Gcaud7465.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7465.t1
Unique Name	Gcaud7465.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1399_length_10964_cov_3.691529	contig	NODE_1399_length_10964_cov_3.691529:8178..9878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7465	Gcaud7465	Gracilaria caudata M_176_S67 male	gene	NODE_1399_length_10964_cov_3.691529 8178..9878 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7465.t1.start1	Gcaud7465.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1399_length_10964_cov_3.691529 8178..8180 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7465.t1.CDS1	Gcaud7465.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1399_length_10964_cov_3.691529 8178..9878 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7465.t1.exon1	Gcaud7465.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1399_length_10964_cov_3.691529 8178..9878 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7465.t1	Gcaud7465.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1399_length_10964_cov_3.691529 8178..9878 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+
coding sequence from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+

mRNA sequence

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp
MGATLSALLLRLEQQTAFFDSKPDILAWQVREALRTEFFQIVYPTPPTPA
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
AAGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVQVAVQPPSHPP
PSRAKRRRPAAQKRPRQSRSRARRASQPMTPASSPPQSAAASVSLPQRPP
LPHMHRGGTSLSAPSPPSTPMRSSPQLVVGAQSQQLGALAPAPTSQSTPA
RVSNVVARLARQDTSGVFVPKELLTFAPPPRARLCDGLVSHASGSLRRAL
DVGAGGVSASLHRVKNLVMIERLLARKFEAQQVLYYVVWGGRDVKNGSWE
KREALMKDVPALVRQFDVRHPLLPEQGKLHGAHGVHGRDGWQASSDAGVN
SNGASWQQSQVGGSDGMIGARGGGTGAAGGGGSDGGAIGIDGVLGGVAAG
EVENRVSTTTSVGRVSSTTEVGSSGGGHGAKQAKLYVDDLTGERIASWVD
TPIVELNICGMILQIRRPDEAVLHNDATAAVRDTKKRQARFKQENILLGE
RLFPLSKSEAKAAVEAS

spliced messenger RNA

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCACGCTCAGCGCGCTGCTGCTCCGTCTCGAGCAACAAACCGC
CTTCTTCGACTCCAAGCCAGACATTCTCGCCTGGCAGGTGCGCGAGGCGC
TGCGCACCGAGTTCTTCCAGATCGTGTATCCCACCCCCCCAACGCCCGCG
CTCTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAGCGTTATCATCT
GCCCCATCGTCCCTTCTTCTTCCCCGGCGGTCGCGTGGCCGTGCCCACCG
AGGCCGGCTCGCGACGAGCCGCCACTTCTCTTCAGCTGCGCTTCAAAATG
GCCGCGGGCATCACTGTCACAGAGGCCATGCTTCATCTCGACGGACCGGA
CGGCGGCGCCTTTCAGTGGGTGCAGACGCATGCACTCACGCCGCTCGCGC
CGCTGCTAGCCGCCGTACAAGTGGCCGTGCAGCCGCCGTCACACCCTCCG
CCGTCGCGCGCGAAGCGTCGTCGCCCCGCCGCCCAGAAACGTCCCCGTCA
ATCGCGCTCTCGCGCGCGGCGCGCTTCTCAACCCATGACACCTGCATCGT
CACCGCCGCAAAGCGCCGCTGCGTCAGTGTCGTTGCCTCAGAGACCGCCA
CTTCCTCACATGCATCGTGGCGGCACATCACTTTCCGCGCCGTCGCCGCC
TTCCACGCCCATGCGTTCGTCGCCGCAGCTGGTGGTGGGCGCGCAGTCGC
AACAGCTGGGTGCGCTTGCGCCGGCGCCTACGTCGCAAAGCACGCCTGCG
CGCGTGTCCAACGTGGTGGCACGATTGGCTAGACAGGATACTTCGGGGGT
GTTTGTGCCGAAGGAATTGCTTACGTTTGCGCCACCGCCGAGGGCTAGGT
TGTGTGACGGCTTGGTGTCACATGCGAGTGGATCGTTGCGACGCGCGTTG
GACGTTGGAGCGGGCGGCGTTTCGGCGTCGCTGCATCGTGTGAAGAACCT
CGTCATGATTGAGCGCCTGCTGGCGCGCAAGTTCGAGGCGCAGCAGGTGT
TGTATTATGTCGTGTGGGGCGGTCGCGATGTGAAGAACGGAAGCTGGGAG
AAGCGGGAGGCGCTGATGAAGGACGTGCCGGCGCTGGTGAGGCAGTTCGA
TGTGAGACACCCACTGCTGCCCGAGCAAGGGAAGCTGCACGGCGCGCACG
GCGTGCACGGTCGCGACGGGTGGCAAGCGAGCAGCGACGCGGGCGTGAAT
AGCAACGGCGCGAGCTGGCAGCAGTCTCAGGTGGGCGGCAGCGACGGAAT
GATTGGTGCGCGTGGTGGTGGCACTGGTGCAGCGGGCGGAGGCGGCTCGG
ATGGCGGCGCTATAGGCATTGATGGCGTGCTGGGAGGTGTGGCTGCGGGT
GAGGTTGAGAACAGGGTATCGACAACGACGTCGGTTGGTCGCGTGAGCTC
CACAACCGAGGTTGGCAGCAGTGGGGGGGGACATGGAGCAAAGCAAGCGA
AGCTGTACGTGGATGACTTGACTGGTGAGCGTATCGCGAGCTGGGTGGAC
ACTCCGATCGTTGAGCTGAACATCTGCGGCATGATCCTGCAGATTCGGCG
TCCGGACGAGGCGGTGCTGCACAACGACGCCACGGCGGCGGTGCGCGACA
CAAAGAAGCGGCAGGCGCGCTTCAAGCAGGAGAACATTTTACTGGGTGAA
CGGCTGTTCCCGCTGAGCAAGTCGGAAGCGAAGGCAGCGGTGGAGGCGAG
C

protein sequence of Gcaud7465.t1

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=567bp
MGATLSALLLRLEQQTAFFDSKPDILAWQVREALRTEFFQIVYPTPPTPA
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
AAGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVQVAVQPPSHPP
PSRAKRRRPAAQKRPRQSRSRARRASQPMTPASSPPQSAAASVSLPQRPP
LPHMHRGGTSLSAPSPPSTPMRSSPQLVVGAQSQQLGALAPAPTSQSTPA
RVSNVVARLARQDTSGVFVPKELLTFAPPPRARLCDGLVSHASGSLRRAL
DVGAGGVSASLHRVKNLVMIERLLARKFEAQQVLYYVVWGGRDVKNGSWE
KREALMKDVPALVRQFDVRHPLLPEQGKLHGAHGVHGRDGWQASSDAGVN
SNGASWQQSQVGGSDGMIGARGGGTGAAGGGGSDGGAIGIDGVLGGVAAG
EVENRVSTTTSVGRVSSTTEVGSSGGGHGAKQAKLYVDDLTGERIASWVD
TPIVELNICGMILQIRRPDEAVLHNDATAAVRDTKKRQARFKQENILLGE
RLFPLSKSEAKAAVEAS

mRNA from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+ (Gracilaria caudata M_176_S67 male)
ATGGGCGCCACGCTCAGCGCGCTGCTGCTCCGTCTCGAGCAACAAACCGC
CTTCTTCGACTCCAAGCCAGACATTCTCGCCTGGCAGGTGCGCGAGGCGC
TGCGCACCGAGTTCTTCCAGATCGTGTATCCCACCCCCCCAACGCCCGCG
CTCTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAGCGTTATCATCT
GCCCCATCGTCCCTTCTTCTTCCCCGGCGGTCGCGTGGCCGTGCCCACCG
AGGCCGGCTCGCGACGAGCCGCCACTTCTCTTCAGCTGCGCTTCAAAATG
GCCGCGGGCATCACTGTCACAGAGGCCATGCTTCATCTCGACGGACCGGA
CGGCGGCGCCTTTCAGTGGGTGCAGACGCATGCACTCACGCCGCTCGCGC
CGCTGCTAGCCGCCGTACAAGTGGCCGTGCAGCCGCCGTCACACCCTCCG
CCGTCGCGCGCGAAGCGTCGTCGCCCCGCCGCCCAGAAACGTCCCCGTCA
ATCGCGCTCTCGCGCGCGGCGCGCTTCTCAACCCATGACACCTGCATCGT
CACCGCCGCAAAGCGCCGCTGCGTCAGTGTCGTTGCCTCAGAGACCGCCA
CTTCCTCACATGCATCGTGGCGGCACATCACTTTCCGCGCCGTCGCCGCC
TTCCACGCCCATGCGTTCGTCGCCGCAGCTGGTGGTGGGCGCGCAGTCGC
AACAGCTGGGTGCGCTTGCGCCGGCGCCTACGTCGCAAAGCACGCCTGCG
CGCGTGTCCAACGTGGTGGCACGATTGGCTAGACAGGATACTTCGGGGGT
GTTTGTGCCGAAGGAATTGCTTACGTTTGCGCCACCGCCGAGGGCTAGGT
TGTGTGACGGCTTGGTGTCACATGCGAGTGGATCGTTGCGACGCGCGTTG
GACGTTGGAGCGGGCGGCGTTTCGGCGTCGCTGCATCGTGTGAAGAACCT
CGTCATGATTGAGCGCCTGCTGGCGCGCAAGTTCGAGGCGCAGCAGGTGT
TGTATTATGTCGTGTGGGGCGGTCGCGATGTGAAGAACGGAAGCTGGGAG
AAGCGGGAGGCGCTGATGAAGGACGTGCCGGCGCTGGTGAGGCAGTTCGA
TGTGAGACACCCACTGCTGCCCGAGCAAGGGAAGCTGCACGGCGCGCACG
GCGTGCACGGTCGCGACGGGTGGCAAGCGAGCAGCGACGCGGGCGTGAAT
AGCAACGGCGCGAGCTGGCAGCAGTCTCAGGTGGGCGGCAGCGACGGAAT
GATTGGTGCGCGTGGTGGTGGCACTGGTGCAGCGGGCGGAGGCGGCTCGG
ATGGCGGCGCTATAGGCATTGATGGCGTGCTGGGAGGTGTGGCTGCGGGT
GAGGTTGAGAACAGGGTATCGACAACGACGTCGGTTGGTCGCGTGAGCTC
CACAACCGAGGTTGGCAGCAGTGGGGGGGGACATGGAGCAAAGCAAGCGA
AGCTGTACGTGGATGACTTGACTGGTGAGCGTATCGCGAGCTGGGTGGAC
ACTCCGATCGTTGAGCTGAACATCTGCGGCATGATCCTGCAGATTCGGCG
TCCGGACGAGGCGGTGCTGCACAACGACGCCACGGCGGCGGTGCGCGACA
CAAAGAAGCGGCAGGCGCGCTTCAAGCAGGAGAACATTTTACTGGGTGAA
CGGCTGTTCCCGCTGAGCAAGTCGGAAGCGAAGGCAGCGGTGGAGGCGAG
C

Coding sequence (CDS) from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+

>Gcaud7465.t1 ID=Gcaud7465.t1|Name=Gcaud7465.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1701bp|location=Sequence derived from alignment at NODE_1399_length_10964_cov_3.691529:8178..9878+ (Gracilaria caudata M_176_S67 male)
ATGGGCGCCACGCTCAGCGCGCTGCTGCTCCGTCTCGAGCAACAAACCGC
CTTCTTCGACTCCAAGCCAGACATTCTCGCCTGGCAGGTGCGCGAGGCGC
TGCGCACCGAGTTCTTCCAGATCGTGTATCCCACCCCCCCAACGCCCGCG
CTCTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAGCGTTATCATCT
GCCCCATCGTCCCTTCTTCTTCCCCGGCGGTCGCGTGGCCGTGCCCACCG
AGGCCGGCTCGCGACGAGCCGCCACTTCTCTTCAGCTGCGCTTCAAAATG
GCCGCGGGCATCACTGTCACAGAGGCCATGCTTCATCTCGACGGACCGGA
CGGCGGCGCCTTTCAGTGGGTGCAGACGCATGCACTCACGCCGCTCGCGC
CGCTGCTAGCCGCCGTACAAGTGGCCGTGCAGCCGCCGTCACACCCTCCG
CCGTCGCGCGCGAAGCGTCGTCGCCCCGCCGCCCAGAAACGTCCCCGTCA
ATCGCGCTCTCGCGCGCGGCGCGCTTCTCAACCCATGACACCTGCATCGT
CACCGCCGCAAAGCGCCGCTGCGTCAGTGTCGTTGCCTCAGAGACCGCCA
CTTCCTCACATGCATCGTGGCGGCACATCACTTTCCGCGCCGTCGCCGCC
TTCCACGCCCATGCGTTCGTCGCCGCAGCTGGTGGTGGGCGCGCAGTCGC
AACAGCTGGGTGCGCTTGCGCCGGCGCCTACGTCGCAAAGCACGCCTGCG
CGCGTGTCCAACGTGGTGGCACGATTGGCTAGACAGGATACTTCGGGGGT
GTTTGTGCCGAAGGAATTGCTTACGTTTGCGCCACCGCCGAGGGCTAGGT
TGTGTGACGGCTTGGTGTCACATGCGAGTGGATCGTTGCGACGCGCGTTG
GACGTTGGAGCGGGCGGCGTTTCGGCGTCGCTGCATCGTGTGAAGAACCT
CGTCATGATTGAGCGCCTGCTGGCGCGCAAGTTCGAGGCGCAGCAGGTGT
TGTATTATGTCGTGTGGGGCGGTCGCGATGTGAAGAACGGAAGCTGGGAG
AAGCGGGAGGCGCTGATGAAGGACGTGCCGGCGCTGGTGAGGCAGTTCGA
TGTGAGACACCCACTGCTGCCCGAGCAAGGGAAGCTGCACGGCGCGCACG
GCGTGCACGGTCGCGACGGGTGGCAAGCGAGCAGCGACGCGGGCGTGAAT
AGCAACGGCGCGAGCTGGCAGCAGTCTCAGGTGGGCGGCAGCGACGGAAT
GATTGGTGCGCGTGGTGGTGGCACTGGTGCAGCGGGCGGAGGCGGCTCGG
ATGGCGGCGCTATAGGCATTGATGGCGTGCTGGGAGGTGTGGCTGCGGGT
GAGGTTGAGAACAGGGTATCGACAACGACGTCGGTTGGTCGCGTGAGCTC
CACAACCGAGGTTGGCAGCAGTGGGGGGGGACATGGAGCAAAGCAAGCGA
AGCTGTACGTGGATGACTTGACTGGTGAGCGTATCGCGAGCTGGGTGGAC
ACTCCGATCGTTGAGCTGAACATCTGCGGCATGATCCTGCAGATTCGGCG
TCCGGACGAGGCGGTGCTGCACAACGACGCCACGGCGGCGGTGCGCGACA
CAAAGAAGCGGCAGGCGCGCTTCAAGCAGGAGAACATTTTACTGGGTGAA
CGGCTGTTCCCGCTGAGCAAGTCGGAAGCGAAGGCAGCGGTGGAGGCGAG
C