Gcaud3811.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3811.t1
Unique Name	Gcaud3811.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	235

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:49402..50106 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	126957.SMAR014229-PA
PFAMs	zf-C2H2,zf-C2H2_11,zf-C2H2_4
Max annot lvl	33208\|Metazoa
GOs	GO:0000976,GO:0000977,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0008150,GO:0008270,GO:0009605,GO:0009628,GO:0009629,GO:0040011,GO:0042330,GO:0042332,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0097159,GO:1901363,GO:1990837
Evalue	8.93e-05
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,3A341@33154\|Opisthokonta,3BQYD@33208\|Metazoa,3D7AA@33213\|Bilateria,41ZGG@6656\|Arthropoda
Description	Metal ion binding
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3811	Gcaud3811	Gracilaria caudata M_176_S67 male	gene	NODE_71_length_56537_cov_4.318092 49402..50106 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3811.t1.stop1	Gcaud3811.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_71_length_56537_cov_4.318092 49402..49404 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3811.t1.CDS1	Gcaud3811.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 49402..50106 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3811.t1.exon1	Gcaud3811.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 49402..50106 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3811.t1.start1	Gcaud3811.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_71_length_56537_cov_4.318092 50104..50106 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3811.t1	Gcaud3811.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_71_length_56537_cov_4.318092 49402..50106 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_71_length_56537_cov_4.318092:49402..50106-
coding sequence from alignment at NODE_71_length_56537_cov_4.318092:49402..50106-

mRNA sequence

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MSSSSSSSSTHAPSSSYSHTQSPPRNTSDYWSTVLNSPSGKYDCVGCHAI
YSTQAALQQHQLKCVYFATGHHKAHPIGVIPEKPYQCAQCGVAFKKNSNL
VKHMKLVHLGERNFECPYANCGRMFGQKSNLNSHVRAVHLHQRPFKCDKP
GCSRAFSQKSGLKAHIKTVHDGERPYKCDACTAAFGHRGDLNRHIRVLHN
KERPYECHVCPGRKTFGRKSVLARHMQTHRSEPF*

spliced messenger RNA

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:49402..50106- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGTCTTCCTCCTCCTCCTCAACGCACGCTCCGTCGTCGTCCTA
TTCGCACACCCAATCGCCCCCGCGAAACACCTCCGACTACTGGAGCACCG
TTCTTAACAGCCCGTCTGGTAAGTACGACTGCGTCGGCTGTCACGCAATC
TACAGCACACAGGCCGCACTCCAACAGCACCAGCTCAAGTGCGTGTACTT
CGCAACTGGTCATCACAAGGCTCATCCCATCGGCGTCATCCCCGAGAAGC
CCTATCAGTGCGCTCAGTGTGGCGTCGCCTTCAAGAAGAACTCCAACCTC
GTCAAACATATGAAGCTCGTCCATCTCGGCGAGCGCAACTTCGAGTGCCC
CTACGCCAACTGTGGCCGCATGTTCGGTCAAAAGTCAAACCTCAACAGTC
ACGTGCGAGCTGTTCATCTGCACCAACGCCCGTTCAAGTGTGATAAGCCA
GGTTGTTCCCGAGCTTTTTCCCAGAAATCCGGGCTCAAGGCTCACATAAA
GACTGTGCATGATGGCGAAAGACCGTACAAATGCGACGCATGCACGGCCG
CATTTGGCCATCGTGGGGATCTCAATCGACATATTCGTGTCCTACACAAC
AAGGAACGGCCTTACGAGTGCCATGTGTGCCCCGGGCGCAAAACCTTTGG
CCGCAAGTCTGTGCTTGCGCGACACATGCAAACGCATCGCTCAGAGCCCT
TCTAG

protein sequence of Gcaud3811.t1

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MSSSSSSSSTHAPSSSYSHTQSPPRNTSDYWSTVLNSPSGKYDCVGCHAI
YSTQAALQQHQLKCVYFATGHHKAHPIGVIPEKPYQCAQCGVAFKKNSNL
VKHMKLVHLGERNFECPYANCGRMFGQKSNLNSHVRAVHLHQRPFKCDKP
GCSRAFSQKSGLKAHIKTVHDGERPYKCDACTAAFGHRGDLNRHIRVLHN
KERPYECHVCPGRKTFGRKSVLARHMQTHRSEPF*

mRNA from alignment at NODE_71_length_56537_cov_4.318092:49402..50106-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:49402..50106- (Gracilaria caudata M_176_S67 male)
ATGTCATCGTCTTCCTCCTCCTCCTCAACGCACGCTCCGTCGTCGTCCTA
TTCGCACACCCAATCGCCCCCGCGAAACACCTCCGACTACTGGAGCACCG
TTCTTAACAGCCCGTCTGGTAAGTACGACTGCGTCGGCTGTCACGCAATC
TACAGCACACAGGCCGCACTCCAACAGCACCAGCTCAAGTGCGTGTACTT
CGCAACTGGTCATCACAAGGCTCATCCCATCGGCGTCATCCCCGAGAAGC
CCTATCAGTGCGCTCAGTGTGGCGTCGCCTTCAAGAAGAACTCCAACCTC
GTCAAACATATGAAGCTCGTCCATCTCGGCGAGCGCAACTTCGAGTGCCC
CTACGCCAACTGTGGCCGCATGTTCGGTCAAAAGTCAAACCTCAACAGTC
ACGTGCGAGCTGTTCATCTGCACCAACGCCCGTTCAAGTGTGATAAGCCA
GGTTGTTCCCGAGCTTTTTCCCAGAAATCCGGGCTCAAGGCTCACATAAA
GACTGTGCATGATGGCGAAAGACCGTACAAATGCGACGCATGCACGGCCG
CATTTGGCCATCGTGGGGATCTCAATCGACATATTCGTGTCCTACACAAC
AAGGAACGGCCTTACGAGTGCCATGTGTGCCCCGGGCGCAAAACCTTTGG
CCGCAAGTCTGTGCTTGCGCGACACATGCAAACGCATCGCTCAGAGCCCT
TCTAG

Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:49402..50106-

>Gcaud3811.t1 ID=Gcaud3811.t1|Name=Gcaud3811.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:49402..50106- (Gracilaria caudata M_176_S67 male)
ATGTCATCGTCTTCCTCCTCCTCCTCAACGCACGCTCCGTCGTCGTCCTA
TTCGCACACCCAATCGCCCCCGCGAAACACCTCCGACTACTGGAGCACCG
TTCTTAACAGCCCGTCTGGTAAGTACGACTGCGTCGGCTGTCACGCAATC
TACAGCACACAGGCCGCACTCCAACAGCACCAGCTCAAGTGCGTGTACTT
CGCAACTGGTCATCACAAGGCTCATCCCATCGGCGTCATCCCCGAGAAGC
CCTATCAGTGCGCTCAGTGTGGCGTCGCCTTCAAGAAGAACTCCAACCTC
GTCAAACATATGAAGCTCGTCCATCTCGGCGAGCGCAACTTCGAGTGCCC
CTACGCCAACTGTGGCCGCATGTTCGGTCAAAAGTCAAACCTCAACAGTC
ACGTGCGAGCTGTTCATCTGCACCAACGCCCGTTCAAGTGTGATAAGCCA
GGTTGTTCCCGAGCTTTTTCCCAGAAATCCGGGCTCAAGGCTCACATAAA
GACTGTGCATGATGGCGAAAGACCGTACAAATGCGACGCATGCACGGCCG
CATTTGGCCATCGTGGGGATCTCAATCGACATATTCGTGTCCTACACAAC
AAGGAACGGCCTTACGAGTGCCATGTGTGCCCCGGGCGCAAAACCTTTGG
CCGCAAGTCTGTGCTTGCGCGACACATGCAAACGCATCGCTCAGAGCCCT
TCTAG