Gcaud7330.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7330.t1
Unique Name	Gcaud7330.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	527

Homology

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BLAST of Gcaud7330.t1 vs. uniprot
Match: A0A2V3IN04_9FLOR (AMPK1_CBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN04_9FLOR)

HSP 1 Score: 825 bits (2130), Expect = 4.190e-298
Identity = 415/519 (79.96%), Postives = 447/519 (86.13%), Query Frame = 0

Query:    1 MLGRRAAVRRNKLFRDRGEAQIPLSLPAAPDRFQTAIPFVQPIPIDSNVSTTFVWPDPQHQHSSVVLVASFDAYLHHRMRPSLSHPRKFTITLRVPPGSHTYKFLVDGLWSTCLALHSQHPIETTDDGVKHHRLVVEAPTHSQATATPQVVTGRIHDSIGVPRSTAVLRSASASAVLPIQQRADPTLPANAFQPQTSSVSHQDTARHKVEVAPRGSSFTSPPPFGGISHMKAITRKSLLQRVGSGWLKRFSGRV-DSDGEFGCSFSMSQTQFFARDRSGSGLFRGSRDRVSLFPSASEPSVGRCATDEKENSFSANRFSAFGNGSDRGHSKRHTLRGSNRGT-VKISRPTKVDEPKDMDEVNRQADNWRQMARHLQDDLCDPTGARELFTKAIQHREKHGLWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNDIDAGKEHIADLMLYVGVVVDRQKRRAEAEELYRKALNMYKEYGIVGNNVEIAVKNLSLNLRKQNREHEIEAIRVEYGSV 517
            MLGRRAA RRN+L RDRGEAQI LS PA PDRFQTA+ +      D NV TTF+WPDP HQ S+VVLVASFDA+LHHRMRP+ SHPR FTITLRV PGSHTYKFLVDG+WSTCLALH QHPIE TDDGVKHHRLVV  P   Q    P+VV   +HD+   P STAV RSASASAV PIQQRA+ TLPAN FQPQ S+VSHQ+T RHKVEVAPRGSSF SPPP GGISHMKAI RKSLLQRVGSGWL+RFSGRV + D E+GCSFSM+QTQF +RDRSGSGLFRGSRDRVSLFPSASEPSVGRC TD+KENSF+ NRF+ FG   D+ HSKR T RGSNRG  VKISRP KV+EPKD+DEVNRQADNWRQMARHLQDDLCDPTGARELF KAIQHREKHGLWCTSQNAQVHVDLARNLSK DRMKDAELHLRL L+IYN IDAGKEH+ADLMLYVGVVVDRQKRRAEAEELYRKALN+YKE  I  NNVEIAVKNLSLNLRKQNREHEIEA+R++Y  +
Sbjct:    1 MLGRRAAARRNRLLRDRGEAQISLSPPAQPDRFQTALQYAAAAQTDGNVPTTFIWPDPHHQRSNVVLVASFDAHLHHRMRPTPSHPRNFTITLRVAPGSHTYKFLVDGVWSTCLALHDQHPIEVTDDGVKHHRLVVSPPGRLQRAGQPKVVPAHLHDNAVNPHSTAVFRSASASAVPPIQQRAEATLPANVFQPQASTVSHQETGRHKVEVAPRGSSFNSPPPVGGISHMKAINRKSLLQRVGSGWLRRFSGRVVEGDSEYGCSFSMTQTQFMSRDRSGSGLFRGSRDRVSLFPSASEPSVGRCPTDDKENSFAGNRFNGFGFSHDKTHSKRQTFRGSNRGAAVKISRPMKVNEPKDIDEVNRQADNWRQMARHLQDDLCDPTGARELFNKAIQHREKHGLWCTSQNAQVHVDLARNLSKADRMKDAELHLRLTLKIYNKIDAGKEHVADLMLYVGVVVDRQKRRAEAEELYRKALNIYKENDIRSNNVEIAVKNLSLNLRKQNREHEIEAVRMDYADI 519

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BLAST of Gcaud7330.t1 vs. uniprot
Match: A0A2V3J7R1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7R1_9FLOR)

HSP 1 Score: 120 bits (302), Expect = 2.930e-27
Identity = 73/174 (41.95%), Postives = 99/174 (56.90%), Query Frame = 0

Query:  339 RGTVKISRPTKVDEPKDMDEVNRQADNWRQMARHLQDDLC-DPTGARELFTKAIQHREKHGLWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNDIDA-GKEHIADLMLYVGVVVDRQKRRAEAEELYRKALNMYKEYGIVGNNVEIAVKNLSLNLRKQNREHEIEAI 510
            R   K+  PT  +  + +D     AD  R+ A  LQ  L  D  GA E F KA+  R KHGL+CT  NA  HV+ A+NLSK     +AE HLR A  IY  +DA       D++LY+ VV+DRQ R AEAE  YR AL +Y++  +  +NV + + +LS NLR Q R  E++ +
Sbjct:   96 RAAAKVVEPTISNSEEAID----YADLCRKHAASLQRCLPPDYEGAGEFFEKAVDARAKHGLFCTPDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVGIDSLSNNLRAQGRADEVDTV 265

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BLAST of Gcaud7330.t1 vs. uniprot
Match: A0A7S1T700_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T700_9RHOD)

HSP 1 Score: 103 bits (256), Expect = 4.260e-20
Identity = 75/183 (40.98%), Postives = 108/183 (59.02%), Query Frame = 0

Query:  330 KRHTLRGSNR----GTVKISRPTKVDEPKD-MDEVNRQADNWRQMARHLQDDLCDPTGARELFTKAIQHREKHGLWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNDID-AGKEHIADLMLYVGVVVDRQKR---RAEAEELYRKALNMYKEYGIVGNNVEIAVKNLSLNLRKQNR 503
            KR+T R SNR    G   IS P   +   D M++ + +A  + + A+ L     D  GA   F KA++ REK  +  + ++ +V +D A  LSK  ++K+AE+ L+ AL+I+       KE   D++LY GVV+DRQK    R+ AEE YR AL +Y+E GI  +NVEIA KNL LNLRK+ +
Sbjct:  227 KRNTARNSNRESSVGRENISLPVAEEFGMDTMEDADHKAREYVKAAKMLH-KWGDFAGAALCFEKAVECREKFTIH-SFEHTEVLLDYAHVLSKQSKLKEAEVQLQKALKIWEKAPFPRKERKGDILLYYGVVLDRQKDETLRSLAEEQYRAALKIYEEAGIKSDNVEIARKNLQLNLRKRGK 407

[Close]

BLAST of Gcaud7330.t1 vs. uniprot
Match: A0A7S1XDG6_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDG6_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 2.170e-11
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 0

Query:  383 ARELFTKAIQHREKHGLWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNDIDA------GKEHIADLMLYVGVVVDRQKRRAEAEELYRKALNMYKEYGIVGNNVEIAVKNLSLNLRK 500
            A  L+  AI+ RE++ L  +  N   H+++   L   D    AE H R+AL ++   D        K+ + DL+ ++GV +D Q++R E+E  Y+KA+  Y+EYG+ G NV+   +NL L  +K
Sbjct:  324 ALALYRIAIRLREENNLKMSPSNVFAHLEMGTTLFHLDEFSAAEQHFRIALAVWQHSDQINFVLEDKQRLGDLLQFLGVALDVQRKREESEYFYQKAIEKYEEYGVEGPNVDTCRENLELVRQK 447

The following BLAST results are available for this feature:

BLAST of Gcaud7330.t1 vs. uniprot

BLAST of Gcaud7330.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A2V3IN04_9FLOR	4.190e-298	79.96	AMPK1_CBM domain-containing protein n=1 Tax=Gracil...	[more]
A0A2V3J7R1_9FLOR	2.930e-27	41.95	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A7S1T700_9RHOD	4.260e-20	40.98	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A7S1XDG6_9RHOD	2.170e-11	33.87	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 356..376
None	No IPR available	CDD	cd02859	E_set_AMPKbeta_like_N	coord: 50..128 e-value: 5.51449E-10 score: 53.7569
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 359..514 e-value: 4.4E-11 score: 44.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 376..487
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 44..140 e-value: 2.0E-10 score: 42.4
IPR032640	AMP-activated protein kinase, glycogen-binding domain	PFAM	PF16561	AMPK1_CBM	coord: 50..131 e-value: 3.1E-8 score: 33.7
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 48..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1722_length_8807_cov_4.324002	contig	NODE_1722_length_8807_cov_4.324002:1867..3447 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7330.t1	Gcaud7330.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1722_length_8807_cov_4.324002 1867..3447 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7330.t1 ID=Gcaud7330.t1|Name=Gcaud7330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=527bp
MLGRRAAVRRNKLFRDRGEAQIPLSLPAAPDRFQTAIPFVQPIPIDSNVS
TTFVWPDPQHQHSSVVLVASFDAYLHHRMRPSLSHPRKFTITLRVPPGSH
TYKFLVDGLWSTCLALHSQHPIETTDDGVKHHRLVVEAPTHSQATATPQV
VTGRIHDSIGVPRSTAVLRSASASAVLPIQQRADPTLPANAFQPQTSSVS
HQDTARHKVEVAPRGSSFTSPPPFGGISHMKAITRKSLLQRVGSGWLKRF
SGRVDSDGEFGCSFSMSQTQFFARDRSGSGLFRGSRDRVSLFPSASEPSV
GRCATDEKENSFSANRFSAFGNGSDRGHSKRHTLRGSNRGTVKISRPTKV
DEPKDMDEVNRQADNWRQMARHLQDDLCDPTGARELFTKAIQHREKHGLW
CTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNDIDAGKEHIADLM
LYVGVVVDRQKRRAEAEELYRKALNMYKEYGIVGNNVEIAVKNLSLNLRK
QNREHEIEAIRVEYGSVKPAPVSIVV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013783	Ig-like_fold
IPR032640	AMPK1_CBM
IPR014756	Ig_E-set