Gcaud3583.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3583.t1
Unique NameGcaud3583.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1059_length_14467_cov_3.827977contigNODE_1059_length_14467_cov_3.827977:8706..9495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo7g107140.1
PFAMsLSM
Max annot lvl35493|Streptophyta
KEGG koko:K11086
KEGG Pathwayko03040,ko05322,map03040,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Evalue6.88e-38
EggNOG OGsCOG1958@1|root,KOG3168@2759|Eukaryota,37J8B@33090|Viridiplantae,3G7D6@35493|Streptophyta,3HQ4R@3699|Brassicales
DescriptionSmall nuclear
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3583Gcaud3583Gracilaria caudata M_176_S67 malegeneNODE_1059_length_14467_cov_3.827977 8706..9495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1Gcaud3583.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1059_length_14467_cov_3.827977 8706..9495 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1.stop1Gcaud3583.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1059_length_14467_cov_3.827977 8706..8708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1.CDS1Gcaud3583.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1059_length_14467_cov_3.827977 8706..8783 -
Gcaud3583.t1.CDS2Gcaud3583.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1059_length_14467_cov_3.827977 8893..9234 -
Gcaud3583.t1.CDS3Gcaud3583.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1059_length_14467_cov_3.827977 9334..9495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1.exon1Gcaud3583.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1059_length_14467_cov_3.827977 8706..8783 -
Gcaud3583.t1.exon2Gcaud3583.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1059_length_14467_cov_3.827977 8893..9234 -
Gcaud3583.t1.exon3Gcaud3583.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1059_length_14467_cov_3.827977 9334..9495 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1.intron1Gcaud3583.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1059_length_14467_cov_3.827977 8784..8892 -
Gcaud3583.t1.intron2Gcaud3583.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1059_length_14467_cov_3.827977 9235..9333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3583.t1.start1Gcaud3583.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1059_length_14467_cov_3.827977 9493..9495 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK
PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVER
APPGRGEAMRALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVPAPPFGR
GVPPPSYAPPPPTGAVAMGGVTDVMVNNGRPMGYGRGAPPPSG*
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spliced messenger RNA

>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_1059_length_14467_cov_3.827977:8706..9495- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCTCAAAGAACAGCAAAATGCTGCAGTTTATAAACTATCGCGT
CAGAGTAACGCTCGACGATCGCCGCACGCTAGTCGGACGCTTTCTAGCCT
TCGACAAACACATGAACGTCGTTCTTTCCGACTGCGAAGAGTTTCGCAAA
CCAAAGAAAACACAAAAGGATCAACGTCGTGCATTAGGGCTCATTCTACT
GCGCGGAGAAAGCGTGGTGTCAATGGCAGTAGAGAGTCCACCCGCGCCTA
AAAAGGGCAAGCGAAGCGCCACTGCTGCCGGTTTGCCCGTTGTGGAACGA
GCGCCACCGGGCCGAGGCGAGGCGATGCGCGCTCTTGCAGGCCCCGCGCC
GGGCCTCGGTGGTCCTGCACAGCCGCAACTGGCCGCTCAGCCGAGGATGT
ACGCTCCGCCACCATACGGACGAGGCGTGCCCGCGCCTCCGTTTGGACGC
GGCGTTCCTCCGCCTTCGTATGCGCCGCCGCCCCCGACCGGTGCCGTTGC
GATGGGGGGAGTGACGGATGTTATGGTGAACAATGGACGACCGATGGGTT
ACGGCAGAGGGGCACCACCTCCGAGTGGATAG
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protein sequence of Gcaud3583.t1

>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MSLSKNSKMLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK
PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPVVER
APPGRGEAMRALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVPAPPFGR
GVPPPSYAPPPPTGAVAMGGVTDVMVNNGRPMGYGRGAPPPSG*
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mRNA from alignment at NODE_1059_length_14467_cov_3.827977:8706..9495-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=790bp|location=Sequence derived from alignment at NODE_1059_length_14467_cov_3.827977:8706..9495- (Gracilaria caudata M_176_S67 male)
ATGTCGCTCTCAAAGAACAGCAAAATGCTGCAGTTTATAAACTATCGCGT
CAGAGTAACGCTCGACGATCGCCGCACGCTAGTCGGACGCTTTCTAGCCT
TCGACAAACACATGAACGTCGTTCTTTCCGACTGCGAAGAGTTTCGCAAA
CCAAAGAAAACAGTAAGTCACCCACCGTACACATCAAAAAAAACCCTCCG
CGCACCTCCACAACAAAAAGAACTAACCACTCAATCGTCTGCTGCTTCAA
AACTCGCACAGCAAAAGGATCAACGTCGTGCATTAGGGCTCATTCTACTG
CGCGGAGAAAGCGTGGTGTCAATGGCAGTAGAGAGTCCACCCGCGCCTAA
AAAGGGCAAGCGAAGCGCCACTGCTGCCGGTTTGCCCGTTGTGGAACGAG
CGCCACCGGGCCGAGGCGAGGCGATGCGCGCTCTTGCAGGCCCCGCGCCG
GGCCTCGGTGGTCCTGCACAGCCGCAACTGGCCGCTCAGCCGAGGATGTA
CGCTCCGCCACCATACGGACGAGGCGTGCCCGCGCCTCCGTTTGGACGCG
GCGTTCCTCCGCCTTCGTATGCGCCGCCGCCCCCGACCGGTGCCGTTGCG
ATGGTAAGTTGCGAGTTCTTTTTTTCTTTCTTGTTGGCCGTTTGATGCGA
GTAGCTTGGGAGCACTGACCATTTGTGAGCTTTGAACGATTGCGTTTTGC
GTTGCGGATTAGGGGGGAGTGACGGATGTTATGGTGAACAATGGACGACC
GATGGGTTACGGCAGAGGGGCACCACCTCCGAGTGGATAG
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Coding sequence (CDS) from alignment at NODE_1059_length_14467_cov_3.827977:8706..9495-

>Gcaud3583.t1 ID=Gcaud3583.t1|Name=Gcaud3583.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_1059_length_14467_cov_3.827977:8706..9495- (Gracilaria caudata M_176_S67 male)
ATGTCGCTCTCAAAGAACAGCAAAATGCTGCAGTTTATAAACTATCGCGT
CAGAGTAACGCTCGACGATCGCCGCACGCTAGTCGGACGCTTTCTAGCCT
TCGACAAACACATGAACGTCGTTCTTTCCGACTGCGAAGAGTTTCGCAAA
CCAAAGAAAACACAAAAGGATCAACGTCGTGCATTAGGGCTCATTCTACT
GCGCGGAGAAAGCGTGGTGTCAATGGCAGTAGAGAGTCCACCCGCGCCTA
AAAAGGGCAAGCGAAGCGCCACTGCTGCCGGTTTGCCCGTTGTGGAACGA
GCGCCACCGGGCCGAGGCGAGGCGATGCGCGCTCTTGCAGGCCCCGCGCC
GGGCCTCGGTGGTCCTGCACAGCCGCAACTGGCCGCTCAGCCGAGGATGT
ACGCTCCGCCACCATACGGACGAGGCGTGCCCGCGCCTCCGTTTGGACGC
GGCGTTCCTCCGCCTTCGTATGCGCCGCCGCCCCCGACCGGTGCCGTTGC
GATGGGGGGAGTGACGGATGTTATGGTGAACAATGGACGACCGATGGGTT
ACGGCAGAGGGGCACCACCTCCGAGTGGATAG
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