Gcaud7340.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7340.t1
Unique Name	Gcaud7340.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	240

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4090_length_2594_cov_3.260487	contig	NODE_4090_length_2594_cov_3.260487:1548..2267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7340	Gcaud7340	Gracilaria caudata M_176_S67 male	gene	NODE_4090_length_2594_cov_3.260487 1548..2267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7340.t1.start1	Gcaud7340.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4090_length_2594_cov_3.260487 1548..1550 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7340.t1.CDS1	Gcaud7340.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4090_length_2594_cov_3.260487 1548..2267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7340.t1.exon1	Gcaud7340.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4090_length_2594_cov_3.260487 1548..2267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7340.t1.stop1	Gcaud7340.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4090_length_2594_cov_3.260487 2265..2267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7340.t1	Gcaud7340.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4090_length_2594_cov_3.260487 1548..2267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+
coding sequence from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+

mRNA sequence

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MTRCDRTLVALVFALCLLTVSASSAQRDRPEFAQLVNPNAATTQTMLVIC
TPHEGCYSQRGDAMICTGVDIVEKTVFLRTIAYPPRYDEYFVAQQFGLPS
SFINAANFHAVLNNGNGQGNGNGNGNGNGNGNGNGQQPPDQQLGIDAFGS
SSQTPPPDQPSQQLGLNAFGNGGTVRDAQPFDFEMPLSVKQFAMRNGVGL
GVGGTPPGQAPPPPDPVCRIQLVAAFGNPFGVCCGPCRF*

spliced messenger RNA

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCTGCGATCGAACTTTGGTGGCGCTTGTGTTTGCGCTCTGTTT
GTTGACTGTGTCTGCTTCGTCGGCGCAGAGGGATCGACCTGAGTTTGCGC
AGCTGGTGAATCCTAATGCCGCTACCACGCAGACGATGCTTGTTATCTGC
ACGCCCCATGAAGGATGTTACTCTCAACGGGGGGATGCCATGATCTGCAC
GGGCGTCGATATCGTCGAGAAGACGGTGTTCTTGAGAACGATTGCTTACC
CTCCTCGGTACGACGAGTATTTTGTGGCGCAGCAGTTTGGCTTGCCCTCC
TCGTTTATCAACGCCGCCAACTTTCACGCTGTGCTGAAcaacggaaatgg
acaagggaacggcaatggcaatggcaacggcaatggtaatggtaacggca
acggacagcagccgcccgaccaacaactcggtattgatgcattTGGCTCA
TCATCGCAAACGCCGCCGCCCGACCAACCATCACAGCAGTTGGGCCTCAA
CGCATTCGGCAACGGCGGAACAGTTCGAGACGCGCAACCGTTTGACTTTG
AGATGCCGCTCAGTGTGAAGCAGTTCGCCATGCGCAACGGCGTCGGCCTC
GGGGTAGGCGGTACTCCACCAGGTCAAGCACCGCCGCCTCCAGACCCCGT
GTGCCGCATTCAACTGGTGGCCGCGTTTGGAAATCCCTTCGGCGTGTGCT
GCGGACCGTGTCGGTTCTGA

protein sequence of Gcaud7340.t1

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MTRCDRTLVALVFALCLLTVSASSAQRDRPEFAQLVNPNAATTQTMLVIC
TPHEGCYSQRGDAMICTGVDIVEKTVFLRTIAYPPRYDEYFVAQQFGLPS
SFINAANFHAVLNNGNGQGNGNGNGNGNGNGNGNGQQPPDQQLGIDAFGS
SSQTPPPDQPSQQLGLNAFGNGGTVRDAQPFDFEMPLSVKQFAMRNGVGL
GVGGTPPGQAPPPPDPVCRIQLVAAFGNPFGVCCGPCRF*

mRNA from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+ (Gracilaria caudata M_176_S67 male)
ATGACTCGCTGCGATCGAACTTTGGTGGCGCTTGTGTTTGCGCTCTGTTT
GTTGACTGTGTCTGCTTCGTCGGCGCAGAGGGATCGACCTGAGTTTGCGC
AGCTGGTGAATCCTAATGCCGCTACCACGCAGACGATGCTTGTTATCTGC
ACGCCCCATGAAGGATGTTACTCTCAACGGGGGGATGCCATGATCTGCAC
GGGCGTCGATATCGTCGAGAAGACGGTGTTCTTGAGAACGATTGCTTACC
CTCCTCGGTACGACGAGTATTTTGTGGCGCAGCAGTTTGGCTTGCCCTCC
TCGTTTATCAACGCCGCCAACTTTCACGCTGTGCTGAAcaacggaaatgg
acaagggaacggcaatggcaatggcaacggcaatggtaatggtaacggca
acggacagcagccgcccgaccaacaactcggtattgatgcattTGGCTCA
TCATCGCAAACGCCGCCGCCCGACCAACCATCACAGCAGTTGGGCCTCAA
CGCATTCGGCAACGGCGGAACAGTTCGAGACGCGCAACCGTTTGACTTTG
AGATGCCGCTCAGTGTGAAGCAGTTCGCCATGCGCAACGGCGTCGGCCTC
GGGGTAGGCGGTACTCCACCAGGTCAAGCACCGCCGCCTCCAGACCCCGT
GTGCCGCATTCAACTGGTGGCCGCGTTTGGAAATCCCTTCGGCGTGTGCT
GCGGACCGTGTCGGTTCTGA

Coding sequence (CDS) from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+

>Gcaud7340.t1 ID=Gcaud7340.t1|Name=Gcaud7340.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_4090_length_2594_cov_3.260487:1548..2267+ (Gracilaria caudata M_176_S67 male)
ATGACTCGCTGCGATCGAACTTTGGTGGCGCTTGTGTTTGCGCTCTGTTT
GTTGACTGTGTCTGCTTCGTCGGCGCAGAGGGATCGACCTGAGTTTGCGC
AGCTGGTGAATCCTAATGCCGCTACCACGCAGACGATGCTTGTTATCTGC
ACGCCCCATGAAGGATGTTACTCTCAACGGGGGGATGCCATGATCTGCAC
GGGCGTCGATATCGTCGAGAAGACGGTGTTCTTGAGAACGATTGCTTACC
CTCCTCGGTACGACGAGTATTTTGTGGCGCAGCAGTTTGGCTTGCCCTCC
TCGTTTATCAACGCCGCCAACTTTCACGCTGTGCTGAAcaacggaaatgg
acaagggaacggcaatggcaatggcaacggcaatggtaatggtaacggca
acggacagcagccgcccgaccaacaactcggtattgatgcattTGGCTCA
TCATCGCAAACGCCGCCGCCCGACCAACCATCACAGCAGTTGGGCCTCAA
CGCATTCGGCAACGGCGGAACAGTTCGAGACGCGCAACCGTTTGACTTTG
AGATGCCGCTCAGTGTGAAGCAGTTCGCCATGCGCAACGGCGTCGGCCTC
GGGGTAGGCGGTACTCCACCAGGTCAAGCACCGCCGCCTCCAGACCCCGT
GTGCCGCATTCAACTGGTGGCCGCGTTTGGAAATCCCTTCGGCGTGTGCT
GCGGACCGTGTCGGTTCTGA