Gcaud3755.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3755.t1
Unique NameGcaud3755.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6932_length_1044_cov_12.099685contigNODE_6932_length_1044_cov_12.099685:313..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3755Gcaud3755Gracilaria caudata M_176_S67 malegeneNODE_6932_length_1044_cov_12.099685 313..1044 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3755.t1.start1Gcaud3755.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6932_length_1044_cov_12.099685 313..315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3755.t1.CDS1Gcaud3755.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6932_length_1044_cov_12.099685 313..1044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3755.t1.exon1Gcaud3755.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6932_length_1044_cov_12.099685 313..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3755.t1Gcaud3755.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6932_length_1044_cov_12.099685 313..1044 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=244bp
MMTRLFTVALFVSVLAFCQAAAIDGAHELLNSVENALNTEENQQIIDEAI
EYGRRNYPTCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMA
GAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGL
QYCMVEFERSPQAVNQIIIMGDGQTNFGDNYPFGAPYLARHFRSHNNRIT
AALVGEGNFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC
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spliced messenger RNA

>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp|location=Sequence derived from alignment at NODE_6932_length_1044_cov_12.099685:313..1044+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACTCGCCTATTCACAGTGGCTCTCTTCGTATCCGTACTCGCATT
CTGCCAGGCGGCGGCGATAGATGGAGCCCACGAGTTATTGAATTCTGTTG
AAAACGCTCTCAACACTGAAGAGAACCAACAAATTATCGACGAAGCCATT
GAGTACGGTCGCCGAAACTACCCAACCTGTCGTCCCAACATATGCTTTGC
TCTCGATGGAAGTGGCTCCATCTCATCAGAAGAGTATGCCGCTCAAAAGG
GATTTGTTATGACGGCCACCAGTACGTTGGCAGGTTTCACAAATATGGCC
GGCGCTGAATTTGCTGCCGTTCAGTACGCCGTTCTCACTGAGCAGATCAG
CCCACTCACGAGAGAGCTGTTCCCGCCGTATGGTTTCCTTGGCAGAGTGG
CAAATTCGCAAGGAATGGGCTCCAGCTATACCTTCATTGCTCCCGGCCTT
CAGTACTGCATGGTCGAGTTCGAGAGAAGTCCGCAGGCTGTGAACCAGAT
TATCATAATGGGCGACGGACAGACTAACTTTGGTGACAACTACCCGTTCG
GTGCTCCGTATCTGGCCAGGCACTTCCGCAGCCACAACAACAGAATTACA
GCTGCGTTGGTTGGTGAAGGAAACTTCGAGTTCTTCAAGGACCTGGTCGG
TGGGGACGAGTCGAAGGTCCTCCGAACTCCGCGGTGGAACTCAATCGTCA
ACATTCTGAGAGACTTTGTGGATGCTGTGTGC
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protein sequence of Gcaud3755.t1

>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=244bp
MMTRLFTVALFVSVLAFCQAAAIDGAHELLNSVENALNTEENQQIIDEAI
EYGRRNYPTCRPNICFALDGSGSISSEEYAAQKGFVMTATSTLAGFTNMA
GAEFAAVQYAVLTEQISPLTRELFPPYGFLGRVANSQGMGSSYTFIAPGL
QYCMVEFERSPQAVNQIIIMGDGQTNFGDNYPFGAPYLARHFRSHNNRIT
AALVGEGNFEFFKDLVGGDESKVLRTPRWNSIVNILRDFVDAVC
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mRNA from alignment at NODE_6932_length_1044_cov_12.099685:313..1044+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp|location=Sequence derived from alignment at NODE_6932_length_1044_cov_12.099685:313..1044+ (Gracilaria caudata M_176_S67 male)
ATGATGACTCGCCTATTCACAGTGGCTCTCTTCGTATCCGTACTCGCATT
CTGCCAGGCGGCGGCGATAGATGGAGCCCACGAGTTATTGAATTCTGTTG
AAAACGCTCTCAACACTGAAGAGAACCAACAAATTATCGACGAAGCCATT
GAGTACGGTCGCCGAAACTACCCAACCTGTCGTCCCAACATATGCTTTGC
TCTCGATGGAAGTGGCTCCATCTCATCAGAAGAGTATGCCGCTCAAAAGG
GATTTGTTATGACGGCCACCAGTACGTTGGCAGGTTTCACAAATATGGCC
GGCGCTGAATTTGCTGCCGTTCAGTACGCCGTTCTCACTGAGCAGATCAG
CCCACTCACGAGAGAGCTGTTCCCGCCGTATGGTTTCCTTGGCAGAGTGG
CAAATTCGCAAGGAATGGGCTCCAGCTATACCTTCATTGCTCCCGGCCTT
CAGTACTGCATGGTCGAGTTCGAGAGAAGTCCGCAGGCTGTGAACCAGAT
TATCATAATGGGCGACGGACAGACTAACTTTGGTGACAACTACCCGTTCG
GTGCTCCGTATCTGGCCAGGCACTTCCGCAGCCACAACAACAGAATTACA
GCTGCGTTGGTTGGTGAAGGAAACTTCGAGTTCTTCAAGGACCTGGTCGG
TGGGGACGAGTCGAAGGTCCTCCGAACTCCGCGGTGGAACTCAATCGTCA
ACATTCTGAGAGACTTTGTGGATGCTGTGTGC
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Coding sequence (CDS) from alignment at NODE_6932_length_1044_cov_12.099685:313..1044+

>Gcaud3755.t1 ID=Gcaud3755.t1|Name=Gcaud3755.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=732bp|location=Sequence derived from alignment at NODE_6932_length_1044_cov_12.099685:313..1044+ (Gracilaria caudata M_176_S67 male)
ATGATGACTCGCCTATTCACAGTGGCTCTCTTCGTATCCGTACTCGCATT
CTGCCAGGCGGCGGCGATAGATGGAGCCCACGAGTTATTGAATTCTGTTG
AAAACGCTCTCAACACTGAAGAGAACCAACAAATTATCGACGAAGCCATT
GAGTACGGTCGCCGAAACTACCCAACCTGTCGTCCCAACATATGCTTTGC
TCTCGATGGAAGTGGCTCCATCTCATCAGAAGAGTATGCCGCTCAAAAGG
GATTTGTTATGACGGCCACCAGTACGTTGGCAGGTTTCACAAATATGGCC
GGCGCTGAATTTGCTGCCGTTCAGTACGCCGTTCTCACTGAGCAGATCAG
CCCACTCACGAGAGAGCTGTTCCCGCCGTATGGTTTCCTTGGCAGAGTGG
CAAATTCGCAAGGAATGGGCTCCAGCTATACCTTCATTGCTCCCGGCCTT
CAGTACTGCATGGTCGAGTTCGAGAGAAGTCCGCAGGCTGTGAACCAGAT
TATCATAATGGGCGACGGACAGACTAACTTTGGTGACAACTACCCGTTCG
GTGCTCCGTATCTGGCCAGGCACTTCCGCAGCCACAACAACAGAATTACA
GCTGCGTTGGTTGGTGAAGGAAACTTCGAGTTCTTCAAGGACCTGGTCGG
TGGGGACGAGTCGAAGGTCCTCCGAACTCCGCGGTGGAACTCAATCGTCA
ACATTCTGAGAGACTTTGTGGATGCTGTGTGC
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