Gcaud740.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud740.t1
Unique NameGcaud740.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length356
Homology
BLAST of Gcaud740.t1 vs. uniprot
Match: A0A2V3J6W2_9FLOR (Protein NBR1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6W2_9FLOR)

HSP 1 Score: 410 bits (1053), Expect = 3.530e-137
Identity = 205/326 (62.88%), Postives = 248/326 (76.07%), Query Frame = 0
Query:   30 LGPIFSALYPMMAACAAQGTANISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGPLNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIPWNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQATNRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSRGPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLEAQIPPTAATGGATATAPAQDTSQVPPTSTPDPSPAQG 355
            + P F+A      A A Q    + Q TR AF  LK  V+NS+N N+A +AA NAFPA++NWL  NLG++GP+N+EA++SLI T+DRS+RP+VG+ ITD   +L+RTA+ DQAV+DI+R IPW  D P ++EA+F     + +  MPFQTH  VECDNCD  PIVG+RY+ATNR +YDLCS CY D +VSK+GIEF+   YIWEA LGDA AP+APLS+ SRG SVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAV QFQREYGL  NAQ GVYDDITAAS+ SMLE+Q+PPTA  GGATA AP+     +  +   DPSPAQG
Sbjct:  220 MAPFFTAXXXXXGAAAQQNAPAVGQATRAAFNNLKDIVVNSENRNIAMRAACNAFPAVKNWLANNLGQSGPVNSEAVESLINTIDRSVRPTVGDQITDSAANLIRTAMHDQAVLDIMRNIPWATDFPFDIEAQFRDGAQSNNYGMPFQTHTTVECDNCDATPIVGIRYKATNRQDYDLCSTCYNDSSVSKDGIEFQACKYIWEAELGDAKAPSAPLSVGSRGSSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVLQFQREYGLSSNAQAGVYDDITAASMLSMLESQVPPTATAGGATA-APSSGHDPMQTSGAQDPSPAQG 544          
BLAST of Gcaud740.t1 vs. uniprot
Match: R7QME1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QME1_CHOCR)

HSP 1 Score: 293 bits (750), Expect = 4.190e-92
Identity = 154/304 (50.66%), Postives = 199/304 (65.46%), Query Frame = 0
Query:   52 ISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGPLNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIPWNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQATNRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSRGPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLEAQIPPTAATGGATATAPAQDTSQVPPTSTPDPSPAQG 355
            +SQ TRDAF+Q + AV+++++      AAR   P +R+W+  NLG  GP+  E++  L+  ++ +I    G  ITDR + L+R AL+DQ VVD+LR +P +     + E       Y       F  H  VECDNC   P+ G R+ ATNR NYDLC  CY D  V K+GIEFK+  YIWEA LGDA  P+APLS+ +RGPSVAFLQKLLTDLG+MNE+MYRR VGMYGP+T+AAV QFQRE+GL    + GVYD  TAASL S++E Q+PPTAATG      PA+       T+ P+ SPA+G
Sbjct:  206 VSQDTRDAFDQARQAVLSAEDPMRIINAARAGAPVVRSWMNDNLGSEGPVREESVPPLVRDLEAAIGEGFGSDITDRAMELVRVALRDQVVVDMLRMLPEDFSFSWDAEMVPPGESYRTSG---FSVHTGVECDNCGKQPVRGSRFMATNRENYDLCDSCYNDETVDKQGIEFKECKYIWEARLGDAVVPSAPLSMWNRGPSVAFLQKLLTDLGFMNENMYRRAVGMYGPKTKAAVMQFQREHGLSDVVESGVYDATTAASLVSIIETQVPPTAATGSD----PAESGPSSATTTAPESSPARG 502          
BLAST of Gcaud740.t1 vs. uniprot
Match: R7Q2Z3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2Z3_CHOCR)

HSP 1 Score: 200 bits (508), Expect = 2.300e-56
Identity = 103/268 (38.43%), Postives = 157/268 (58.58%), Query Frame = 0
Query:   51 NISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGPLNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIPWNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQATNRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSRGPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLE 318
            ++S   + +F++L   +   ++T     A ++  P  R WL+++LG+ G     +I  ++T +   + P VGE  T R    + TAL D+ VV ILRK+      P+  E  F  +         F  H  ++C +C + PIVG R++ TNR N++LC+ C+ +  V+KEG++F +  Y+WE  L D   P APL +  RGP V FL K+LTD GYMNESMY R +G++  +T+AAV QFQ+E GL  +A+ G YD+ITA  L +M+E
Sbjct:  194 SVSPEVKVSFKKLVRYIKKEEDTGAIVSALKDNLPTFRKWLVSDLGDQGFPEEISIHVIVTALHEDLLPKVGEHTTSRITSFVSTALVDEGVVAILRKL--RSLGPMPWENGFTFSRIGKQGPRGFDVHHKIQCTSCGMRPIVGSRFKCTNRKNFNLCTNCHGNEQVAKEGMKFTECKYVWENVLVDVRVPPAPLKIGDRGPRVKFLHKVLTDAGYMNESMYLRQMGLFSTKTQAAVKQFQQEQGLGSSAEDGNYDEITANCLENMVE 459          
BLAST of Gcaud740.t1 vs. uniprot
Match: A0A1X6NTE0_PORUM (PG_binding_1 domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTE0_PORUM)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-6
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 0
Query:  236 GDATAPAAPLSLRSRGPSVAFLQKLLTDLGYM--NESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLEAQIPPTAATG 328
            G    P A L   + GP VA LQ+ LT +G +   +       G YGP T  AV++ QR++ L+     GVYDD+TAASL S+++A++P   A G
Sbjct:  528 GPLAVPPALLQPGASGPPVAALQRALTAVGVLAARDVAAPGAAGHYGPATTGAVARLQRDFDLDVLVP-GVYDDLTAASLNSLIDARVPVAMAAG 621          
BLAST of Gcaud740.t1 vs. uniprot
Match: S9NWG7_9DELT (Negative regulator of beta-lactamase expression n=2 Tax=Cystobacter fuscus TaxID=43 RepID=S9NWG7_9DELT)

HSP 1 Score: 58.9 bits (141), Expect = 2.830e-6
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 0
Query:  233 ASLGDATAPAAPLSLRSRGPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLEAQIPP 323
            A+    TAP A L   +RGP V  LQ  L  LGYM ++      G++G +T+AAV++FQ ++ L      G Y D+T A+L   L A   P
Sbjct:   16 AAAATVTAPPAGLEFGNRGPQVKQLQDALVKLGYMTKAQVATGPGIFGEKTKAAVTKFQADHKLPTT---GYYGDLTHAALKKALGADSKP 103          
BLAST of Gcaud740.t1 vs. uniprot
Match: A0A1X6NND5_PORUM (PG_binding_1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NND5_PORUM)

HSP 1 Score: 59.7 bits (143), Expect = 3.420e-6
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 0
Query:  236 GDATAPAAPLSLRSRGPSVAFLQKLLTDLGYM--NESMYRRVVGMYGPRTRAAVSQFQREYGLEGNAQLGVYDDITAASLASMLEAQIPPTAATG 328
            G    P A L   + GP VA LQ+ LT +G +   +       G +GP T  AV++ QR++ L+     GVYDD+TAASL S+++A++P   A G
Sbjct:  348 GPLVVPPALLQPGASGPPVAALQRALTAVGVLAARDVAAPGAAGHFGPATTGAVARLQRDFDLDVLVP-GVYDDLTAASLNSLIDARVPVAMAAG 441          
The following BLAST results are available for this feature:
BLAST of Gcaud740.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J6W2_9FLOR3.530e-13762.88Protein NBR1-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QME1_CHOCR4.190e-9250.66Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q2Z3_CHOCR2.300e-5638.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTE0_PORUM1.330e-640.00PG_binding_1 domain-containing protein (Fragment) ... [more]
S9NWG7_9DELT2.830e-638.46Negative regulator of beta-lactamase expression n=... [more]
A0A1X6NND5_PORUM3.420e-638.95PG_binding_1 domain-containing protein n=1 Tax=Por... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 178..225
e-value: 4.7E-9
score: 46.1
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 179..214
e-value: 5.2E-10
score: 39.0
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 178..212
score: 11.09374
IPR002477Peptidoglycan binding-likePFAMPF01471PG_binding_1coord: 250..312
e-value: 3.6E-9
score: 36.7
IPR036366PGBD superfamilyGENE3D1.10.101.10coord: 238..323
e-value: 1.3E-13
score: 52.5
IPR043145Zinc finger, ZZ-type superfamilyGENE3D3.30.60.90coord: 176..226
e-value: 3.6E-11
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 324..355
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 168..215
IPR036365PGBD-like superfamilySUPERFAMILY47090PGBD-likecoord: 241..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_978_length_15578_cov_4.427843contigNODE_978_length_15578_cov_4.427843:5082..6149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud740.t1Gcaud740.t1Gracilaria caudata M_176_S67 malemRNANODE_978_length_15578_cov_4.427843 5082..6149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MGGMGGVGGMGGVGGMGGWGGWGGWGGMGLGPIFSALYPMMAACAAQGTA
NISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGP
LNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIP
WNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQAT
NRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSR
GPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNA
QLGVYDDITAASLASMLEAQIPPTAATGGATATAPAQDTSQVPPTSTPDP
SPAQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ
IPR002477Peptidoglycan-bd-like
IPR036366PGBDSf
IPR043145Znf_ZZ_sf
IPR036365PGBD-like_sf