDLFLPRDRETDRIRGFAFISFANNLGAKAAMELDGSLLKGRHLRVNPAGSKPGXXXXXXXXXXRGAPRG 486

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BLAST of Gcaud7531.t1 vs. uniprot
Match: R7Q3L3_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3L3_CHOCR)

HSP 1 Score: 140 bits (353), Expect = 8.280e-35
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 0

Query:   39 PMDVEKAPYSGNETGGDIGQKRKRDSSQFESQSNKRHQPSATQDEELRVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPAGSKPGNGPRRGG 172
            PM VEK     ++    +GQKR   S++   Q +KRHQ +A  +EE+RVFVG +P++ TED+L   L  CGE+TD++LPRDRET+R+RG+ FVSF++ +  QAA ++DG   KGR L INPAGSKP  G  RGG
Sbjct:  303 PMSVEKGKLHDDKMLAQVGQKRDAPSAENTPQPHKRHQAAAGSEEEVRVFVGNIPWTITEDDLAETLGSCGELTDIYLPRDRETERLRGFGFVSFSEPSGAQAACEMDGVMCKGRPLNINPAGSKPSGGNSRGG 436

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A1V5XRI9_9BACT (RNA recognition motif n=1 Tax=Parcubacteria group bacterium ADurb.Bin192 TaxID=1852938 RepID=A0A1V5XRI9_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 9.850e-18
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query:   86 RVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKL-DGTFLKGRRLRINPAGSKPGNGPRR 170
            ++FVGG+P+  TEDEL  L S+ GE+  +F+P DRET R RG+AFV  AD  A + A+ + DG+ + GR + +N A +    GPRR
Sbjct:    4 KLFVGGIPYRTTEDELQQLFSQAGEVVSVFIPMDRETHRPRGFAFVEMADDAAAEKAISMFDGSDMGGRSIAVNKARAMEDRGPRR 89

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A1X6NUQ8_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUQ8_PORUM)

HSP 1 Score: 89.7 bits (221), Expect = 7.830e-17
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 0

Query:   28 SEDPKEVKEKAPMDVEKAPYSGNETGGDIGQKRKRDSSQFESQSNKRHQPSATQDEELRVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADST-AVQAALKLDGTFLKGRRLRINPAGSKPGNGPR 169
            S+D KE    A M V K P S N      G KR  D++  +S   KRH P+     E+R+FVG +PF+ + +EL      CG + D++ P DRET+R RG+ FVS+ +   A +A  +LDG    GR LRIN AGSKP  G R
Sbjct:  266 SDDDKESDGDAEM-VIKTPGSSNG-----GVKRAADAA--DSGDAKRHAPADDNAGEVRLFVGNLPFNASTEELAEHFGSCGAVADVYCPMDRETERPRGFGFVSYEEPEGASKAVAELDGVDFMGRALRINFAGSKPSGGDR 400

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A1F7UMU1_9BACT (RNA-binding protein n=1 Tax=Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_12_FULL_60_25 TaxID=1802399 RepID=A0A1F7UMU1_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-16
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0

Query:   86 RVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKL-DGTFLKGRRLRINPAGSKPGNGPRRGGPR 174
            ++FVGG+P+  T++EL  L S+ GE++ +F+P DRET+R RG+AFV  AD  A + A+ + DG+ + GRR+ +N A       PR  GPR
Sbjct:    4 KLFVGGIPYRATDEELRQLFSQAGEVSSVFIPMDRETNRPRGFAFVEMADDAAAEKAISMFDGSDMGGRRIAVNKARPMEERAPR--GPR 91

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A7S3RMJ1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RMJ1_9SPIT)

HSP 1 Score: 81.3 bits (199), Expect = 1.630e-15
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0

Query:   85 LRVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPAGSKPGNGPRRG 171
            L++FVGG+PFS T+++L    +ECGE+TDL +P++ E  + RG AF++FA    ++AALK DG    GR L++N AG +   G  +G
Sbjct:   71 LKIFVGGLPFSTTQEQLKKDFTECGEVTDLHMPKNEE-GQSRGIAFITFATQEGLEAALKYDGDEYGGRTLKVNKAGDRGEKGKGKG 156

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A2V0PKB7_9CHLO (RRM domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PKB7_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 6.380e-15
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 0

Query:   85 LRVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPAGSKPG 165
            ++++VG + + CT D+L  L  + GE+TD F+P DRET R RG+ FV+ AD  A  A  +L+ T  +GR LR+N A ++ G
Sbjct:    1 MKMYVGNLSWGCTPDDLYQLFGQFGEVTDAFIPSDRETGRSRGFGFVTMADEAAATAMAQLNNTDFQGRALRVNEAQARDG 81

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A2E7BKY2_9BACT (RNA-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E7BKY2_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 2.420e-14
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0

Query:   86 RVFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAAL-KLDGTFLKGRRLRINPA 160
            R+FVG + +  ++ +L +L ++ G++T++FLP DR T++ RG+AF+ F DS+AV  A+ KLDGT L GR LR++ A
Sbjct:    4 RIFVGNLSYETSQTDLETLFAQAGQVTEVFLPLDRATNKPRGFAFIEFQDSSAVSQAIEKLDGTELNGRNLRVSEA 79

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BLAST of Gcaud7531.t1 vs. uniprot
Match: A0A6N6N4S2_9DELT (RNA-binding protein n=2 Tax=Desulfovibrio TaxID=872 RepID=A0A6N6N4S2_9DELT)

HSP 1 Score: 75.5 bits (184), Expect = 4.210e-14
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0

Query:   87 VFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPAGSKP 164
            ++VG +P+SCTEDE+ +     GE+T + L  DRET R RG+ FV   D+ AV+A   LDGT   GR +++N A  +P
Sbjct:    5 IYVGNLPWSCTEDEVRAAFEAYGEVTSVKLIEDRETGRPRGFGFVEMEDAGAVEAIKNLDGTDFGGRNIKVNEARPRP 82

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BLAST of Gcaud7531.t1 vs. uniprot
Match: E6W6M6_DESIS (RNP-1 like RNA-binding protein n=2 Tax=Chrysiogenaceae TaxID=189770 RepID=E6W6M6_DESIS)

HSP 1 Score: 75.1 bits (183), Expect = 5.160e-14
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0

Query:   87 VFVGGVPFSCTEDELGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFLKGRRLRINPA 160
            ++VG +PFS TEDELG+L +E G++  + L  DRET ++RG+AFV   D+ ++ A   LDG    GR+LR+N A
Sbjct:    4 IYVGNLPFSTTEDELGNLFAEYGDVYSIKLIADRETGKLRGFAFVEMEDNESLAAIEALDGFEFGGRKLRVNEA 77

The following BLAST results are available for this feature:

BLAST of Gcaud7531.t1 vs. uniprot

BLAST of Gcaud7531.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IXK3_9FLOR	4.390e-42	58.50	Putative RNA-binding protein RbpE n=1 Tax=Gracilar...	[more]
R7Q3L3_CHOCR	8.280e-35	51.49	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
A0A1V5XRI9_9BACT	9.850e-18	46.51	RNA recognition motif n=1 Tax=Parcubacteria group ...	[more]
A0A1X6NUQ8_PORUM	7.830e-17	42.66	RRM domain-containing protein n=1 Tax=Porphyra umb...	[more]
A0A1F7UMU1_9BACT	1.140e-16	44.44	RNA-binding protein n=1 Tax=Candidatus Uhrbacteria...	[more]
A0A7S3RMJ1_9SPIT	1.630e-15	44.83	Hypothetical protein (Fragment) n=1 Tax=Strombidin...	[more]
A0A2V0PKB7_9CHLO	6.380e-15	43.21	RRM domain-containing protein n=1 Tax=Raphidocelis...	[more]
A0A2E7BKY2_9BACT	2.420e-14	46.05	RNA-binding protein n=1 Tax=Acidobacteria bacteriu...	[more]
A0A6N6N4S2_9DELT	4.210e-14	44.87	RNA-binding protein n=2 Tax=Desulfovibrio TaxID=87...	[more]
E6W6M6_DESIS	5.160e-14	47.30	RNP-1 like RNA-binding protein n=2 Tax=Chrysiogena...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 8.2E-24 score: 95.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 e-value: 6.9E-19 score: 67.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 17.762232
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..200 e-value: 3.8E-34 score: 119.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..42
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 14..218
None	No IPR available	CDD	cd00590	RRM_SF	coord: 87..158 e-value: 2.19233E-19 score: 77.7305
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:36010..36774 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7531.t1	Gcaud7531.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_51_length_65224_cov_4.623524 36010..36774 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7531.t1 ID=Gcaud7531.t1|Name=Gcaud7531.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MRTKANGNKAAPVSDQEQDSSESEDSSSEDPKEVKEKAPMDVEKAPYSGN
ETGGDIGQKRKRDSSQFESQSNKRHQPSATQDEELRVFVGGVPFSCTEDE
LGSLLSECGEITDLFLPRDRETDRIRGYAFVSFADSTAVQAALKLDGTFL
KGRRLRINPAGSKPGNGPRRGGPRGRGGGRGGRGGRGGRGGRGGYVGGFG
DGGGGRDWGRGGGQRGGRGRGFGNRGGFGGRGGSANFANGGIKGTKTTFE
DDSD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf