Gcaud3864.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3864.t2
Unique NameGcaud3864.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Homology
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A2V3J7B9_9FLOR (Eukaryotic translation initiation factor 4E type 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7B9_9FLOR)

HSP 1 Score: 285 bits (728), Expect = 3.550e-96
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0
Query:    1 MAATGKSWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSI 140
            MAATGKSWLAAAAAPVRTQPKG HLLHRTYQFSYVHRSMDRKNEDYKNQI+NIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACS+
Sbjct:    1 MAATGKSWLAAAAAPVRTQPKGGHLLHRTYQFSYVHRSMDRKNEDYKNQIKNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSV 140          
BLAST of Gcaud3864.t2 vs. uniprot
Match: R7QML7_CHOCR (Translation initiation factor eIF4, subunit E, type 2 (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QML7_CHOCR)

HSP 1 Score: 194 bits (494), Expect = 1.530e-60
Identity = 97/138 (70.29%), Postives = 112/138 (81.16%), Query Frame = 0
Query:    7 SWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSIVLRD 144
            S LAA  AP    P G HLLHRTY FSYV R+ ++K E+Y  QI+ IA V TVEEFW VYTHL RV+KL P TDY+LFQ+GVQPMWEDDANKRGGRL +R+QK ASPRAFEDLCLA+IGEQF+TDDICGIACS+  ++
Sbjct:   28 SALAAKNAPPSV-PAG-HLLHRTYHFSYVRRTFEKKAENYGAQIKRIAAVATVEEFWGVYTHLQRVSKLPPMTDYYLFQEGVQPMWEDDANKRGGRLLLRVQKHASPRAFEDLCLAVIGEQFDTDDICGIACSVRFQE 163          
BLAST of Gcaud3864.t2 vs. uniprot
Match: L8H0E9_ACACA (Eukaryotic initiation factor 4E n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0E9_ACACA)

HSP 1 Score: 132 bits (333), Expect = 1.240e-35
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 0
Query:   15 PVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI-----VLRDWSFKAHN 151
            P    P+G H L   Y F +V RS  R  E+Y N I+ I    ++E FW  Y HL R + L   +DY LF++G++PMWEDDANKRGG+  IRL+K  + + +EDL LA++GEQF+  D+ICGI CSI     +L  W+  A N
Sbjct:   55 PAGVDPEGGHFLSSGYTFWFVRRSGARSQENYANAIKRIGGFRSIEGFWKYYNHLVRPHDLPNTSDYHLFKEGIKPMWEDDANKRGGKWIIRLKKGLATKYWEDLLLAIVGEQFQVGDEICGIVCSIRFNEDILSVWNKSADN 197          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A7S0BL84_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL84_9RHOD)

HSP 1 Score: 127 bits (318), Expect = 7.300e-34
Identity = 58/123 (47.15%), Postives = 86/123 (69.92%), Query Frame = 0
Query:   19 QPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQF-ETDDICGIACSI 140
            +P G H L+  + FS++ RS   +NE Y + I+ I + G+VE+FW+ YTHL R N L  NTDY++F++ ++P+WED  NK GGR TIRL+K  + RAFED+ + L+GEQF E + + G+A S+
Sbjct:   16 RPVGRHQLNSRFHFSFMKRSATSRNETYGSSIKEIGSFGSVEDFWSFYTHLTRPNDLPVNTDYYVFREPIKPLWEDPENKHGGRWTIRLKKGIANRAFEDMSICLMGEQFDEYETVNGLALSV 138          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A1X2G7J4_9FUNG (Eukaryotic translation initiation factor 4E n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7J4_9FUNG)

HSP 1 Score: 126 bits (316), Expect = 1.270e-33
Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   16 VRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI-----VLRDWSFKAHN 151
            ++ QP   H LH  +   ++HRS   K  +Y++ +R IA+  TVEEFW+VYTHL R N+L   +DY LF+ G++PMWED AN +GG+  +RL+K  + R +EDL LA+IG+QF+  ++ICG   SI     ++  W+  A+N
Sbjct:    8 LQQQPMPQHALHYAWIVWFIHRSPRTKITNYEDSMRKIASFSTVEEFWSVYTHLTRPNELPAISDYHLFKNGIRPMWEDPANVQGGKWIVRLKKGLASRYWEDLVLAMIGDQFDVHNEICGAVLSIRNSEDIISIWNKSANN 149          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A8H7ENZ2_9FUNG (Eukaryotic translation initiation factor 4E type 2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ENZ2_9FUNG)

HSP 1 Score: 122 bits (307), Expect = 4.190e-32
Identity = 61/140 (43.57%), Postives = 92/140 (65.71%), Query Frame = 0
Query:   18 TQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI-----VLRDWSFKAHN 151
            TQP   H LH  + F ++HRS   K +DY+  ++ IA+  ++EEFWAV++HL R N L   +DY LF++GV+P+WED+AN +GG+  +RL+K  + R +E L LA+IG+QF+  D+ICG   SI     ++  W+  A N
Sbjct:   25 TQPITHHPLHYAWVFWFMHRSPKEKIKDYEGSMKRIASFTSIEEFWAVFSHLRRPNDLPYISDYHLFKQGVRPVWEDEANMQGGKWIVRLKKGLASRYWESLVLAIIGDQFDVHDEICGAVLSIRASEDIISVWNRTAAN 164          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A068RRF4_9FUNG (Eukaryotic translation initiation factor 4e type2 isoform 3 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RRF4_9FUNG)

HSP 1 Score: 122 bits (305), Expect = 5.610e-32
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 0
Query:   10 AAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI-----VLRDWSFKAHN 151
            AA AA V T     H L  T+ F ++HR    K +DY+  ++ IA+  TVEEFWAVY+HL R + L   +DY LF++GV+P+WEDDAN RGG+  +RL+K  + R +E L LA++GEQF+  D+ICG   SI     ++  W+  A N
Sbjct:    6 AAPAASVGTH----HPLSSTWVFWFMHRMPKAKIKDYEGSMKRIASFSTVEEFWAVYSHLRRPSDLPTISDYHLFKQGVRPVWEDDANIRGGKWIVRLKKGLASRYWEQLLLAIVGEQFDVGDEICGAVLSIRSSEDIISVWNKTAAN 149          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A168S309_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168S309_ABSGL)

HSP 1 Score: 120 bits (301), Expect = 2.570e-31
Identity = 61/135 (45.19%), Postives = 93/135 (68.89%), Query Frame = 0
Query:    7 SWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI 140
            S L+A ++P+     G H LH ++ F ++HRS   K  +Y+ Q++ IAT  T+EEFWAVY+H+NR + L   +DY LF+ GV+PMWED AN +GG+  +R++K  + R +E+L +A+IG+QF+  D+ICG   SI
Sbjct:    5 SSLSATSSPMDRVNDG-HPLHYSWVFWFMHRSPGSKITNYEGQMKKIATFSTIEEFWAVYSHINRPHDLPAISDYHLFKHGVRPMWEDAANIQGGKWIVRVKKGLASRYWENLVMAIIGDQFDVQDEICGAVLSI 138          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A1W4XG25_AGRPL (eIF-4F 25 kDa subunit n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XG25_AGRPL)

HSP 1 Score: 121 bits (303), Expect = 2.720e-31
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 0
Query:   20 PKGAHLLHRTYQFSY------VHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSIVLRDWSFKAHNNT 153
            P G H L  +Y   +      V  S  R  E Y   +R +  +GTVE++W +Y+HL R+  L P+TD  LF+KG+QPMWED AN RGG+  IRL+K  +PRA+E+LC+A++GEQF   ++ICG+  S+  ++      N T
Sbjct:   40 PPGEHKLQHSYCLWFSKRPPLVRSSQLRGTEGYSQILRLVGQIGTVEQWWGLYSHLVRLQDLPPHTDLHLFKKGIQPMWEDSANMRGGKWVIRLKKGYAPRAWENLCMAMLGEQFMAGNEICGVVVSVRYQEDLLSIWNRT 180          
BLAST of Gcaud3864.t2 vs. uniprot
Match: A0A1X2IQP9_9FUNG (Translation initiation factor eIF 4e-like domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IQP9_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 4.360e-31
Identity = 57/127 (44.88%), Postives = 88/127 (69.29%), Query Frame = 0
Query:   15 PVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQIRNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRGGRLTIRLQKAASPRAFEDLCLALIGEQFET-DDICGIACSI 140
            P + +    H LH ++ F ++HRS   K  +Y++Q++ IAT  ++EEFWAVY+H+NR + L   +DY LF+ GV+PMWED AN +GG+  +R++K  + R +E+L LA+IG+QF+  D+ICG   SI
Sbjct:   19 PSKDEEALQHPLHYSWVFWFMHRSPGSKITNYEDQMKRIATFSSIEEFWAVYSHINRPHDLPTISDYHLFKHGVRPMWEDAANIQGGKWIVRVKKGLASRYWENLVLAIIGDQFDVQDEICGAVLSI 145          
The following BLAST results are available for this feature:
BLAST of Gcaud3864.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J7B9_9FLOR3.550e-9697.86Eukaryotic translation initiation factor 4E type 2... [more]
R7QML7_CHOCR1.530e-6070.29Translation initiation factor eIF4, subunit E, typ... [more]
L8H0E9_ACACA1.240e-3546.15Eukaryotic initiation factor 4E n=1 Tax=Acanthamoe... [more]
A0A7S0BL84_9RHOD7.300e-3447.15Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X2G7J4_9FUNG1.270e-3343.66Eukaryotic translation initiation factor 4E n=1 Ta... [more]
A0A8H7ENZ2_9FUNG4.190e-3243.57Eukaryotic translation initiation factor 4E type 2... [more]
A0A068RRF4_9FUNG5.610e-3245.27Eukaryotic translation initiation factor 4e type2 ... [more]
A0A168S309_ABSGL2.570e-3145.19Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1W4XG25_AGRPL2.720e-3142.55eIF-4F 25 kDa subunit n=1 Tax=Agrilus planipennis ... [more]
A0A1X2IQP9_9FUNG4.360e-3144.88Translation initiation factor eIF 4e-like domain-c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001040Translation Initiation factor eIF- 4ePFAMPF01652IF4Ecoord: 26..146
e-value: 2.6E-36
score: 124.8
IPR001040Translation Initiation factor eIF- 4ePANTHERPTHR11960EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATEDcoord: 18..140
IPR023398Translation Initiation factor eIF- 4e-likeGENE3D3.30.760.10RNA Cap, Translation Initiation Factor Eif4ecoord: 9..156
e-value: 4.5E-43
score: 149.0
IPR023398Translation Initiation factor eIF- 4e-likeSUPERFAMILY55418eIF4e-likecoord: 17..140
NoneNo IPR availablePANTHERPTHR11960:SF18EUKARYOTIC TRANSLATION INITIATION FACTOR 4E HOMOLOGOUS PROTEIN, ISOFORM Bcoord: 18..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_604_length_21025_cov_4.278303contigNODE_604_length_21025_cov_4.278303:10218..10808 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2Gcaud3864.t2Gracilaria caudata M_176_S67 malemRNANODE_604_length_21025_cov_4.278303 10218..10808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MAATGKSWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQI
RNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRG
GRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSIVLRDWSFKAH
NNTDQSPSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001040TIF_eIF_4E
IPR023398TIF_eIF4e-like