Gcaud7465.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7465.t1
Unique Name	Gcaud7465.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	567

Homology

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BLAST of Gcaud7465.t1 vs. uniprot
Match: A0A2V3ILV3_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILV3_9FLOR)

HSP 1 Score: 469 bits (1206), Expect = 1.370e-154
Identity = 288/592 (48.65%), Postives = 340/592 (57.43%), Query Frame = 0

Query:    1 MGATLSALLLRLEQQTAFFDSKPDILAWQVREALRTEFFQIVYPTPPTPALCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMAAGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVQVAVQPPSHPPPSRAKRRRPAAQKRPRQSRSRARRASQPMTPASSPPQSAAASVSLPQRPPLPHMHRG---------------------GTSLSAPSPPSTPMRSSPQLVV--GAQSQQLGALAP--APTSQSTPARVSNVVARLARQDTSGVFVPKELLTFAPPPRARLCDGLVSHASGSLRRALDVGAGGVSASLHRVKNLVMIERLLARKFEAQQVLYYVVWGGRDVKNGSWEKREALMKDVPALVRQFDVRHPLLPEQGKLHGAHGVHGRDGWQASSDAGVNSNGASWQQSQVGGSDGMIXXXXXXXXXXXXXXXXXXXXXXXXVLGGVAAGEVENRVSTTTSVGRVSSTTEVGSSGGGHGAKQAKLYVDDLTGERIASWVDTPIVELNICGMILQIRRPDEAVLHNDATAAVRDTKKRQARFKQENILLGERLFPLSKSEAKAAVEAS 567
            MGATLSAL LRLEQQTAFFD+KPDILAWQVREA+RTEFF+I YPTPP+ ALCALVQ+CEQLLQRY LPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMAAGITVTEA+LHLDGPDGGAFQWVQTHALTPLAPLLAAVQ   Q   HP P                             P S+ P                                            SLSA + P T +  +P +     A +  +  L P  AP++Q  PA VSNV ARLA+QD SGV+VP ELLT+ PPPRAR+CD +++ ASG +RRALDVG+GGV +++HRV+ L  ++RL AR+     V Y+VVW GR + +GSWEKR+AL++DVPALVR FDVRHPLL E   L    G                                                                                              G ++ K +VDD++G RI +WVD+PIVEL   GM+LQIRR + AVLHNDA +AVRDT++RQAR K E    G RLF L++SEA+AAVEAS
Sbjct:   65 MGATLSALQLRLEQQTAFFDAKPDILAWQVREAIRTEFFKIHYPTPPSAALCALVQSCEQLLQRYRLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMAAGITVTEALLHLDGPDGGAFQWVQTHALTPLAPLLAAVQAQPQL-HHPVPH----------------------------PVSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAPSLSA-THPDTELHPAPTVPPPSAAAAGDVAVLMPTSAPSTQPAPAPVSNVAARLAKQDASGVYVPDELLTYVPPPRARICDTVMTGASGCVRRALDVGSGGVVSAVHRVRQLAAVQRLAARQIRDDGVYYFVVWSGRALSDGSWEKRDALLRDVPALVRMFDVRHPLLEEHETLQRGTG----------------------------------------------------------------------------------------------GKEEGKEFVDDVSGLRIPAWVDSPIVELTFSGMVLQIRRGEGAVLHNDAASAVRDTRRRQARLKSEAAAAGGRLFALTRSEARAAVEAS 532

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BLAST of Gcaud7465.t1 vs. uniprot
Match: R7Q7D9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7D9_CHOCR)

HSP 1 Score: 96.3 bits (238), Expect = 4.110e-18
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 0

Query:  477 GHGAKQAKLYVDDLTGERIASWVDTPIVELNICGMILQIRRPDEAVLHNDATAAVRDTKKRQARFKQENILLGERLFPLSKSEAKAAVEAS 567
            G  ++  + +VDD++G  I  +VD+PI+EL   GM+L IR+  E  LHNDA A +RD KKRQ+RFKQENI   E+LF L+KSEA+ A++AS
Sbjct:   44 GEDSESGRKFVDDISGVEIPGYVDSPILELGFAGMVLHIRQSREYSLHNDALAVIRDYKKRQSRFKQENIRSAEKLFLLTKSEARMALDAS 134

The following BLAST results are available for this feature:

BLAST of Gcaud7465.t1 vs. uniprot

BLAST of Gcaud7465.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3ILV3_9FLOR	1.370e-154	48.65	Chromo domain-containing protein n=1 Tax=Gracilari...	[more]
R7Q7D9_CHOCR	4.110e-18	52.75	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 312..370 e-value: 4.1E-6 score: 28.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..171
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 318..378 score: 10.3493
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 318..374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1399_length_10964_cov_3.691529	contig	NODE_1399_length_10964_cov_3.691529:8178..9878 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7465.t1	Gcaud7465.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1399_length_10964_cov_3.691529 8178..9878 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=567bp
MGATLSALLLRLEQQTAFFDSKPDILAWQVREALRTEFFQIVYPTPPTPA
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
AAGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVQVAVQPPSHPP
PSRAKRRRPAAQKRPRQSRSRARRASQPMTPASSPPQSAAASVSLPQRPP
LPHMHRGGTSLSAPSPPSTPMRSSPQLVVGAQSQQLGALAPAPTSQSTPA
RVSNVVARLARQDTSGVFVPKELLTFAPPPRARLCDGLVSHASGSLRRAL
DVGAGGVSASLHRVKNLVMIERLLARKFEAQQVLYYVVWGGRDVKNGSWE
KREALMKDVPALVRQFDVRHPLLPEQGKLHGAHGVHGRDGWQASSDAGVN
SNGASWQQSQVGGSDGMIGARGGGTGAAGGGGSDGGAIGIDGVLGGVAAG
EVENRVSTTTSVGRVSSTTEVGSSGGGHGAKQAKLYVDDLTGERIASWVD
TPIVELNICGMILQIRRPDEAVLHNDATAAVRDTKKRQARFKQENILLGE
RLFPLSKSEAKAAVEAS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000953	Chromo/chromo_shadow_dom
IPR016197	Chromo-like_dom_sf