Gcaud7340.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7340.t1
Unique NameGcaud7340.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Homology
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BLAST of Gcaud7340.t1 vs. uniprot
Match: A0A2V3J376_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J376_9FLOR)

HSP 1 Score: 94.0 bits (232), Expect = 6.740e-20
Identity = 73/233 (31.33%), Postives = 98/233 (42.06%), Query Frame = 0 
Query:   13 FALCLLTVSA---SSAQRDRPEFAQLVNPNAAT-TQTMLVICTPHEGCYSQRGDAMICTGVDIVEKTVFLRTIAYPPRYDEYFVAQQFGLPSSFINAANFHAVLNNGXXXXXXXXXXXXXXXXXXXXQQPPDQQLGIDAFGSSSQTPPPDQXXXXXXXXXXXNGGTVRDAQPFDFEMPLSVKQFAMR--NGVGLGVGGTPPGQAPPPPDPVCRIQLVAAFGNPFGVCCGPCRF 239
            F LC+   +    ++A   R   A+   P   T + +MLVIC+P EGC+SQ GD+M C GVD+  + VFLRT+        Y+V QQF LP+S   A NF  V++                       QP           ++    PP               G V  AQP   + P           NG      G           PVCR  ++AAFG+PFG+CCGPCR+
Sbjct:    6 FVLCVAVFAQHILANATGGRERRARPTIPTGETKSNSMLVICSPDEGCFSQYGDSMNCDGVDVTHRVVFLRTVENRGESGAYYVYQQFSLPNSLFRARNFGKVIDEVNAQANPAPEGNVASAPGAQPAQP--------VVAAAQPVSPP-------TLVTVARTGLV--AQPIT-QAPSXXXXXXXPPFNGGAEAFTGVQ--------RPVCRFLVIAAFGSPFGLCCGPCRY 212
The following BLAST results are available for this feature:
BLAST of Gcaud7340.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J376_9FLOR6.740e-2031.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..169
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4090_length_2594_cov_3.260487contigNODE_4090_length_2594_cov_3.260487:1548..2267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7340.t1Gcaud7340.t1Gracilaria caudata M_176_S67 malemRNANODE_4090_length_2594_cov_3.260487 1548..2267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MTRCDRTLVALVFALCLLTVSASSAQRDRPEFAQLVNPNAATTQTMLVIC
TPHEGCYSQRGDAMICTGVDIVEKTVFLRTIAYPPRYDEYFVAQQFGLPS
SFINAANFHAVLNNGNGQGNGNGNGNGNGNGNGNGQQPPDQQLGIDAFGS
SSQTPPPDQPSQQLGLNAFGNGGTVRDAQPFDFEMPLSVKQFAMRNGVGL
GVGGTPPGQAPPPPDPVCRIQLVAAFGNPFGVCCGPCRF*
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