Gcaud3765.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3765.t1
Unique Name	Gcaud3765.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_94_length_52825_cov_4.981075	contig	NODE_94_length_52825_cov_4.981075:19978..21429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3765	Gcaud3765	Gracilaria caudata M_176_S67 male	gene	NODE_94_length_52825_cov_4.981075 19978..21429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3765.t1.start1	Gcaud3765.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_94_length_52825_cov_4.981075 19978..19980 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3765.t1.CDS1	Gcaud3765.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_94_length_52825_cov_4.981075 19978..21429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3765.t1.exon1	Gcaud3765.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_94_length_52825_cov_4.981075 19978..21429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3765.t1.stop1	Gcaud3765.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_94_length_52825_cov_4.981075 21427..21429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3765.t1	Gcaud3765.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_94_length_52825_cov_4.981075 19978..21429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+
coding sequence from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+

mRNA sequence

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=484bp
MVGYLSAKNRTILTAIPSPPSDFINISSENQKAGQYVFGQSGFVPDASIN
NSGLFAKRLDGAAEEIILGFLSIIMIMTITELVLTILSSKRHNQEPEQSD
FAHVALKVDGLLHFNGKWMSCRQNWLPSRRRDKEIIMTLFAVLVAALIFV
MDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVT
PVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHI
VSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMI
LEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLE
TTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPG
LIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWDNFERTVL
NRFDFEHRNSSGSTIFGKEGSSDGCLQSCPIKG*

spliced messenger RNA

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGTTATCTGTCAGCGAAGAATCGCACAATTCTCACAGCTATTCC
TTCGCCACCGTCGGATTTCATAAACATATCTAGCGAGAATCAAAAGGCAG
GACAATATGTCTTCGGCCAAAGCGGGTTTGTCCCCGATGCCTCTATCAAT
AACTCCGGACTTTTTGCGAAAAGACTTGACGGAGCCGCAGAAGAAATAAT
CTTGGGATTCCTTTCGATTATAATGATAATGACGATTACTGAGCTCGTAT
TAACTATTCTCTCGAGCAAGCGACACAACCAAGAACCTGAGCAAAGCGAT
TTCGCACATGTTGCTCTCAAGGTGGATGGATTGCTACACTTTAACGGGAA
ATGGATGAGTTGCCGACAAAATTGGCTGCCGTCTCGCAGACGAGACAAGG
AGATAATCATGACACTGTTTGCCGTACTGGTTGCCGCTCTCATATTCGTC
ATGGACATGGGGGCCGTTATTTTAACTCAACCGAATCACTTCCCAAGCCA
GCAGTATTCTTACAACTTGAAAGGAAGCCATCCCATCGGTACCGAGTTTG
GTTTGGGAAAGTTTTTGCGTAGGAATGCGATGGAGCGCCCATGTGTCACT
CCAGTCTTTTCAGAATCGAATCCCTTTCGGAACTTTTCGCTCAGCGCGTG
CCACACTCTCAATCTCGAAGTAGCCCACAAGAAGACCACAGACATTGTGA
ACTCTGTGAAGATAGGTTCATGGTTCCACAAAGGCGGCAGCGACCATATT
GTATCTTTTGGGAATGCCAGTATTGAAATCAAGACACGAGCTATTGTCTA
CGGAGCGAGAGGTGGGACGAGGAGACTACTCTTCCCTGTCTTGCACGAAA
GCTACTTGGCGTTCACACACTACTTGCATCAAGTTGTGATTTATATGATT
TTGGAAGAAAGCTGCAATGCCAAGCACAAGACAAAAAACTGTGAAGAAGT
TGTTGCGGAGCACAGAAGCGTAGCGGAAACGGTCACGAGAACAATTGGCT
TGTGGACAACAAGGAGTGGTAAAGTAAAGAAAGAAGTACAAGGCTTGGAA
ACTACGTTAACTTTTGGTATTAACAAACCTTGGATAACAGTGTTTAAGAG
TGTGGGACCACTGATGACTGCTGAGCTCATTGAAGAAGTCGGAGGTCGTG
GTTTGTACTCTCATATTTCAACTGAGGAAGAAAATGATGGTATTCCAGGT
CTCATTGTTGATGAACGGAGGCCGTTGGGAGTACTTGGGATGCTTCTCGG
AACAATGTGCCTCGTATTGGCTCTATTTACGTTGAAGCGAATCCTACGTC
CTGTTTATCTTGCTGATCGCGCGTGGGACAACTTTGAGAGAACCGTTCTG
AATAGGTTTGACTTTGAGCACAGGAACTCGTCTGGTTCCACTATTTTTGG
AAAAGAGGGCAGCTCCGATGGCTGCCTGCAGAGTTGTCCCATCAAAGGTT
AG

protein sequence of Gcaud3765.t1

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=484bp
MVGYLSAKNRTILTAIPSPPSDFINISSENQKAGQYVFGQSGFVPDASIN
NSGLFAKRLDGAAEEIILGFLSIIMIMTITELVLTILSSKRHNQEPEQSD
FAHVALKVDGLLHFNGKWMSCRQNWLPSRRRDKEIIMTLFAVLVAALIFV
MDMGAVILTQPNHFPSQQYSYNLKGSHPIGTEFGLGKFLRRNAMERPCVT
PVFSESNPFRNFSLSACHTLNLEVAHKKTTDIVNSVKIGSWFHKGGSDHI
VSFGNASIEIKTRAIVYGARGGTRRLLFPVLHESYLAFTHYLHQVVIYMI
LEESCNAKHKTKNCEEVVAEHRSVAETVTRTIGLWTTRSGKVKKEVQGLE
TTLTFGINKPWITVFKSVGPLMTAELIEEVGGRGLYSHISTEEENDGIPG
LIVDERRPLGVLGMLLGTMCLVLALFTLKRILRPVYLADRAWDNFERTVL
NRFDFEHRNSSGSTIFGKEGSSDGCLQSCPIKG*

mRNA from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+ (Gracilaria caudata M_176_S67 male)
ATGGTGGGTTATCTGTCAGCGAAGAATCGCACAATTCTCACAGCTATTCC
TTCGCCACCGTCGGATTTCATAAACATATCTAGCGAGAATCAAAAGGCAG
GACAATATGTCTTCGGCCAAAGCGGGTTTGTCCCCGATGCCTCTATCAAT
AACTCCGGACTTTTTGCGAAAAGACTTGACGGAGCCGCAGAAGAAATAAT
CTTGGGATTCCTTTCGATTATAATGATAATGACGATTACTGAGCTCGTAT
TAACTATTCTCTCGAGCAAGCGACACAACCAAGAACCTGAGCAAAGCGAT
TTCGCACATGTTGCTCTCAAGGTGGATGGATTGCTACACTTTAACGGGAA
ATGGATGAGTTGCCGACAAAATTGGCTGCCGTCTCGCAGACGAGACAAGG
AGATAATCATGACACTGTTTGCCGTACTGGTTGCCGCTCTCATATTCGTC
ATGGACATGGGGGCCGTTATTTTAACTCAACCGAATCACTTCCCAAGCCA
GCAGTATTCTTACAACTTGAAAGGAAGCCATCCCATCGGTACCGAGTTTG
GTTTGGGAAAGTTTTTGCGTAGGAATGCGATGGAGCGCCCATGTGTCACT
CCAGTCTTTTCAGAATCGAATCCCTTTCGGAACTTTTCGCTCAGCGCGTG
CCACACTCTCAATCTCGAAGTAGCCCACAAGAAGACCACAGACATTGTGA
ACTCTGTGAAGATAGGTTCATGGTTCCACAAAGGCGGCAGCGACCATATT
GTATCTTTTGGGAATGCCAGTATTGAAATCAAGACACGAGCTATTGTCTA
CGGAGCGAGAGGTGGGACGAGGAGACTACTCTTCCCTGTCTTGCACGAAA
GCTACTTGGCGTTCACACACTACTTGCATCAAGTTGTGATTTATATGATT
TTGGAAGAAAGCTGCAATGCCAAGCACAAGACAAAAAACTGTGAAGAAGT
TGTTGCGGAGCACAGAAGCGTAGCGGAAACGGTCACGAGAACAATTGGCT
TGTGGACAACAAGGAGTGGTAAAGTAAAGAAAGAAGTACAAGGCTTGGAA
ACTACGTTAACTTTTGGTATTAACAAACCTTGGATAACAGTGTTTAAGAG
TGTGGGACCACTGATGACTGCTGAGCTCATTGAAGAAGTCGGAGGTCGTG
GTTTGTACTCTCATATTTCAACTGAGGAAGAAAATGATGGTATTCCAGGT
CTCATTGTTGATGAACGGAGGCCGTTGGGAGTACTTGGGATGCTTCTCGG
AACAATGTGCCTCGTATTGGCTCTATTTACGTTGAAGCGAATCCTACGTC
CTGTTTATCTTGCTGATCGCGCGTGGGACAACTTTGAGAGAACCGTTCTG
AATAGGTTTGACTTTGAGCACAGGAACTCGTCTGGTTCCACTATTTTTGG
AAAAGAGGGCAGCTCCGATGGCTGCCTGCAGAGTTGTCCCATCAAAGGTT
AG

Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+

>Gcaud3765.t1 ID=Gcaud3765.t1|Name=Gcaud3765.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1452bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:19978..21429+ (Gracilaria caudata M_176_S67 male)
ATGGTGGGTTATCTGTCAGCGAAGAATCGCACAATTCTCACAGCTATTCC
TTCGCCACCGTCGGATTTCATAAACATATCTAGCGAGAATCAAAAGGCAG
GACAATATGTCTTCGGCCAAAGCGGGTTTGTCCCCGATGCCTCTATCAAT
AACTCCGGACTTTTTGCGAAAAGACTTGACGGAGCCGCAGAAGAAATAAT
CTTGGGATTCCTTTCGATTATAATGATAATGACGATTACTGAGCTCGTAT
TAACTATTCTCTCGAGCAAGCGACACAACCAAGAACCTGAGCAAAGCGAT
TTCGCACATGTTGCTCTCAAGGTGGATGGATTGCTACACTTTAACGGGAA
ATGGATGAGTTGCCGACAAAATTGGCTGCCGTCTCGCAGACGAGACAAGG
AGATAATCATGACACTGTTTGCCGTACTGGTTGCCGCTCTCATATTCGTC
ATGGACATGGGGGCCGTTATTTTAACTCAACCGAATCACTTCCCAAGCCA
GCAGTATTCTTACAACTTGAAAGGAAGCCATCCCATCGGTACCGAGTTTG
GTTTGGGAAAGTTTTTGCGTAGGAATGCGATGGAGCGCCCATGTGTCACT
CCAGTCTTTTCAGAATCGAATCCCTTTCGGAACTTTTCGCTCAGCGCGTG
CCACACTCTCAATCTCGAAGTAGCCCACAAGAAGACCACAGACATTGTGA
ACTCTGTGAAGATAGGTTCATGGTTCCACAAAGGCGGCAGCGACCATATT
GTATCTTTTGGGAATGCCAGTATTGAAATCAAGACACGAGCTATTGTCTA
CGGAGCGAGAGGTGGGACGAGGAGACTACTCTTCCCTGTCTTGCACGAAA
GCTACTTGGCGTTCACACACTACTTGCATCAAGTTGTGATTTATATGATT
TTGGAAGAAAGCTGCAATGCCAAGCACAAGACAAAAAACTGTGAAGAAGT
TGTTGCGGAGCACAGAAGCGTAGCGGAAACGGTCACGAGAACAATTGGCT
TGTGGACAACAAGGAGTGGTAAAGTAAAGAAAGAAGTACAAGGCTTGGAA
ACTACGTTAACTTTTGGTATTAACAAACCTTGGATAACAGTGTTTAAGAG
TGTGGGACCACTGATGACTGCTGAGCTCATTGAAGAAGTCGGAGGTCGTG
GTTTGTACTCTCATATTTCAACTGAGGAAGAAAATGATGGTATTCCAGGT
CTCATTGTTGATGAACGGAGGCCGTTGGGAGTACTTGGGATGCTTCTCGG
AACAATGTGCCTCGTATTGGCTCTATTTACGTTGAAGCGAATCCTACGTC
CTGTTTATCTTGCTGATCGCGCGTGGGACAACTTTGAGAGAACCGTTCTG
AATAGGTTTGACTTTGAGCACAGGAACTCGTCTGGTTCCACTATTTTTGG
AAAAGAGGGCAGCTCCGATGGCTGCCTGCAGAGTTGTCCCATCAAAGGTT
AG