Gcaud3811.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3811.t1
Unique NameGcaud3811.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Homology
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BLAST of Gcaud3811.t1 vs. uniprot
Match: A0A2V3IQ04_9FLOR (Zinc finger and SCAN domain-containing protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ04_9FLOR)

HSP 1 Score: 193 bits (490), Expect = 5.230e-58
Identity = 186/203 (91.63%), Postives = 192/203 (94.58%), Query Frame = 0 
Query:   30 YWSTVLNSPSGKYDCVGCHAIYSTQAALQQHQLKCVYFATGHHKAHPIGVIPEKPYQCAQCGVAFKKNSNLVKHMKLVHLGERNFECPYANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRKTFGRKSVLARHMQTHRSE 232
            YWSTVLN    K+DCVGCHAIYS+Q+AL  HQ  CVY+ TGHHKAHPIG+IPEKPYQCAQCGVAFKKNSNLVKHMKLVHLGERNFECPY NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAC+AXXXXXXXXXXXXXXXXXXXXXXXXXXXPG KTFGRKSVLARHMQTHRSE
Sbjct:   47 YWSTVLNPQPAKFDCVGCHAIYSSQSALHNHQRTCVYYTTGHHKAHPIGLIPEKPYQCAQCGVAFKKNSNLVKHMKLVHLGERNFECPYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDACSAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGHKTFGRKSVLARHMQTHRSE 249
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BLAST of Gcaud3811.t1 vs. uniprot
Match: R7QNN3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNN3_CHOCR)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-11
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0 
Query:   27 TSDYWSTVLNSPSGKYDCVGCHAIYSTQAALQQHQLKCVYFATGHHKAHPIGVIPEKPYQCAQCGVAFKKNSNLVKHMKLVHLGERNFEC 116
            +S YWSTV++    ++ C GC + Y+ +  L+ H   C   A              KP+ C +C  AFKKNSNL KHM+LVH GE+NF C
Sbjct:   46 SSSYWSTVID----RHQCDGCGSHYNNKRELELHSTTCQGNA--------------KPFVCPECPTAFKKNSNLAKHMRLVHRGEKNFAC 117
The following BLAST results are available for this feature:
BLAST of Gcaud3811.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQ04_9FLOR5.230e-5891.63Zinc finger and SCAN domain-containing protein 22 ... [more]
R7QNN3_CHOCR1.080e-1141.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 145..170
e-value: 5.3E-4
score: 29.3
coord: 85..108
e-value: 0.0014
score: 27.9
coord: 176..199
e-value: 0.0034
score: 26.6
coord: 205..229
e-value: 0.0062
score: 25.7
coord: 114..139
e-value: 3.9E-4
score: 29.7
coord: 42..62
e-value: 150.0
score: 2.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 85..108
e-value: 6.6E-6
score: 26.3
coord: 176..199
e-value: 0.0011
score: 19.3
coord: 145..170
e-value: 2.8E-5
score: 24.3
coord: 114..139
e-value: 1.1E-4
score: 22.4
coord: 205..229
e-value: 2.0E-4
score: 21.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 87..108
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 116..139
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 147..170
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 178..199
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 176..204
score: 14.066319
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 85..113
score: 14.835293
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 205..234
score: 8.870543
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 114..144
score: 14.481979
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 145..175
score: 15.313305
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 203..232
e-value: 3.8E-8
score: 34.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 16..110
e-value: 3.1E-11
score: 45.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 111..140
e-value: 5.4E-10
score: 40.8
coord: 141..171
e-value: 5.9E-12
score: 47.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 172..202
e-value: 1.1E-11
score: 46.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 139..228
coord: 20..194
NoneNo IPR availablePANTHERPTHR24390:SF159GH23506P-RELATEDcoord: 139..228
NoneNo IPR availablePANTHERPTHR24390:SF159GH23506P-RELATEDcoord: 20..194
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 83..136
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 124..185
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 174..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_71_length_56537_cov_4.318092contigNODE_71_length_56537_cov_4.318092:49402..50106 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3811.t1Gcaud3811.t1Gracilaria caudata M_176_S67 malemRNANODE_71_length_56537_cov_4.318092 49402..50106 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MSSSSSSSSTHAPSSSYSHTQSPPRNTSDYWSTVLNSPSGKYDCVGCHAI
YSTQAALQQHQLKCVYFATGHHKAHPIGVIPEKPYQCAQCGVAFKKNSNL
VKHMKLVHLGERNFECPYANCGRMFGQKSNLNSHVRAVHLHQRPFKCDKP
GCSRAFSQKSGLKAHIKTVHDGERPYKCDACTAAFGHRGDLNRHIRVLHN
KERPYECHVCPGRKTFGRKSVLARHMQTHRSEPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf