Gcaud3861.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3861.t1
Unique NameGcaud3861.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length661
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_604_length_21025_cov_4.278303contigNODE_604_length_21025_cov_4.278303:3580..6462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3861Gcaud3861Gracilaria caudata M_176_S67 malegeneNODE_604_length_21025_cov_4.278303 3580..6462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1Gcaud3861.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_604_length_21025_cov_4.278303 3580..6462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1.stop1Gcaud3861.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_604_length_21025_cov_4.278303 3580..3582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1.CDS1Gcaud3861.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_604_length_21025_cov_4.278303 3580..3809 -
Gcaud3861.t1.CDS2Gcaud3861.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_604_length_21025_cov_4.278303 4644..6261 -
Gcaud3861.t1.CDS3Gcaud3861.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_604_length_21025_cov_4.278303 6328..6462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1.exon1Gcaud3861.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_604_length_21025_cov_4.278303 3580..3809 -
Gcaud3861.t1.exon2Gcaud3861.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_604_length_21025_cov_4.278303 4644..6261 -
Gcaud3861.t1.exon3Gcaud3861.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_604_length_21025_cov_4.278303 6328..6462 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1.intron1Gcaud3861.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_604_length_21025_cov_4.278303 3810..4643 -
Gcaud3861.t1.intron2Gcaud3861.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_604_length_21025_cov_4.278303 6262..6327 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3861.t1.start1Gcaud3861.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_604_length_21025_cov_4.278303 6460..6462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=661bp
MQGNGDPIVPITMENILNALSVLHRGDQRVSEADRYLAQARASPQALYTR
IRADWLVMDNNARSAAVSLAVEALLSPTLAQQNQAARSSAVYYFGKALGG
AVSRSPQAFQEPMWDMLILKLREKAALKCDVMAAIAGEMDQNATSHVANH
VQIRAFCRSKAHQVVPDAVFLLVSSRRNETLSEEHLQQLKAAVQCLQAWT
PYSDKIQIANALLHVIVIPQLAQSATEALNEVVGYSGTSLSLLLSTTKGL
AAAFHGASGPDAHTIHHSISEVVCSLSEGNADELMEQQTEQSGEVIRNVI
DLLWTCLNAPDKSSFFAAIEGWMAWIAADHLMQEDQARLGSDRICAVLSV
VIQRMESLSFIRDHFSPELEDGESEEEKGPILDLLATGALSIGHQRYLDL
IFTFLSVDDYTPPSQVCAALEALGASKDSAEDANIDEREWNKSQQVLDRV
LRLAGVGSDNATSNSNGGSLHWQTVLQRSALGALASHGLLLRRDEKLFYR
TAVCAVNALRRHELANRGATLLQSLAEIQAQSLLPFLRELITALNQSVSQ
LSTGAAEKATYAVASVASLLRLRQERVNALEEMVHVLFAMCRIISGELDE
NTILRDCLKAAFGVDSVPKEGLDRNVREMLFRGCYASVGNKKEFRQALDE
FGRVCSMVTR*
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spliced messenger RNA

>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:3580..6462- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGAAATGGCGACCCTATCGTCCCAATCACGATGGAAAACATCCT
GAATGCCCTTTCGGTTCTCCACCGGGGAGACCAGCGCGTCTCAGAAGCTG
ACCGCTACCTTGCCCAAGCCAGGGCCTCACCACAGGCTCTATACACGCGT
ATTCGTGCTGATTGGTTGGTAATGGATAATAATGCTCGGTCGGCGGCAGT
TTCGTTAGCTGTCGAGGCGTTGTTGAGCCCCACATTGGCGCAGCAGAATC
AAGCCGCACGCAGCTCTGCTGTTTACTACTTTGGAAAAGCCCTTGGTGGT
GCAGTGTCCAGGTCGCCGCAAGCTTTTCAAGAGCCTATGTGGGACATGCT
GATTCTCAAACTGAGGGAAAAGGCAGCACTGAAGTGCGATGTCATGGCCG
CCATCGCTGGGGAAATGGATCAAAATGCTACAAGTCATGTAGCGAACCAT
GTTCAGATACGCGCATTTTGTCGATCCAAAGCCCATCAAGTTGTACCAGA
CGCAGTCTTTTTATTGGTGTCAAGTCGTCGAAATGAGACTCTTTCCGAAG
AGCACTTGCAGCAGTTGAAGGCGGCAGTACAATGTTTGCAAGCTTGGACG
CCTTACTCGGACAAAATCCAAATTGCAAACGCCCTTCTACATGTAATTGT
TATTCCTCAACTTGCTCAGTCCGCGACGGAGGCCTTAAATGAAGTCGTTG
GGTATAGCGGTACAAGCCTTTCTCTCCTCCTCAGCACTACCAAAGGTTTG
GCGGCGGCATTTCATGGAGCAAGCGGCCCAGACGCCCATACCATACATCA
CTCAATTTCGGAAGTCGTGTGCTCCTTATCCGAAGGGAATGCCGATGAGC
TGATGGAGCAACAGACCGAGCAGAGCGGCGAAGTTATTCGAAACGTGATT
GATTTGCTGTGGACTTGTCTCAACGCACCTGATAAATCTTCATTCTTCGC
TGCTATTGAAGGTTGGATGGCGTGGATAGCTGCAGATCATCTCATGCAAG
AAGATCAGGCACGGCTTGGTTCTGATCGTATTTGTGCTGTTCTTTCTGTC
GTGATTCAACGAATGGAATCGCTTTCTTTTATACGCGACCACTTTAGTCC
TGAGCTCGAAGATGGCGAAAGCGAAGAAGAGAAAGGTCCAATTCTTGATC
TTCTTGCCACGGGAGCCCTATCTATTGGTCATCAAAGGTATCTTGACCTC
ATATTCACGTTTCTGTCCGTAGATGATTATACGCCTCCAAGCCAGGTATG
CGCGGCATTGGAAGCTTTGGGAGCAAGCAAGGATTCTGCAGAAGATGCTA
ATATCGACGAACGAGAATGGAACAAATCGCAACAGGTGCTCGACAGGGTA
CTGCGGCTTGCCGGTGTGGGTTCCGATAATGCTACTTCCAATTCAAATGG
AGGTAGTCTCCACTGGCAGACTGTTTTGCAAAGATCGGCTCTTGGTGCTT
TAGCCTCACATGGTTTGTTGTTGAGAAGGGACGAAAAGCTGTTCTACAGA
ACCGCAGTTTGTGCTGTTAATGCCCTGCGACGACATGAGTTAGCAAATAG
AGGAGCGACGCTACTGCAAAGTCTTGCCGAGATTCAAGCACAATCTCTTC
TACCTTTCCTTCGAGAATTGATAACAGCGCTGAACCAGTCTGTCTCTCAG
CTATCAACAGGGGCCGCCGAAAAAGCTACATACGCTGTAGCCAGTGTTGC
CAGCCTACTTCGTTTACGACAAGAGAGAGTTAACGCTCTCGAAGAAATGG
TGCATGTGTTATTTGCCATGTGCCGAATCATTTCAGGAGAATTAGACGAG
AATACTATCCTGAGAGACTGTCTCAAAGCTGCATTCGGTGTGGACAGTGT
ACCCAAGGAGGGATTGGATAGAAATGTGCGTGAAATGCTTTTCCGTGGAT
GTTACGCCTCCGTTGGCAATAAGAAAGAATTCAGGCAAGCTCTTGACGAA
TTCGGACGAGTTTGCAGCATGGTAACACGATGA
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protein sequence of Gcaud3861.t1

>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=661bp
MQGNGDPIVPITMENILNALSVLHRGDQRVSEADRYLAQARASPQALYTR
IRADWLVMDNNARSAAVSLAVEALLSPTLAQQNQAARSSAVYYFGKALGG
AVSRSPQAFQEPMWDMLILKLREKAALKCDVMAAIAGEMDQNATSHVANH
VQIRAFCRSKAHQVVPDAVFLLVSSRRNETLSEEHLQQLKAAVQCLQAWT
PYSDKIQIANALLHVIVIPQLAQSATEALNEVVGYSGTSLSLLLSTTKGL
AAAFHGASGPDAHTIHHSISEVVCSLSEGNADELMEQQTEQSGEVIRNVI
DLLWTCLNAPDKSSFFAAIEGWMAWIAADHLMQEDQARLGSDRICAVLSV
VIQRMESLSFIRDHFSPELEDGESEEEKGPILDLLATGALSIGHQRYLDL
IFTFLSVDDYTPPSQVCAALEALGASKDSAEDANIDEREWNKSQQVLDRV
LRLAGVGSDNATSNSNGGSLHWQTVLQRSALGALASHGLLLRRDEKLFYR
TAVCAVNALRRHELANRGATLLQSLAEIQAQSLLPFLRELITALNQSVSQ
LSTGAAEKATYAVASVASLLRLRQERVNALEEMVHVLFAMCRIISGELDE
NTILRDCLKAAFGVDSVPKEGLDRNVREMLFRGCYASVGNKKEFRQALDE
FGRVCSMVTR*
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mRNA from alignment at NODE_604_length_21025_cov_4.278303:3580..6462-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2883bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:3580..6462- (Gracilaria caudata M_176_S67 male)
ATGCAGGGAAATGGCGACCCTATCGTCCCAATCACGATGGAAAACATCCT
GAATGCCCTTTCGGTTCTCCACCGGGGAGACCAGCGCGTCTCAGAAGCTG
ACCGCTACCTTGCCCAAGCCAGGGCCTCACCACAGGTATGGCACGTCCTA
CCCGCACTGCTCAACTCTCCATCGCAACCACAGCTTCTTTTTGCGGCACA
GGCTCTATACACGCGTATTCGTGCTGATTGGTTGGTAATGGATAATAATG
CTCGGTCGGCGGCAGTTTCGTTAGCTGTCGAGGCGTTGTTGAGCCCCACA
TTGGCGCAGCAGAATCAAGCCGCACGCAGCTCTGCTGTTTACTACTTTGG
AAAAGCCCTTGGTGGTGCAGTGTCCAGGTCGCCGCAAGCTTTTCAAGAGC
CTATGTGGGACATGCTGATTCTCAAACTGAGGGAAAAGGCAGCACTGAAG
TGCGATGTCATGGCCGCCATCGCTGGGGAAATGGATCAAAATGCTACAAG
TCATGTAGCGAACCATGTTCAGATACGCGCATTTTGTCGATCCAAAGCCC
ATCAAGTTGTACCAGACGCAGTCTTTTTATTGGTGTCAAGTCGTCGAAAT
GAGACTCTTTCCGAAGAGCACTTGCAGCAGTTGAAGGCGGCAGTACAATG
TTTGCAAGCTTGGACGCCTTACTCGGACAAAATCCAAATTGCAAACGCCC
TTCTACATGTAATTGTTATTCCTCAACTTGCTCAGTCCGCGACGGAGGCC
TTAAATGAAGTCGTTGGGTATAGCGGTACAAGCCTTTCTCTCCTCCTCAG
CACTACCAAAGGTTTGGCGGCGGCATTTCATGGAGCAAGCGGCCCAGACG
CCCATACCATACATCACTCAATTTCGGAAGTCGTGTGCTCCTTATCCGAA
GGGAATGCCGATGAGCTGATGGAGCAACAGACCGAGCAGAGCGGCGAAGT
TATTCGAAACGTGATTGATTTGCTGTGGACTTGTCTCAACGCACCTGATA
AATCTTCATTCTTCGCTGCTATTGAAGGTTGGATGGCGTGGATAGCTGCA
GATCATCTCATGCAAGAAGATCAGGCACGGCTTGGTTCTGATCGTATTTG
TGCTGTTCTTTCTGTCGTGATTCAACGAATGGAATCGCTTTCTTTTATAC
GCGACCACTTTAGTCCTGAGCTCGAAGATGGCGAAAGCGAAGAAGAGAAA
GGTCCAATTCTTGATCTTCTTGCCACGGGAGCCCTATCTATTGGTCATCA
AAGGTATCTTGACCTCATATTCACGTTTCTGTCCGTAGATGATTATACGC
CTCCAAGCCAGGTATGCGCGGCATTGGAAGCTTTGGGAGCAAGCAAGGAT
TCTGCAGAAGATGCTAATATCGACGAACGAGAATGGAACAAATCGCAACA
GGTGCTCGACAGGGTACTGCGGCTTGCCGGTGTGGGTTCCGATAATGCTA
CTTCCAATTCAAATGGAGGTAGTCTCCACTGGCAGACTGTTTTGCAAAGA
TCGGCTCTTGGTGCTTTAGCCTCACATGGTTTGTTGTTGAGAAGGGACGA
AAAGCTGTTCTACAGAACCGCAGTTTGTGCTGTTAATGCCCTGCGACGAC
ATGAGTTAGCAAATAGAGGAGCGACGCTACTGCAAAGTCTTGCCGAGATT
CAAGCACAATCTCTTCTACCTTTCCTTCGAGAATTGATAACAGCGCTGAA
CCAGTCTGTCTCTCAGCTATCAACAGGGGCCGCCGAAAAAGCTACATACG
CTGTAGCCAGTGTTGCCAGCCTACTTCGTTTACGACAAGAGAGAGTTAAC
GCTCTCGAAGAAATGGTGCGTAAGCCCTGCGAAAGATTATGTGCCGCGGC
TGCGTGCGAGGTAGAAGTCTCATTGGATGAAGCTGTTCTATGTCGGGACC
TAGCGCTGCTCAGCACGGCCATGCGTGTTTACAATGACCACGAAGCGGTT
GCGTTTGTGTTCCAGCGGGTGAGAGAGCCTGTATTTCACTTGGCTCAAAG
ACACTGTGGAAATGGGGTGATATCCAAGGCTATATGCAACCTCTTGGAAA
TCAATGCACTGCCGACTCTATTTGACGATGAGGATGAATCGCAAAGCGAT
CGAGTGTACGCTCGAGATGAAAAGTCACGTCTTCAACTCATAGTCGCCAT
CACCAAGCTTCTTGGCGAATGCTTCAAGGATTCGAGGCCTGATGGGGAAG
ATGTGTGGCTGAAGACAATGAATAAGCTGATCCCCGGCCTTGTGACTGGG
GTAGAAGATGCTTTTGGCTCCTTTAACGGCGAAGCGTTAGACTGCGTTAC
GGAGTGCGTTCGATGTGGAATAGTTGGCCTAAACATGTTTTCGGGAGGGA
GCTACGACACACAACCGGAAATGACGCGAATGTTTTTTAAGCTTGTAACA
ACGCTGACATCTCGAGCAAGCAGTGCTCTGCTACCAGTTGCGTCAGAGAT
TTCAATGACTGCTATGAAGACATTGTATTGCAGCAATGTGGGAAACGTGA
AGGCAAGTCTCAACTTTTGGAAAGCTCTGTTCTCTAGAACCGCGGGGCCC
TCCCTTCAGCAGGCGATTTTGAACGTCGCCAGTGGGCCTAACGGCGTCTC
TGCAGGGGCATTGTGTGCAGCAAGAAATTCGCGATGTGCGTCTGATGTTG
CAGATGTGTTATTTGCCATGTGCCGAATCATTTCAGGAGAATTAGACGAG
AATACTATCCTGAGAGACTGTCTCAAAGCTGCATTCGGTGTGGACAGTGT
ACCCAAGGAGGGATTGGATAGAAATGTGCGTGAAATGCTTTTCCGTGGAT
GTTACGCCTCCGTTGGCAATAAGAAAGAATTCAGGCAAGCTCTTGACGAA
TTCGGACGAGTTTGCAGCATGGTAACACGATGA
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Coding sequence (CDS) from alignment at NODE_604_length_21025_cov_4.278303:3580..6462-

>Gcaud3861.t1 ID=Gcaud3861.t1|Name=Gcaud3861.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1983bp|location=Sequence derived from alignment at NODE_604_length_21025_cov_4.278303:3580..6462- (Gracilaria caudata M_176_S67 male)
ATGCAGGGAAATGGCGACCCTATCGTCCCAATCACGATGGAAAACATCCT
GAATGCCCTTTCGGTTCTCCACCGGGGAGACCAGCGCGTCTCAGAAGCTG
ACCGCTACCTTGCCCAAGCCAGGGCCTCACCACAGGCTCTATACACGCGT
ATTCGTGCTGATTGGTTGGTAATGGATAATAATGCTCGGTCGGCGGCAGT
TTCGTTAGCTGTCGAGGCGTTGTTGAGCCCCACATTGGCGCAGCAGAATC
AAGCCGCACGCAGCTCTGCTGTTTACTACTTTGGAAAAGCCCTTGGTGGT
GCAGTGTCCAGGTCGCCGCAAGCTTTTCAAGAGCCTATGTGGGACATGCT
GATTCTCAAACTGAGGGAAAAGGCAGCACTGAAGTGCGATGTCATGGCCG
CCATCGCTGGGGAAATGGATCAAAATGCTACAAGTCATGTAGCGAACCAT
GTTCAGATACGCGCATTTTGTCGATCCAAAGCCCATCAAGTTGTACCAGA
CGCAGTCTTTTTATTGGTGTCAAGTCGTCGAAATGAGACTCTTTCCGAAG
AGCACTTGCAGCAGTTGAAGGCGGCAGTACAATGTTTGCAAGCTTGGACG
CCTTACTCGGACAAAATCCAAATTGCAAACGCCCTTCTACATGTAATTGT
TATTCCTCAACTTGCTCAGTCCGCGACGGAGGCCTTAAATGAAGTCGTTG
GGTATAGCGGTACAAGCCTTTCTCTCCTCCTCAGCACTACCAAAGGTTTG
GCGGCGGCATTTCATGGAGCAAGCGGCCCAGACGCCCATACCATACATCA
CTCAATTTCGGAAGTCGTGTGCTCCTTATCCGAAGGGAATGCCGATGAGC
TGATGGAGCAACAGACCGAGCAGAGCGGCGAAGTTATTCGAAACGTGATT
GATTTGCTGTGGACTTGTCTCAACGCACCTGATAAATCTTCATTCTTCGC
TGCTATTGAAGGTTGGATGGCGTGGATAGCTGCAGATCATCTCATGCAAG
AAGATCAGGCACGGCTTGGTTCTGATCGTATTTGTGCTGTTCTTTCTGTC
GTGATTCAACGAATGGAATCGCTTTCTTTTATACGCGACCACTTTAGTCC
TGAGCTCGAAGATGGCGAAAGCGAAGAAGAGAAAGGTCCAATTCTTGATC
TTCTTGCCACGGGAGCCCTATCTATTGGTCATCAAAGGTATCTTGACCTC
ATATTCACGTTTCTGTCCGTAGATGATTATACGCCTCCAAGCCAGGTATG
CGCGGCATTGGAAGCTTTGGGAGCAAGCAAGGATTCTGCAGAAGATGCTA
ATATCGACGAACGAGAATGGAACAAATCGCAACAGGTGCTCGACAGGGTA
CTGCGGCTTGCCGGTGTGGGTTCCGATAATGCTACTTCCAATTCAAATGG
AGGTAGTCTCCACTGGCAGACTGTTTTGCAAAGATCGGCTCTTGGTGCTT
TAGCCTCACATGGTTTGTTGTTGAGAAGGGACGAAAAGCTGTTCTACAGA
ACCGCAGTTTGTGCTGTTAATGCCCTGCGACGACATGAGTTAGCAAATAG
AGGAGCGACGCTACTGCAAAGTCTTGCCGAGATTCAAGCACAATCTCTTC
TACCTTTCCTTCGAGAATTGATAACAGCGCTGAACCAGTCTGTCTCTCAG
CTATCAACAGGGGCCGCCGAAAAAGCTACATACGCTGTAGCCAGTGTTGC
CAGCCTACTTCGTTTACGACAAGAGAGAGTTAACGCTCTCGAAGAAATGG
TGCATGTGTTATTTGCCATGTGCCGAATCATTTCAGGAGAATTAGACGAG
AATACTATCCTGAGAGACTGTCTCAAAGCTGCATTCGGTGTGGACAGTGT
ACCCAAGGAGGGATTGGATAGAAATGTGCGTGAAATGCTTTTCCGTGGAT
GTTACGCCTCCGTTGGCAATAAGAAAGAATTCAGGCAAGCTCTTGACGAA
TTCGGACGAGTTTGCAGCATGGTAACACGATGA
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