Gcaud3765.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3765.t1
Unique NameGcaud3765.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length484
Homology
BLAST of Gcaud3765.t1 vs. uniprot
Match: A0A2V3IYD1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYD1_9FLOR)

HSP 1 Score: 454 bits (1167), Expect = 4.360e-153
Identity = 234/444 (52.70%), Postives = 304/444 (68.47%), Query Frame = 0
Query:    7 AKNRTILTAIPSPPSDFINISSENQKAGQYVFGQSGFVPDASINNSGLFAKRLDGAAEEIILGFLSIIMIMTITELVLTILSSKRHNQEPEQSDFAHVALKVDGLLHFNGKWMSCRQNWLPSR---RRDKEIIMTLFAVLVAALIFVMDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVTPVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHIVSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMILEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLETTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPGLIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWDNFER 447
            ++NRTILT IP  P  F+ +  E+Q  GQYV GQS F  +  I    L  + + G+AEE +LG LSI MIM +TEL+LT LS KR + + E++++A+ A++VD  L  N +    R+ W P R   RR   + +T+FAV   A+I ++D G + LTQP+   S+   YNLKG+HPI    GLGKFLRR A+ERPCVTP+FS SNP RNFS+SAC TL LE AH + TD VN++K GSWFH+GG DHI++FGNASI +KTR  +YG   GTRR+LF +L+E YL    YLH++V+Y I+EESCNA + T+ C+EV+ EHRS +  V RT+ LWTTR GK ++ V GLET L   I KPW+TVFK VGPL+T E + EV G G YSHI+TEE  + I GL+V E R LGV+GMLL    LV  L   +R  RPV L+ +AWD FE+
Sbjct:    2 SENRTILTTIPEAPYGFVEVLPESQVPGQYVVGQSSFTGNPDIKKPFLLIRNVGGSAEEFMLGLLSIFMIMVVTELLLTFLSRKRSDIDDEENEYAYAAVRVDEYLRLNMERALRREGW-PRRVGQRRKVHLTVTVFAV--GAVILLIDTGTIFLTQPSISVSKPGDYNLKGTHPIAASPGLGKFLRRTAIERPCVTPIFSNSNPLRNFSMSACTTLGLEQAHTRVTDTVNTIKFGSWFHEGGGDHIITFGNASITMKTRLFLYGVENGTRRILFSMLYEDYLPAIRYLHELVMYGIMEESCNANYATRTCDEVLKEHRSESTPVNRTLVLWTTRKGKRRESVLGLETNLFLEIRKPWVTVFKRVGPLLTTEQVTEVEGPGSYSHINTEERQENIRGLLVQESRNLGVIGMLLADSVLVAFLVCARRYCRPVSLSQKAWDLFEK 442          
BLAST of Gcaud3765.t1 vs. uniprot
Match: A0A2V3IZE0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZE0_9FLOR)

HSP 1 Score: 400 bits (1027), Expect = 1.590e-132
Identity = 204/437 (46.68%), Postives = 286/437 (65.45%), Query Frame = 0
Query:    8 KNRTILTAIPSPPSDFINISSENQKAGQYVFGQSGFVPDASINNSGLFAKRLDG-AAEEIILGFLSIIMIMTITELVLTILSSKRHNQEPEQSDFAHVALKVDGLLHFNGKWMSCRQNWLPSRRRDKEIIMTLFAVLVAALIFVMDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVTPVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHIVSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMILEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLETTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPGLIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWD 443
            KN T+LT IP PP  F+ +  E+Q  GQYV GQS F  +  IN      +++ G AAE  ++G LS  MI  IT+LVLT LS +R + + E++++A+ A++VD  L  + +    R+ W     R K+  +    ++++ +IF++D+  +ILTQP    S+   YNLKG+HPI  +   G+  R+  +E PC+TPVFS SNP RNFS+SAC    LE AH + TD VN+++IGSWFH+GG DHIV+FGNA+I IKTR  +YG   GTRR+LF +L+E YL    YLH++V+Y I+EESC AK+ T+ C+EV+ EHRS +    RT+ LWTTR GK K+ V GLE+ L   I++PW TVF++VGPL+T E + EV G G YSHISTE     + GL+V E R LG+ G++L    L   L    ++ RPV+L+ +AWD
Sbjct:    3 KNGTVLTTIPEPPPKFVQVLPESQLPGQYVIGQSSFTSNPDINRPFFLVQKVGGSAAEAFVVGLLSTWMITVITKLVLTCLSRER-SIDDEENEYAYAAVRVDEFLRKSRREALRRKGWPRGVYRKKKACLIQMVLVISVVIFLIDICTIILTQPRISVSKPGDYNLKGTHPIAADREEGEEFRKTVIETPCITPVFSSSNPSRNFSISACTIFGLEEAHTRVTDTVNTIRIGSWFHEGGGDHIVTFGNATIRIKTRLFLYGVENGTRRILFSMLYEDYLPAIKYLHELVMYGIMEESCTAKYATRTCDEVLKEHRSESTPANRTVVLWTTRKGKRKETVVGLESNLFLEISQPWATVFRNVGPLLTGEQVTEVDGPGSYSHISTENREQNLHGLLVQETRYLGMFGLILADSVLSAFLICATKLCRPVFLSHKAWD 438          
BLAST of Gcaud3765.t1 vs. uniprot
Match: A0A2V3IY15_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY15_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 9.130e-112
Identity = 183/384 (47.66%), Postives = 251/384 (65.36%), Query Frame = 0
Query:   83 VLTILSSKRHNQEPEQSDFAHVALKVDGLLHFNGKWMSCRQNWLPS--RRRDKEIIMTLFAVLVAALIFVMDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVTPVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHIVSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMILEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLETTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPGLIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWDNFERTVLNRFDFEHRNSSGST 464
            +LT LS +R + + E++++A+ A++VD  L  N +    R+ W  S   R+   +++T+ A+    L+FVM+  A++ TQP    S+   YNLKG+HPI    G  KFLRR   ERPC+TPVFS SNP RNFS+SAC    LE AH + TD VN++KIGSWFH+GG DHI++FGNA I IKT+ ++YG  GGTRRLLF +L+E YL    YLH++V+Y I+EE+C AK+ T+ C+EV+ EHRS +    RT+ +WTTR  K K+ V GLET L   INKPW+TVFK VGPL+TAE + EV G G YSH  T E    + GL+V E R LGV GM L  + L+  L  L +  +P+ L+ +AWD FE    +    E++ +  S+
Sbjct:    1 MLTCLSHER-SIDDEENEYAYAAVRVDEFLQLNVERALRREGWPRSVEPRQKPYLLVTVLAM--GILMFVMNAVAILCTQPRISVSKPGDYNLKGTHPIAAGHGNAKFLRRIGRERPCITPVFSSSNPSRNFSISACTIFGLEEAHTRDTDTVNTIKIGSWFHEGGGDHIITFGNARITIKTKLLLYGVAGGTRRLLFSMLYEDYLPAVRYLHELVMYGIMEETCTAKYATRTCDEVLKEHRSESTPTNRTVVVWTTRKEKRKETVVGLETNLFLEINKPWVTVFKRVGPLLTAEQVTEVKGPGCYSHTETGEREQNLHGLLVQETRFLGVFGMTLADVVLLGVLLCLTKFCQPLSLSQKAWDLFENRYTSDASTENKPADESS 381          
The following BLAST results are available for this feature:
BLAST of Gcaud3765.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYD1_9FLOR4.360e-15352.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IZE0_9FLOR1.590e-13246.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IY15_9FLOR9.130e-11247.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 429..483
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 159..408
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 409..428
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..158
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 409..428
NoneNo IPR availableTMHMMTMhelixcoord: 66..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:19978..21429 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3765.t1Gcaud3765.t1Gracilaria caudata M_176_S67 malemRNANODE_94_length_52825_cov_4.981075 19978..21429 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=484bp
MVGYLSAKNRTILTAIPSPPSDFINISSENQKAGQYVFGQSGFVPDASIN
NSGLFAKRLDGAAEEIILGFLSIIMIMTITELVLTILSSKRHNQEPEQSD
FAHVALKVDGLLHFNGKWMSCRQNWLPSRRRDKEIIMTLFAVLVAALIFV
MDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVT
PVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHI
VSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMI
LEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLE
TTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPG
LIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWDNFERTVL
NRFDFEHRNSSGSTIFGKEGSSDGCLQSCPIKG*
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