Gcaud3861.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3861.t1
Unique NameGcaud3861.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length661
Homology
BLAST of Gcaud3861.t1 vs. uniprot
Match: A0A2V3J6U8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U8_9FLOR)

HSP 1 Score: 706 bits (1821), Expect = 1.470e-242
Identity = 430/949 (45.31%), Postives = 517/949 (54.48%), Query Frame = 0
Query:    9 VPITMENILNALSVLHRGDQRVSEADRYLAQARASPQ----------------------ALYTRIRADWLVMDNNARSAAVSLAVEALLSPTLAQQNQAARSSAVYYFGKALGGAVSRSPQAFQEPMWDMLILKLREKAALKCDVMAAIAGEMDQNATSHVANHVQIRAFCRSKAHQVVPDAVFLLVSSRRNETLSEEHLQQLKAAVQCLQAWTPYSDKIQIANALLHVIVIPQLAQSATEALNEVVGYSGTSLSLLLSTTKGLAAAFHGASGPDAHTIHHSISEVVCSLSEGNADELMEQQTEQSGEVIRNVIDLLWTCLNAPDKSSFFAAIEGWMAWIAADHLMQEDQARLGSDRICAVLSVVIQRMESLSFIRDHFSPELEDGESEEEKGPILDLLATGALSIGHQRYLDLIFTFLSVDDYTPPSQVCAALEALGASKDSAEDANIDEREWNKSQQVLDRVLRLAGVGSDNATSNSNGGSLHWQTVLQRSALGALASHGLLLRRDEKLFYRTAVCAVNALRRHELANRGATLLQSLAEIQAQSLLPFLRELITALNQSVSQLSTGAAEKATYAVASVASLLRLRQERVNALEEMVH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLFAMCRIISGELDENTILRDCLKAAFGVDSVPKEGLDRNVREMLFRGCYASVGNKKEFRQALDEFGRVCSM 657
            +PIT ENI  AL VL  GD R+  AD YLAQARASPQ                      ALYTRIR+DWL +D+N RS+AVSLAVEALLS +LAQQ QA  SS V+Y GKALG AVS SPQ FQEP+W+ML+LKL+ + ALKCDVMAAIA E+D NATSHVANHVQIRAFCRS+AHQVVPDA++LL S R NET+SEE ++QL+ AVQCLQ+WTPY+DK Q+A+ALL VI IPQLA S TEALNE+VGYSGTSL LLL T +GL AAFH A GPD H +HH+ISEVVCSLSE NADELMEQQT+QS  VI  VI+LLW CLN PDK+SFFAAIEGWMAW+AADHLMQ DQ RLG DR+ AVLSVVIQRMESLSF+R  F PEL++ + ++EKGP++DLL  G+LSIGH +Y+ L   FLS     PP Q+CA LEAL AS            +W   ++VL+ V+RL   G+  A S  NG    WQTVL+ S L ALAS+ LLL +D+KLFYR+AVCAV AL++ ELA +GA LL++L E+    L+ FL++LI  LN SV+++S  AAE+ATYAVAS+A  L  R ERV+ALEE+V                                                                                                                                                                                                                                                                                       VLFAMCRII+G+LDE  +LR+CL++AFG+++VPKEGL+R+VREMLFRGCY+SVGNKKEFR+ALD+ GRVC M
Sbjct:    8 LPITTENIHKALLVLQHGDHRLLHADHYLAQARASPQVWQVLPALLASTSQTSLLFGAQALYTRIRSDWLALDDNIRSSAVSLAVEALLSHSLAQQTQANCSSVVHYLGKALGCAVSMSPQQFQEPLWEMLVLKLQGRRALKCDVMAAIATELDHNATSHVANHVQIRAFCRSRAHQVVPDAIYLLNSVRNNETVSEECIKQLRVAVQCLQSWTPYADKAQVADALLKVIGIPQLAGSVTEALNEIVGYSGTSLPLLLCTARGLTAAFHAARGPDMHIVHHAISEVVCSLSEWNADELMEQQTDQSRVVIHTVIELLWICLNVPDKASFFAAIEGWMAWVAADHLMQADQPRLGVDRVSAVLSVVIQRMESLSFVRACFEPELDEEDGDDEKGPVVDLLCVGSLSIGHYKYILLTSKFLSEASSRPPGQICATLEALAASTXXXXXXXXXXHDWKGVREVLETVIRLVESGA--AGSIQNGDGHPWQTVLRSSGLKALASYTLLLVKDDKLFYRSAVCAVRALQQPELARQGACLLRNLGEVGPNFLVQFLQDLIMVLNHSVTKMSVSAAEEATYAVASIACKLETRGERVSALEELVRKACERLCVAARGKDDLVLNEASLCRDLILLSTAVRVYNDQEAAVCVFQRIRDAVFQLCRRHCANGVISKAICTLLEVNASPTLLDEDDEVSDECVSAHDEKCRLAFTVSVLKLVAECFKRSGPDGENAWLKTMNKLVPDLVTGMEDNMGVFDGDALDCVRECVQCAVVGLKNFSSENFDTQPEMTRLVFKLVTTLTTRASGTVLPLASEISHTAMRIIQSSEVGSVKAGLSFWKALFSRRAGAMLQQTVLNVTGGPNAIAAGALCAARYTRCASDAADVLFAMCRIIAGQLDEKQMLRECLRSAFGMENVPKEGLERSVREMLFRGCYSSVGNKKEFRKALDKVGRVCGM 954          
BLAST of Gcaud3861.t1 vs. uniprot
Match: R7QDU7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDU7_CHOCR)

HSP 1 Score: 274 bits (701), Expect = 3.080e-77
Identity = 207/631 (32.81%), Postives = 312/631 (49.45%), Query Frame = 0
Query:   47 LYTRIRADWLVMDNNARS-AAVSLAVEALLSPTLAQQNQAARSSAVYYFGKALGGAVSRSPQA-FQEPMWDMLILKLREKAALKCDVMAAIAGEMDQNATSHVANHVQIRAFCRSKAHQVVPDAVFLLVSSRRNETLSEEHLQ--QLKAAVQCLQAWTPYSDKIQIANALLHVIVIPQLAQSATEALNEVVGYSGTSLSLLLSTTKGLAAAFH---GASGPDAHTIHHSISEVVCSLSEGNADELMEQQTEQSGEVIRNVIDLLWTCLNAPDKSSFFAAIEGWMAWIAADHLMQEDQARLGSDRICAVLSVVIQRMESLSFIRDHFSPELED-GESEEEKGPILDLLATGALSIGHQRYLDLIFTFLSVDDYTPPSQVCAALEALGASKDSAEDANIDEREWNKSQQVLDRVLRLAGVGSDNATSNSNGGSLHWQTVLQRSALGALASHGLLL--RRDEKLFYRTAVCAVNALRRHELANRGATLLQSLAEIQAQSLLPFLRELITALNQSVSQLSTGAAEKATYAVASVASLLRLRQERVNAL----EEMVHVLFAMCRIISGELDENTILRDCLKAAFGVDSVPKEGLDRNV----REMLFRGCYASVGNKKEFRQALDEFGRVCSMVT 659
            ++ R RADWL   N A    A  L +E L          AA +S V++FGK  G  +S +     ++ MW  LI +L     LKC+ +AA   E+D  + SHV  +  +RAFC+SKAH+V+   V +L S         + +    L+AAV CL AW  Y+D+  IA+ LL  I +PQLA  A+E L E+VGYSG+++ LL+ T  GL + F    G SG    T+HH+I+EVV SLS+GNADEL+EQ    S  ++     LL  CL   D +SFFA+++GW +WI A +L++++QARL  +R+  V+ +V+QR+ SL F+ D          E+ +E   + DLL      IG   Y+++I  F   D       +CAAL ++  + +  E     + + +    +L R+L L    S N+    NG        ++  AL A+ S   LL  +  E  F R   CA   +   ++  + +  L  LA+   + L  FL +L+++  +++SQ+S  AA      +A V S L  R ER  AL    EE    L +          E  + R     A G+  V    +  NV    R  +F    +  GN+   R A+     VC + T
Sbjct:    7 IHARTRADWLTFANEAHFLTAFHLVLEGLERAKHISSAGAAATSPVHFFGKTSGFCLSMAHTPNLRDVMWASLISQLGSDHVLKCNALAAAVQEIDHTSDSHVETYAVMRAFCQSKAHEVLTSPVAVLASLDAAPLSPHKPMSIPDLRAAVLCLHAWQRYADRNAIASVLLKAIRVPQLADDASETLAEMVGYSGSNMQLLMGTCDGLLSTFQHVRGCSGQS--TVHHAIAEVVSSLSDGNADELLEQVNTNSVLIVEKATQLLTLCLELRDDASFFASVQGWTSWITAANLVEQNQARLVLERVAHVVRLVVQRITSLQFMADLTESHGRGCPETNDELVCVRDLLLESTKCIGIGGYVEVIKPFFETDWNVSTRSLCAALFSVAVAGEIDESVGSQKEDRHVVLGLLGRILDLIETISANSREAGNG-----YASVKIFALSAMCSFAELLSDQGSEAEFRRALHCAGTGILDPQVNEKSSEFLYELADAHPERLRMFLTDLLSSGTRALSQMSDKAALNCVRGLAKVTSALETRGERQKALNIILEEPCKYLLSTRNEQETSTVEQKVCRSLGLVAAGLQEVNDNEIAMNVYSRLRGTIFEIAISRCGNETVSR-AICRVLEVCVLPT 629          
The following BLAST results are available for this feature:
BLAST of Gcaud3861.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6U8_9FLOR1.470e-24245.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDU7_CHOCR3.080e-7732.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 9..602
e-value: 4.9E-17
score: 63.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 14..593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_604_length_21025_cov_4.278303contigNODE_604_length_21025_cov_4.278303:3580..6462 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1Gcaud3861.t1Gracilaria caudata M_176_S67 malemRNANODE_604_length_21025_cov_4.278303 3580..6462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=661bp
MQGNGDPIVPITMENILNALSVLHRGDQRVSEADRYLAQARASPQALYTR
IRADWLVMDNNARSAAVSLAVEALLSPTLAQQNQAARSSAVYYFGKALGG
AVSRSPQAFQEPMWDMLILKLREKAALKCDVMAAIAGEMDQNATSHVANH
VQIRAFCRSKAHQVVPDAVFLLVSSRRNETLSEEHLQQLKAAVQCLQAWT
PYSDKIQIANALLHVIVIPQLAQSATEALNEVVGYSGTSLSLLLSTTKGL
AAAFHGASGPDAHTIHHSISEVVCSLSEGNADELMEQQTEQSGEVIRNVI
DLLWTCLNAPDKSSFFAAIEGWMAWIAADHLMQEDQARLGSDRICAVLSV
VIQRMESLSFIRDHFSPELEDGESEEEKGPILDLLATGALSIGHQRYLDL
IFTFLSVDDYTPPSQVCAALEALGASKDSAEDANIDEREWNKSQQVLDRV
LRLAGVGSDNATSNSNGGSLHWQTVLQRSALGALASHGLLLRRDEKLFYR
TAVCAVNALRRHELANRGATLLQSLAEIQAQSLLPFLRELITALNQSVSQ
LSTGAAEKATYAVASVASLLRLRQERVNALEEMVHVLFAMCRIISGELDE
NTILRDCLKAAFGVDSVPKEGLDRNVREMLFRGCYASVGNKKEFRQALDE
FGRVCSMVTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold