Gcaud3583.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3583.t1
Unique NameGcaud3583.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Homology
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A2V3J547_9FLOR (Small nuclear ribonucleoprotein-associated protein B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J547_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 4.780e-84
Identity = 144/205 (70.24%), Postives = 158/205 (77.07%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVERAPPGRGEAMRALAGPAPGLGGPAQPQLAAQPRMYAP------------PPYGRGVPAXXXXXXXXXXSYAPPPPTGAVAMGGVTDVMVNNGRPMGYGRGAPPPSG 193
            MSLSKNS+MLQFINYRVRVTLDDRRTLVGRFLAFDKHMN+VLSDCEEFRK KKTQKD+RRALGL+LLRGE VVSMAVE+ PAPKKGKR+ATAAGLPV +RA PGRGE M AL  PA GLGGPAQPQL+AQPRMYAP            PPYGRGV           X+ A PPP G      +TDV ++ GR M +GRG PPP+G
Sbjct:    1 MSLSKNSRMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNIVLSDCEEFRKAKKTQKDERRALGLLLLRGECVVSMAVENAPAPKKGKRTATAAGLPVADRAAPGRGEVMAALNAPAQGLGGPAQPQLSAQPRMYAPLPGAYPGSGVAPPPYGRGV------LPAAYXTAAAPPPRG------MTDVAMSGGRGMPFGRGVPPPNG 193          
BLAST of Gcaud3583.t1 vs. uniprot
Match: R7QDE4_CHOCR (Sm protein, snRNP core protein, SmB n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDE4_CHOCR)

HSP 1 Score: 206 bits (525), Expect = 1.030e-64
Identity = 111/150 (74.00%), Postives = 127/150 (84.67%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVV--ERAPPGRGEAMRALAGPAPGLGGPA----QPQLAAQPRMYAPPPYGRGVP 144
            MSL+K+SKMLQFINYR+R+TLDDRRTLVGRFLAFDKHMNVVL+DCEEFRK KK + ++RRALGL+LLRGESVVS+AVESPPAPKKGKRSATAAGL       +P GRG A   LAGPAPGLGG +    QPQL++ P++Y PPPYGRG P
Sbjct:    1 MSLTKSSKMLQFINYRMRITLDDRRTLVGRFLAFDKHMNVVLADCEEFRKAKKAETEERRALGLVLLRGESVVSIAVESPPAPKKGKRSATAAGLTAQPDRPSPMGRGMAAPGLAGPAPGLGGGSLAAMQPQLSSNPQLYQPPPYGRGGP 150          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A0D3DF66_BRAOL (Small nuclear ribonucleoprotein-associated protein n=3 Tax=Brassica TaxID=3705 RepID=A0A0D3DF66_BRAOL)

HSP 1 Score: 140 bits (354), Expect = 3.550e-38
Identity = 96/213 (45.07%), Postives = 120/213 (56.34%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK--PKKTQK-----DQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVERAPPGRG-------------EAMRALAGPAPGLGGPA----QPQLAAQP------RMYAPPPYGRGVPAXXXXXXXXXXSYAPPPPTGAVAMGGVTDVMVNNGRPMG 183
            MS+SK+SKMLQFINYR+RVT+ D R L+G+F+AFD+HMN+VL DCEEFRK  P K +K     + RR LGL+LLRGE V+S+ VE PP P++ +  A  +G  V   A PG G             +A   LAGP  G+GGPA    QPQ++  P      +M  PPP GRG+P              PPPP G     G         RPMG
Sbjct:    1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEVISITVEGPPPPEESRAKAGGSGGAV---AGPGMGRAAGRGVPTGPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVMRPPGQMLPPPPMGRGLPQ------------GPPPPYGMRPQFGGPXXXXYGQRPMG 198          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A7S0BJ51_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BJ51_9RHOD)

HSP 1 Score: 140 bits (354), Expect = 5.230e-38
Identity = 84/167 (50.30%), Postives = 109/167 (65.27%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAG-LPVVERAPPGRGEAMR--------ALAGPAPGLGGPA----QPQLAAQPRMYA-----------PPPYGRGV 143
            MS+SK+SKMLQ++NYR+RVTLDD R LVG+FLAFDKHMN+VL +CEE++K KK   ++ R+LGLILLRGE VVS+ VESPPA +  ++ ++  G  P     P GRG             L+GP  G+GGPA    QP ++AQP+MY            PP YG G+
Sbjct:   29 MSISKSSKMLQYVNYRMRVTLDDGRMLVGKFLAFDKHMNLVLGNCEEWKKSKKKDTEEMRSLGLILLRGECVVSLTVESPPAEQDSRKRSSGKGPAPQGRGMPAGRGIPQGPPPGAPPVGLSGPVRGVGGPAPTTMQPHVSAQPQMYGGRGGSQMGAPGPPGYGGGM 195          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A7S0E0S6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0E0S6_9CRYP)

HSP 1 Score: 137 bits (344), Expect = 3.710e-37
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = 0
Query:    3 LSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK-----PKKTQKDQRRALGLILLRGESVVSMAVES-PPAPKKGKRSATAAGLPVVERAPPGRG-------EAMRALAGPAPGLGGPAQPQLAAQPR-MYAPPPYGRGVP 144
            ++K+SK+LQ++NYR+RVT++D R LVG+F+AFDKHMN+VL DC+EFR+      K  +++++R+LGL++LRGESVVS+ VES PP+  K  R A   G+     AP GRG       +A   LAGPA G+GGP   Q+A Q R + APP  GRG+P
Sbjct:    5 MTKSSKILQYVNYRMRVTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEEREEKRSLGLVILRGESVVSLTVESKPPSEDKKNRLAAGVGMGPGVAAPGGRGLPMAPVGQAPAGLAGPARGVGGPGMMQMAPQGRGISAPPQMGRGMP 160          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A2I4FNI2_JUGRE (Small nuclear ribonucleoprotein-associated protein n=4 Tax=Fagales TaxID=3502 RepID=A0A2I4FNI2_JUGRE)

HSP 1 Score: 139 bits (349), Expect = 3.750e-37
Identity = 83/156 (53.21%), Postives = 105/156 (67.31%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK-----PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGL---PVVERAPPGRG-------EAMRALAGPAPGLGGPA----QPQLAAQPRMYAPP 137
            MS+SK+SKMLQ+INYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFRK      KKT  + RR LGL+LLRGE V+SM VE PP P++ +  A  A     P + RA  GRG       +A   LAGP  G+GGPA    QPQ  ++P++ APP
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTDNEDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNAAAMAGPGIGRAA-GRGIPTAPLIQAQPGLAGPVRGVGGPAPGMMQPQQMSRPQLSAPP 155          
BLAST of Gcaud3583.t1 vs. uniprot
Match: UPI001C4E8A0F (small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F)

HSP 1 Score: 138 bits (347), Expect = 8.640e-37
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK------PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGL---PVVERAPPGRG-------EAMRALAGPAPGLGGPA----QPQLAAQPRMYAPP 137
            MS+SK+SKMLQ+INYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFRK       K  ++++RR LGL+LLRGE VVSM VE PP P++ +  A  A     P + RA  GRG       +A   LAGP  G+GGPA    QPQ++  P++ APP
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREERRTLGLVLLRGEEVVSMTVEGPPPPEESRAKAVGAAAMAGPGLGRAA-GRGIPTAPLVQAQPGLAGPVRGVGGPASNMMQPQISRPPQLSAPP 156          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A5K0WUU8_9MAGN (Sm domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WUU8_9MAGN)

HSP 1 Score: 137 bits (345), Expect = 1.020e-36
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK--PKKTQK----DQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGL-PVVERAPPGRG-------EAMRALAGPAPGLGGPA----QPQLAAQPRMY---APPP 138
            MS+SK+SKMLQFINYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFR+  P K QK    + RR LGL+LLRGE V+SM VE PP P++ +  +  AG  P + RA  GRG       +A   LAGP  G+GGPA    QPQ++  P  Y   APPP
Sbjct:    1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPVKGQKGEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKSVVAGAGPGIGRAA-GRGVPTAHLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVSYPQPAPPP 158          
BLAST of Gcaud3583.t1 vs. uniprot
Match: A0A4P1RS25_LUPAN (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1RS25_LUPAN)

HSP 1 Score: 137 bits (345), Expect = 1.560e-36
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK--PKKTQK-----DQRRALGLILLRGESVVSMAVESPPAPKKGKRSAT---AAGLPVVERAPPGRG-------EAMRALAGPAPGLGGPA----QPQLAAQPRMYAPP 137
            MS+SK+SKMLQFINYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFRK  P K +K     + RR LGL+LLRGE V+SM VE PP P++ +  A    A G P + RA  GRG       +A   LAGP  G+GGPA    QPQ++  P++ APP
Sbjct:    1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNSAALGGPGLGRAA-GRGIPAAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPP 157          
BLAST of Gcaud3583.t1 vs. uniprot
Match: M2XN13_GALSU (Small nuclear ribonucleoprotein B and B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XN13_GALSU)

HSP 1 Score: 135 bits (340), Expect = 1.700e-36
Identity = 80/156 (51.28%), Postives = 103/156 (66.03%), Query Frame = 0
Query:    1 MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVERAPPGRGEAMR--------ALAGPAPGLGGPAQPQ-LAAQP---RMYAPPPYGRGVP 144
            M++ +NSK+LQ+INYR+RV+LDD+R +VG+ LAFDKH+N+VL+DCEEFRK KK  K+++RALGL+LLRGESV++M VESPP  +  ++ A     P     P GR   M          LAGP  G+GGP  PQ  A  P   R  AP P   GVP
Sbjct:    1 MAVPRNSKLLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKEEKRALGLVLLRGESVITMTVESPPPEQTTRKPAQRGPAPTGRGFPAGRAMPMAPPPAAVPAGLAGPVRGIGGPPPPQGRAVAPTIGRGAAPMPPPPGVP 156          
The following BLAST results are available for this feature:
BLAST of Gcaud3583.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J547_9FLOR4.780e-8470.24Small nuclear ribonucleoprotein-associated protein... [more]
R7QDE4_CHOCR1.030e-6474.00Sm protein, snRNP core protein, SmB n=1 Tax=Chondr... [more]
A0A0D3DF66_BRAOL3.550e-3845.07Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S0BJ51_9RHOD5.230e-3850.30Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0E0S6_9CRYP3.710e-3750.64Hypothetical protein (Fragment) n=2 Tax=Geminigera... [more]
A0A2I4FNI2_JUGRE3.750e-3753.21Small nuclear ribonucleoprotein-associated protein... [more]
UPI001C4E8A0F8.640e-3752.23small nuclear ribonucleoprotein-associated protein... [more]
A0A5K0WUU8_9MAGN1.020e-3654.09Sm domain-containing protein (Fragment) n=2 Tax=Ny... [more]
A0A4P1RS25_LUPAN1.560e-3653.80Small nuclear ribonucleoprotein-associated protein... [more]
M2XN13_GALSU1.700e-3651.28Small nuclear ribonucleoprotein B and B n=1 Tax=Ga... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..77
e-value: 6.8E-22
score: 88.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..76
e-value: 4.9E-20
score: 71.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 3.2E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..164
NoneNo IPR availablePANTHERPTHR10701:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'coord: 1..192
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..192
NoneNo IPR availableCDDcd01717Sm_Bcoord: 5..78
e-value: 6.03164E-44
score: 139.223
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1059_length_14467_cov_3.827977contigNODE_1059_length_14467_cov_3.827977:8706..9495 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1Gcaud3583.t1Gracilaria caudata M_176_S67 malemRNANODE_1059_length_14467_cov_3.827977 8706..9495 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK
PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVER
APPGRGEAMRALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVPAPPFGR
GVPPPSYAPPPPTGAVAMGGVTDVMVNNGRPMGYGRGAPPPSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf