Gcaud740.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud740.t1
Unique Name	Gcaud740.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_978_length_15578_cov_4.427843	contig	NODE_978_length_15578_cov_4.427843:5082..6149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1242864.D187_007887
PFAMs	Amidase_2,PG_binding_1
Max annot lvl	28221\|Deltaproteobacteria
KEGG rclass	RC00064,RC00141
KEGG ko	ko:K01447
KEGG Reaction	R04112
Evalue	1.16e-06
EggNOG OGs	COG3023@1\|root,COG3023@2\|Bacteria,1RDHU@1224\|Proteobacteria,42X49@68525\|delta/epsilon subdivisions,2WT55@28221\|Deltaproteobacteria,2YXJ2@29\|Myxococcales
EC	3.5.1.28
Description	Ami_2
COG category	V
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud740	Gcaud740	Gracilaria caudata M_176_S67 male	gene	NODE_978_length_15578_cov_4.427843 5082..6149 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud740.t1.start1	Gcaud740.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_978_length_15578_cov_4.427843 5082..5084 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud740.t1.CDS1	Gcaud740.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_978_length_15578_cov_4.427843 5082..6149 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud740.t1.exon1	Gcaud740.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_978_length_15578_cov_4.427843 5082..6149 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud740.t1.stop1	Gcaud740.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_978_length_15578_cov_4.427843 6147..6149 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud740.t1	Gcaud740.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_978_length_15578_cov_4.427843 5082..6149 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+
coding sequence from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+

mRNA sequence

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MGGMGGVGGMGGVGGMGGWGGWGGWGGMGLGPIFSALYPMMAACAAQGTA
NISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGP
LNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIP
WNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQAT
NRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSR
GPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNA
QLGVYDDITAASLASMLEAQIPPTAATGGATATAPAQDTSQVPPTSTPDP
SPAQG*

spliced messenger RNA

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGAATGGGAGGAGTAGGCGGAATGGGAGGAGTAGGCGGAATGGG
AGGTTGGGGAGGATGGGGAGGATGGGGAGGTATGGGCCTGGGTCCCATCT
TTTCCGCCTTGTATCCTATGATGGCTGCCTGTGCGGCTCAAGGAACTGCC
AATATTTCCCAGGGTACCCGCGATGCCTTTGAACAGTTGAAGACTGCTGT
TATGAACTCTGACAACACTAACGTAGCCTTCCAGGCTGCTCGTAATGCGT
TCCCTGCTTTGAGGAACTGGTTAATTGCAAACCTTGGTGAAACTGGTCCC
CTCAACGCGGAAGCTATCGATTCCTTGATTACTACTGTTGATAGGTCTAT
TCGTCCGTCTGTTGGCGAGGTTATCACGGATCGCACCATTCATCTTCTTC
GTACCGCTTTGAAAGATCAGGCTGTCGTAGACATCCTACGCAAGATCCCT
TGGAACATGGACATTCCTGTCGAGATGGAGGCCGAGTTCAATTCTGCGTT
TTATGCGCCGGATAATGAAATGCCATTCCAAACTCATGTCAACGTTGAAT
GTGACAATTGTGATGTTTGTCCGATTGTGGGTGTTCGTTATCAGGCCACC
AACCGTGCAAACTATGATCTCTGCAGCAAATGTTACGAGGATCCCGCTGT
GTCAAAGGAAGGCATCGAGTTCAAGAAACTCACTTACATTTGGGAAGCTA
GTCTTGGCGATGCCACGGCACCCGCCGCTCCGCTTTCCCTTCGCTCACGC
GGTCCAAGTGTCGCGTTTCTTCAGAAATTGCTCACTGATCTTGGTTATAT
GAATGAGTCTATGTATCGTCGTGTGGTTGGGATGTACGGCCCTCGTACGC
GTGCTGCTGTTTCGCAGTTCCAGCGTGAGTATGGCTTGGAGGGAAATGCT
CAGCTTGGTGTCTACGATGATATTACTGCTGCCAGTCTGGCCTCCATGCT
GGAGGCTCAGATTCCCCCGActgctgccacgggtggtgctactgctactg
ctcctgctCAGGATACCAGTCAGGTTCCGCCGACGAGCACCCCCGATCCG
TCTCCTGCCCAGGGTTAG

protein sequence of Gcaud740.t1

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MGGMGGVGGMGGVGGMGGWGGWGGWGGMGLGPIFSALYPMMAACAAQGTA
NISQGTRDAFEQLKTAVMNSDNTNVAFQAARNAFPALRNWLIANLGETGP
LNAEAIDSLITTVDRSIRPSVGEVITDRTIHLLRTALKDQAVVDILRKIP
WNMDIPVEMEAEFNSAFYAPDNEMPFQTHVNVECDNCDVCPIVGVRYQAT
NRANYDLCSKCYEDPAVSKEGIEFKKLTYIWEASLGDATAPAAPLSLRSR
GPSVAFLQKLLTDLGYMNESMYRRVVGMYGPRTRAAVSQFQREYGLEGNA
QLGVYDDITAASLASMLEAQIPPTAATGGATATAPAQDTSQVPPTSTPDP
SPAQG*

mRNA from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+ (Gracilaria caudata M_176_S67 male)
ATGGGAGGAATGGGAGGAGTAGGCGGAATGGGAGGAGTAGGCGGAATGGG
AGGTTGGGGAGGATGGGGAGGATGGGGAGGTATGGGCCTGGGTCCCATCT
TTTCCGCCTTGTATCCTATGATGGCTGCCTGTGCGGCTCAAGGAACTGCC
AATATTTCCCAGGGTACCCGCGATGCCTTTGAACAGTTGAAGACTGCTGT
TATGAACTCTGACAACACTAACGTAGCCTTCCAGGCTGCTCGTAATGCGT
TCCCTGCTTTGAGGAACTGGTTAATTGCAAACCTTGGTGAAACTGGTCCC
CTCAACGCGGAAGCTATCGATTCCTTGATTACTACTGTTGATAGGTCTAT
TCGTCCGTCTGTTGGCGAGGTTATCACGGATCGCACCATTCATCTTCTTC
GTACCGCTTTGAAAGATCAGGCTGTCGTAGACATCCTACGCAAGATCCCT
TGGAACATGGACATTCCTGTCGAGATGGAGGCCGAGTTCAATTCTGCGTT
TTATGCGCCGGATAATGAAATGCCATTCCAAACTCATGTCAACGTTGAAT
GTGACAATTGTGATGTTTGTCCGATTGTGGGTGTTCGTTATCAGGCCACC
AACCGTGCAAACTATGATCTCTGCAGCAAATGTTACGAGGATCCCGCTGT
GTCAAAGGAAGGCATCGAGTTCAAGAAACTCACTTACATTTGGGAAGCTA
GTCTTGGCGATGCCACGGCACCCGCCGCTCCGCTTTCCCTTCGCTCACGC
GGTCCAAGTGTCGCGTTTCTTCAGAAATTGCTCACTGATCTTGGTTATAT
GAATGAGTCTATGTATCGTCGTGTGGTTGGGATGTACGGCCCTCGTACGC
GTGCTGCTGTTTCGCAGTTCCAGCGTGAGTATGGCTTGGAGGGAAATGCT
CAGCTTGGTGTCTACGATGATATTACTGCTGCCAGTCTGGCCTCCATGCT
GGAGGCTCAGATTCCCCCGActgctgccacgggtggtgctactgctactg
ctcctgctCAGGATACCAGTCAGGTTCCGCCGACGAGCACCCCCGATCCG
TCTCCTGCCCAGGGTTAG

Coding sequence (CDS) from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+

>Gcaud740.t1 ID=Gcaud740.t1|Name=Gcaud740.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:5082..6149+ (Gracilaria caudata M_176_S67 male)
ATGGGAGGAATGGGAGGAGTAGGCGGAATGGGAGGAGTAGGCGGAATGGG
AGGTTGGGGAGGATGGGGAGGATGGGGAGGTATGGGCCTGGGTCCCATCT
TTTCCGCCTTGTATCCTATGATGGCTGCCTGTGCGGCTCAAGGAACTGCC
AATATTTCCCAGGGTACCCGCGATGCCTTTGAACAGTTGAAGACTGCTGT
TATGAACTCTGACAACACTAACGTAGCCTTCCAGGCTGCTCGTAATGCGT
TCCCTGCTTTGAGGAACTGGTTAATTGCAAACCTTGGTGAAACTGGTCCC
CTCAACGCGGAAGCTATCGATTCCTTGATTACTACTGTTGATAGGTCTAT
TCGTCCGTCTGTTGGCGAGGTTATCACGGATCGCACCATTCATCTTCTTC
GTACCGCTTTGAAAGATCAGGCTGTCGTAGACATCCTACGCAAGATCCCT
TGGAACATGGACATTCCTGTCGAGATGGAGGCCGAGTTCAATTCTGCGTT
TTATGCGCCGGATAATGAAATGCCATTCCAAACTCATGTCAACGTTGAAT
GTGACAATTGTGATGTTTGTCCGATTGTGGGTGTTCGTTATCAGGCCACC
AACCGTGCAAACTATGATCTCTGCAGCAAATGTTACGAGGATCCCGCTGT
GTCAAAGGAAGGCATCGAGTTCAAGAAACTCACTTACATTTGGGAAGCTA
GTCTTGGCGATGCCACGGCACCCGCCGCTCCGCTTTCCCTTCGCTCACGC
GGTCCAAGTGTCGCGTTTCTTCAGAAATTGCTCACTGATCTTGGTTATAT
GAATGAGTCTATGTATCGTCGTGTGGTTGGGATGTACGGCCCTCGTACGC
GTGCTGCTGTTTCGCAGTTCCAGCGTGAGTATGGCTTGGAGGGAAATGCT
CAGCTTGGTGTCTACGATGATATTACTGCTGCCAGTCTGGCCTCCATGCT
GGAGGCTCAGATTCCCCCGActgctgccacgggtggtgctactgctactg
ctcctgctCAGGATACCAGTCAGGTTCCGCCGACGAGCACCCCCGATCCG
TCTCCTGCCCAGGGTTAG