Gcaud3755.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3755.t1
Unique NameGcaud3755.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length244
Homology
BLAST of Gcaud3755.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 112 bits (280), Expect = 1.330e-26
Identity = 79/232 (34.05%), Postives = 118/232 (50.86%), Query Frame = 0
Query:   16 AFCQAAAIDGAHELLNSVENALNT-EENQQIIDEAIEYGRRNYPTCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMAGAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGLQYCMVEFERSPQAVNQIIIMGDGQTNFGD-NYPFGAPYLARHFRSH-NNRITAALVGEGNFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC 244
            A C A   +   E LNS    L T   N+  ID A+E        C PN+CFA+DGS SI+ +E+  Q  FV   T  L      +G  ++A+QY +  + +S  T++      FL +V  ++ + S  TFIAPG+  CM +F R     N+II++GDG++ F   + P   P +A  F +  NN I A  V     E  +++ G D  +V     W S+V++L D V+ VC
Sbjct:   14 AVCFAVVPEARIEALNS---PLTTGAANRAQIDRALEIVEET--GCEPNLCFAIDGSSSITDDEFQLQLDFVALITG-LVSLDEQSG--YSAIQYGLRPKFMSRFTQDAA---AFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITG-DPDRVFSVADWMSVVDVLADLVEQVC 233          
BLAST of Gcaud3755.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 90.1 bits (222), Expect = 5.440e-18
Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = 0
Query:   59 TCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMAGAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGLQYCMVEFERSPQAVNQ-IIIMGDGQTNFGDNYPFGAPYLARHFRSHNNRITAALVGEGNF---EFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC 244
            +C  ++CFALDGSGSIS+EEY  QK  V      +A     A A F+AVQY +  E IS  T +   P+ F+  V NS  + +  TF+  GL +C+ +   +P+A  + ++++GDG+ N+ ++       LA   +S  + +    VG GN    +   ++ GG ++ V     +  +  ++ D V A+C
Sbjct:   77 SCDISLCFALDGSGSISAEEYQVQKDLV----KLIAILAAPANATFSAVQYGLANEFISVSTSD---PFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDNYMESS------LALVLKSAES-VDIFAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALC 252          
BLAST of Gcaud3755.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 71.6 bits (174), Expect = 2.630e-11
Identity = 73/247 (29.55%), Postives = 111/247 (44.94%), Query Frame = 0
Query:    5 LFTVALFVSVLAFCQAAA--IDGAHELLNSVENALNTEENQQI-IDEAIEYGRRNYPTCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMAGAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGLQYCMVEFERSPQAVNQ-IIIMGDGQTNFGDNYPFGAPYLARHFRSHNNRITAALVGEG---NFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC 244
            LF  AL +++ + C A    +  A  LL     A +   N  + + + +  GRR    C   +CFALDGSGSIS  ++  Q+  V      LA      GA F+AVQY +    IS  T    P   F   V +S    +  TFI  GL +C+   +  P+   + I+++GDG++NF   +    P +     S  N I  + VG G   N     D+ G   S++    R++ I  I+   V  +C
Sbjct:   11 LFLAALILTLGSVCDAQPNLVRKARALLRGNRLAQSVGVNGIVRLFKEVNRGRR----CNMRLCFALDGSGSISPVQFKVQQDLV----KLLASVAREGGATFSAVQYGLSNTAISTPTGNA-PK--FRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNF---FTLALPLVL----STLNDIQISAVGIGFPRNSRTLLDITGS-RSRLCAVNRYSDIRRIVFKLVRGLC 238          
BLAST of Gcaud3755.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 3.420e-10
Identity = 53/187 (28.34%), Postives = 83/187 (44.39%), Query Frame = 0
Query:   60 CRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMAGAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVAN-SQGMGSSYTFIAPGLQYCMVEFERSPQAVNQIIIMGDG-QTNFGDNYPFGAPYLARHFRSHNNRITAALVGEGNFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC 244
            C  N+CFALDGS S++  +Y  QK FV   ++ L     +  + F+AVQY      ISPLT+ +   +      +N S   GSS   I  G+ YC  +         +II+ GDG +T+  D     A +   H    N R++   VG  N    K +      ++     +   ++++ D    VC
Sbjct:   44 CNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLD--FEVENSSFSAVQYGDQVSPISPLTQSI-DDFNLKVHASNISAFQGSS---IGKGITYCSNQLLELADNPVKIIVFGDGRETSKTDAVSIAASFKDFH---PNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVC 221          
The following BLAST results are available for this feature:
BLAST of Gcaud3755.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ISA4_9FLOR1.330e-2634.05VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q5C2_CHOCR5.440e-1831.58VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q3A9_CHOCR2.630e-1129.55VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3ID60_9FLOR3.420e-1028.34Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..244
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableCDDcd00198vWFAcoord: 63..221
e-value: 8.70425E-11
score: 56.8054
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 61..244
e-value: 1.5E-4
score: 31.1
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 63..206
e-value: 1.8E-7
score: 31.6
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 63..243
score: 10.235254
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 54..244
e-value: 2.7E-16
score: 61.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 58..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6932_length_1044_cov_12.099685contigNODE_6932_length_1044_cov_12.099685:313..1044 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3755.t1Gcaud3755.t1Gracilaria caudata M_176_S67 malemRNANODE_6932_length_1044_cov_12.099685 313..1044 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=244bp
MMTRLFTVALFVSVLAFCQAAAIDGAHELLNSVENALNTEENQQIIDEAI
EYGRRNYPTCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMA
GAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGL
QYCMVEFERSPQAVNQIIIMGDGQTNFGDNYPFGAPYLARHFRSHNNRIT
AALVGEGNFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf