Gcaud7140.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7140.t1
Unique NameGcaud7140.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length257
Homology
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A2V3IXS7_9FLOR (30S ribosomal protein S2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXS7_9FLOR)

HSP 1 Score: 416 bits (1069), Expect = 1.670e-145
Identity = 199/252 (78.97%), Postives = 224/252 (88.89%), Query Frame = 0
Query:    1 MALRNSLRIVRSFSAAASSRRGPMSYSELMASPKFASSANSIFHQYSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRARGRRLNRPSMAIPALPSTQKAR 252
            MA RNS+  +R F  +  S    +  S+L++SPKF++SANS FHQYSVQDLM+ARVHMGHRTKLWNPKMAPY+LGHRNGMH+++LD TA MLRRALIAASHMAENDCTFLWLGP+D QKSKIVEKQARKAGA+TI GARW GGTLTNPIKSNQAQRFNYRIPDCVF+VDT RHMPALREA+LCGIPTIGIVDSDCDP+ LTYPIPGNDD A AIYLYCSLM+ A+LDGRARGRRL+RPS+ IP+L S Q+AR
Sbjct:    1 MATRNSISAIRRFCTSIRSHTTQLPDSDLLSSPKFSASANSTFHQYSVQDLMNARVHMGHRTKLWNPKMAPYILGHRNGMHILNLDVTATMLRRALIAASHMAENDCTFLWLGPRDPQKSKIVEKQARKAGAYTIDGARWIGGTLTNPIKSNQAQRFNYRIPDCVFVVDTIRHMPALREARLCGIPTIGIVDSDCDPQFLTYPIPGNDDAALAIYLYCSLMKHALLDGRARGRRLSRPSVQIPSLKSAQRAR 252          
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A7J7IRC1_9RHOD (28S ribosomal protein S2, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRC1_9RHOD)

HSP 1 Score: 202 bits (515), Expect = 4.630e-62
Identity = 104/202 (51.49%), Postives = 130/202 (64.36%), Query Frame = 0
Query:   47 SVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRARGRRLNRPSMAIPALPST 248
            +++ LM A VH GHRT +WNPKM  Y+ G RNGMHVIDL +TA  LRRAL             LWLGPKD     IV  +AR+AGAFT+ G RW GGTLTNP++S Q +R   ++PD +F VD  RH  AL+EA++  IPTI ++D+DCDP+  TY +PGND+ A AI LYC+L   A LDG  R R  N P   I    S+
Sbjct:    7 TLRQLMAAGVHFGHRTTVWNPKMRSYVFGKRNGMHVIDLQQTATCLRRALEVFQAAGRAGLRQLWLGPKDPLLENIVRMRARQAGAFTLLG-RWVGGTLTNPVESRQIRRLGGQLPDLLFCVDAHRHRTALKEARIVDIPTIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG-LRERAGNLPKDTIDPAKSS 206          
BLAST of Gcaud7140.t1 vs. uniprot
Match: M1UXR0_CYAM1 (Mitochondrial ribosomal protein S2, mitochondrial n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1UXR0_CYAM1)

HSP 1 Score: 199 bits (506), Expect = 1.870e-60
Identity = 94/184 (51.09%), Postives = 122/184 (66.30%), Query Frame = 0
Query:   45 QYSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDG 228
            Q +++ L+ A VH+GH+T  WNPKM PY+ G RNGMH++DL ++A  L+RAL             LWLGPKD     IV  +AR+AGAFT+ G RW GGTLTNP+ S Q  R    +PD +F VD  RH  ALREA++  IP+I ++D+DCDP+  TY +PGND+ A AI LYC+L   A LDG
Sbjct:    5 QATLRQLLSAGVHIGHKTSAWNPKMRPYIYGERNGMHIVDLQQSAVCLKRALEVFRAAGRAGLRQLWLGPKDPFLESIVRTRARQAGAFTLSG-RWVGGTLTNPVASRQILRLGGHLPDLIFCVDAHRHRTALREARIVDIPSIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG 187          
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A7S1ETF3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETF3_9RHOD)

HSP 1 Score: 194 bits (494), Expect = 2.870e-58
Identity = 90/204 (44.12%), Postives = 138/204 (67.65%), Query Frame = 0
Query:   49 QDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAG--AFTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRARGRRLNRPSMAIPALPSTQK 250
            + LM+ARVH+GH+T++W P+MAPY+LG RNGMH+I+LD+T  +L +AL  A  ++      LWLGPK+  + K++ + A+K     FT    +W  GTLTN  K+ + + F+Y++PD +F++D   +  A+REA   GIP IGIVD+DC+PE++TYPIPGND+   A++LY SLM  A+++G       +R    IP +P+ ++
Sbjct:   18 RQLMNARVHLGHKTRIWEPRMAPYILGVRNGMHIINLDRTVVLLSQALRFARELSYRSGRILWLGPKEPIQHKVLAEIAQKTPHVLFTKEYKKWVAGTLTNAGKTEKLEEFDYKLPDALFVLDCLHNYTAIREANQVGIPVIGIVDTDCNPEIVTYPIPGNDESTRALHLYSSLMSQAMIEGSKMAHHASRGK--IPKIPTKKE 219          
BLAST of Gcaud7140.t1 vs. uniprot
Match: M2VZG4_GALSU (30S ribosomal protein S2 (Plastid) isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZG4_GALSU)

HSP 1 Score: 193 bits (491), Expect = 2.100e-57
Identity = 94/198 (47.47%), Postives = 133/198 (67.17%), Query Frame = 0
Query:   44 HQYSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRA--RGRRLNRPS 239
            + ++++ LM  RVHMGH T+ WNPKM  Y+LG RNG+H+I+L+ T   LRRAL     M   D   LWL PK  + + +  K A +  AF + G RW  GTLTNP+ S QA++F Y++PD +F +D   H  AL+EA++ G+P++GIVD+DCDP  +TYPIPGND+ A AI LYC L+  A+ +GR+  +GR   +P+
Sbjct:   71 YAFTLEQLMQCRVHMGHVTEKWNPKMGRYILGERNGIHIINLEYTWTHLRRALRVIREMVALDGFVLWLPPKRNELASVARKIAEQGEAFMLDG-RWIPGTLTNPLGSGQAKKFRYKLPDMLFCLDCRFHTVALKEAQMTGVPSVGIVDTDCDPGQVTYPIPGNDESALAISLYCQLVVHAVGEGRSLSKGRMEIKPN 267          
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A5J4Z1M7_PORPP (30S ribosomal protein S2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1M7_PORPP)

HSP 1 Score: 165 bits (418), Expect = 2.580e-45
Identity = 77/185 (41.62%), Postives = 117/185 (63.24%), Query Frame = 0
Query:   52 MDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKD-VQKSKIVEKQARKAGA-FTIGGARWTGGTLTNPIKSNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRARGRR 234
            MDARVH+GH+T++WNP+MAP++LG RNGMH+I+LDKT  ++  AL  A  +  +     WLGP++  Q   +V    R  GA F     RW GG  TN  +    QRF  ++PD +F++D  ++  A+ EA +  +  I ++D+DCDP+ + YPIPGND+ + A++LY S+M  A+ +G    R+
Sbjct:   14 MDARVHLGHKTRVWNPRMAPFILGVRNGMHIINLDKTVVLMADALRFARELTASGGRIYWLGPREETQHDMLVSIAERTPGAIFQRKSKRWIGGMFTNAAQMGTLQRFGNKLPDALFVMDARKNRVAIAEANVMSMQVIAVLDTDCDPKEVQYPIPGNDESSLALHLYMSMMSHAMTEGHLLYRK 198          
BLAST of Gcaud7140.t1 vs. uniprot
Match: RS2_RHIL3 (30S ribosomal protein S2 n=217 Tax=Proteobacteria TaxID=1224 RepID=RS2_RHIL3)

HSP 1 Score: 158 bits (400), Expect = 4.140e-44
Identity = 92/250 (36.80%), Postives = 132/250 (52.80%), Query Frame = 0
Query:   46 YSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTN---------------PIKSNQAQRFNYR------------------------IPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRAR-----GRRLNRPSMAIPALPSTQKA 251
            +S++ L++A VH GH+T  WNPKM PY+ G RN +H+IDL +T  ML RAL   S         L++G K  Q S+I+   A+++  + +  +RW GG +TN                I + +AQ F  +                         PD +FI+DT +   A+ EAK  GIP + I+DS+CDP+L+ YPIPGNDD + AI LYC L+  A +DG AR     GR L   S  +P  P+ ++A
Sbjct:    6 FSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKR-QASEIIADSAKRSAQYYVN-SRWLGGMMTNWKTISNSIQRLRKLDEILNGEAQGFTKKERLNLEREREKLDKALGGIRDMGGTPDLMFIIDTNKEKIAIDEAKRLGIPVVAIIDSNCDPDLIDYPIPGNDDASRAIALYCELISRAAIDGIARQQGSSGRDLG-ASSEVPVEPALEEA 252          
BLAST of Gcaud7140.t1 vs. uniprot
Match: UPI001AE550F6 (30S ribosomal protein S2 n=2 Tax=Aurantimonadaceae TaxID=255475 RepID=UPI001AE550F6)

HSP 1 Score: 158 bits (400), Expect = 5.910e-44
Identity = 88/225 (39.11%), Postives = 121/225 (53.78%), Query Frame = 0
Query:   46 YSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTN---------------PIKSNQAQRFNYR------------------------IPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRAR 231
            YS++ L++A VH GH+T  WNPKMAPY+ G RN +H++DL +T  ML RAL A S         L++G K  Q S+IV   A ++  + +  ARW GG LTN                + +  AQ F  +                        +PD +FI+DT +   A+ EAK  GIP + +VDS+C+P+ + YPIPGNDD A AI LYC L+  A +DG AR
Sbjct:    6 YSMRQLLEAGVHFGHQTHRWNPKMAPYIFGARNNIHILDLAQTVPMLHRALQAVSDSVARGGRVLFVGTKR-QASEIVADAANRSAQYYVN-ARWLGGMLTNWKTISNSIQRLRKLDELLAGDAQGFTKKERLTLQRERDKLDRALGGIKDMGGVPDMIFIIDTNKESIAIEEAKRLGIPVVAVVDSNCNPDPIDYPIPGNDDAARAISLYCDLIARAAVDGIAR 228          
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A0D5LSB9_9HYPH (30S ribosomal protein S2 n=13 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0D5LSB9_9HYPH)

HSP 1 Score: 158 bits (399), Expect = 8.570e-44
Identity = 86/225 (38.22%), Postives = 123/225 (54.67%), Query Frame = 0
Query:   46 YSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTN---------------PIKSNQAQRFNYR------------------------IPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRAR 231
            ++++ L++A VH GH+T  WNPKM PY+ G RN +H+IDL +T  ML RAL   S     +   L +G K  Q S+IV + A+++  + +  +RW GG LTN                I +N+AQ F  +                        +PD +FI+DT +   A+ EAK  GIP + +VDS+CDP+ + YPIPGNDD + AI LYC L+  A +DG AR
Sbjct:    6 FTMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARNGRVLMVGTKR-QASEIVAESAQRSAQYYVN-SRWLGGMLTNWRTISNSIQRLRKLDEILANEAQGFTKKERLNLDREREKLDRALGGIRDMGGVPDLIFIIDTNKEKIAIEEAKRLGIPVVAVVDSNCDPDEVDYPIPGNDDASRAISLYCDLISRAAIDGIAR 228          
BLAST of Gcaud7140.t1 vs. uniprot
Match: A0A562CNY3_9HYPH (30S ribosomal protein S2 n=1 Tax=Mesorhizobium sp. J18 TaxID=935263 RepID=A0A562CNY3_9HYPH)

HSP 1 Score: 157 bits (398), Expect = 1.540e-43
Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 0
Query:   46 YSVQDLMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAASHMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTN---------------PIKSNQAQRFNYR------------------------IPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDGAHAIYLYCSLMRLAILDGRAR 231
            +S++ L++A VH GH+T  WNPKMAPY+ G RN +HVIDL +T  +L +AL A S         L++G K  Q S+IV   A+++  + +  ARW GG LTN                + + +AQ F  +                         PD +F++DT +   A++EAK  GIP + I+DS+CDP+ + YPIPGNDD A AI LYC L+  A +DG AR
Sbjct:    6 FSMRQLLEAGVHFGHQTHRWNPKMAPYIFGARNNIHVIDLSQTVPLLEQALRAVSDTVSKGGRLLFVGTKR-QASEIVADAAQRSAQYYVN-ARWLGGMLTNWKTISNSIQRLRKLDELLAGEAQGFTKKERLNLERERAKLDRALGGIKDMGSTPDMMFVIDTNKEAIAVQEAKRLGIPVVAIIDSNCDPDPIDYPIPGNDDAARAISLYCDLIARAAIDGIAR 228          
The following BLAST results are available for this feature:
BLAST of Gcaud7140.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXS7_9FLOR1.670e-14578.9730S ribosomal protein S2 n=1 Tax=Gracilariopsis ch... [more]
A0A7J7IRC1_9RHOD4.630e-6251.4928S ribosomal protein S2, mitochondrial n=1 Tax=Cy... [more]
M1UXR0_CYAM11.870e-6051.09Mitochondrial ribosomal protein S2, mitochondrial ... [more]
A0A7S1ETF3_9RHOD2.870e-5844.12Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2VZG4_GALSU2.100e-5747.4730S ribosomal protein S2 (Plastid) isoform 1 n=2 T... [more]
A0A5J4Z1M7_PORPP2.580e-4541.6230S ribosomal protein S2 n=1 Tax=Porphyridium purp... [more]
RS2_RHIL34.140e-4436.8030S ribosomal protein S2 n=217 Tax=Proteobacteria ... [more]
UPI001AE550F65.910e-4439.1130S ribosomal protein S2 n=2 Tax=Aurantimonadaceae... [more]
A0A0D5LSB9_9HYPH8.570e-4438.2230S ribosomal protein S2 n=13 Tax=Hyphomicrobiales... [more]
A0A562CNY3_9HYPH1.540e-4338.6730S ribosomal protein S2 n=1 Tax=Mesorhizobium sp.... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 179..190
score: 46.79
coord: 48..66
score: 34.98
coord: 79..88
score: 50.31
coord: 200..214
score: 43.69
coord: 162..179
score: 32.82
coord: 131..148
score: 36.41
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 159..228
e-value: 3.9E-22
score: 78.6
coord: 51..148
e-value: 7.9E-29
score: 100.4
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 51..226
e-value: 1.79111E-70
score: 212.827
NoneNo IPR availableGENE3D3.40.50.10490coord: 49..250
e-value: 3.0E-60
score: 204.7
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 47..147
e-value: 6.7E-26
score: 88.9
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 44..228
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 44..229
score: 19.798965
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 48..59
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 48..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_26_length_75114_cov_4.470882contigNODE_26_length_75114_cov_4.470882:51023..51793 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7140.t1Gcaud7140.t1Gracilaria caudata M_176_S67 malemRNANODE_26_length_75114_cov_4.470882 51023..51793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7140.t1 ID=Gcaud7140.t1|Name=Gcaud7140.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MALRNSLRIVRSFSAAASSRRGPMSYSELMASPKFASSANSIFHQYSVQD
LMDARVHMGHRTKLWNPKMAPYLLGHRNGMHVIDLDKTADMLRRALIAAS
HMAENDCTFLWLGPKDVQKSKIVEKQARKAGAFTIGGARWTGGTLTNPIK
SNQAQRFNYRIPDCVFIVDTTRHMPALREAKLCGIPTIGIVDSDCDPELL
TYPIPGNDDGAHAIYLYCSLMRLAILDGRARGRRLNRPSMAIPALPSTQK
ARGWSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom_sf