Gcaud3864.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3864.t2
Unique NameGcaud3864.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_604_length_21025_cov_4.278303contigNODE_604_length_21025_cov_4.278303:10218..10808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BYB3
PFAMsIF4E
Max annot lvl4751|Fungi
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Evalue4.89e-31
EggNOG OGsCOG5053@1|root,KOG1669@2759|Eukaryota,38GD4@33154|Opisthokonta,3NWZJ@4751|Fungi,1GSJS@112252|Fungi incertae sedis
DescriptionMortierella verticillata NRRL 6337 translation initiation factor eIF-4E
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3864Gcaud3864Gracilaria caudata M_176_S67 malegeneNODE_604_length_21025_cov_4.278303 10218..10808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2Gcaud3864.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_604_length_21025_cov_4.278303 10218..10808 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2.start1Gcaud3864.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_604_length_21025_cov_4.278303 10218..10220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2.CDS1Gcaud3864.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_604_length_21025_cov_4.278303 10218..10634 +
Gcaud3864.t2.CDS2Gcaud3864.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_604_length_21025_cov_4.278303 10746..10808 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2.exon1Gcaud3864.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_604_length_21025_cov_4.278303 10218..10634 +
Gcaud3864.t2.exon2Gcaud3864.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_604_length_21025_cov_4.278303 10746..10808 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2.intron1Gcaud3864.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_604_length_21025_cov_4.278303 10635..10745 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3864.t2.stop1Gcaud3864.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_604_length_21025_cov_4.278303 10806..10808 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MAATGKSWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQI
RNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRG
GRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSIVLRDWSFKAH
NNTDQSPSS*
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spliced messenger RNA

>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:10218..10808+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCACGGGCAAGAGCTGGTTGGCCGCCGCCGCTGCGCCCGTTCG
CACACAACCAAAGGGCGCTCACTTGCTTCATCGAACCTATCAATTCAGTT
ACGTGCATCGTTCCATGGATCGCAAAAATGAGGATTACAAGAATCAGATC
CGTAACATAGCAACCGTGGGAACCGTGGAAGAATTTTGGGCTGTGTATAC
TCATCTTAACCGTGTGAATAAACTGTCGCCCAACACTGACTATTTTCTGT
TCCAAAAGGGTGTGCAACCTATGTGGGAAGACGACGCTAACAAACGGGGA
GGTAGGCTAACCATTCGACTGCAAAAGGCCGCCAGCCCTCGCGCTTTTGA
GGACCTTTGTCTGGCGCTTATCGGCGAACAATTCGAAACCGACGACATCT
GTGGAATTGCTTGTTCGATCGTGCTGCGCGACTGGTCGTTCAAGGCACAC
AATAATACGGATCAATCGCCCAGCTCGTAA
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protein sequence of Gcaud3864.t2

>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MAATGKSWLAAAAAPVRTQPKGAHLLHRTYQFSYVHRSMDRKNEDYKNQI
RNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRG
GRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSIVLRDWSFKAH
NNTDQSPSS*
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mRNA from alignment at NODE_604_length_21025_cov_4.278303:10218..10808+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:10218..10808+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCACGGGCAAGAGCTGGTTGGCCGCCGCCGCTGCGCCCGTTCG
CACACAACCAAAGGGCGCTCACTTGCTTCATCGAACCTATCAATTCAGTT
ACGTGCATCGTTCCATGGATCGCAAAAATGAGGATTACAAGAATCAGATC
CGTAACATAGCAACCGTGGGAACCGTGGAAGAATTTTGGGCTGTGTATAC
TCATCTTAACCGTGTGAATAAACTGTCGCCCAACACTGACTATTTTCTGT
TCCAAAAGGGTGTGCAACCTATGTGGGAAGACGACGCTAACAAACGGGGA
GGTAGGCTAACCATTCGACTGCAAAAGGCCGCCAGCCCTCGCGCTTTTGA
GGACCTTTGTCTGGCGCTTATCGGCGAACAATTCGAAACCGACGACATCT
GTGGAATTGCTTGTTCGGTAAGAACCTACGAAAACAATCTGAGCATATGG
CTCAAGGATGCTAACAACAAGCAACTACTTGTTCGCGTGGAGAGTATTGC
GCGACGCAATTTGAACTTGGAGCCCAAGATCGTGCTGCGCGACTGGTCGT
TCAAGGCACACAATAATACGGATCAATCGCCCAGCTCGTAA
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Coding sequence (CDS) from alignment at NODE_604_length_21025_cov_4.278303:10218..10808+

>Gcaud3864.t2 ID=Gcaud3864.t2|Name=Gcaud3864.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:10218..10808+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCACGGGCAAGAGCTGGTTGGCCGCCGCCGCTGCGCCCGTTCG
CACACAACCAAAGGGCGCTCACTTGCTTCATCGAACCTATCAATTCAGTT
ACGTGCATCGTTCCATGGATCGCAAAAATGAGGATTACAAGAATCAGATC
CGTAACATAGCAACCGTGGGAACCGTGGAAGAATTTTGGGCTGTGTATAC
TCATCTTAACCGTGTGAATAAACTGTCGCCCAACACTGACTATTTTCTGT
TCCAAAAGGGTGTGCAACCTATGTGGGAAGACGACGCTAACAAACGGGGA
GGTAGGCTAACCATTCGACTGCAAAAGGCCGCCAGCCCTCGCGCTTTTGA
GGACCTTTGTCTGGCGCTTATCGGCGAACAATTCGAAACCGACGACATCT
GTGGAATTGCTTGTTCGATCGTGCTGCGCGACTGGTCGTTCAAGGCACAC
AATAATACGGATCAATCGCCCAGCTCGTAA
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