Gcaud3549.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3549.t1
Unique NameGcaud3549.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Homology
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A2V3IE70_9FLOR (NifU-like protein 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE70_9FLOR)

HSP 1 Score: 305 bits (782), Expect = 9.970e-104
Identity = 153/177 (86.44%), Postives = 169/177 (95.48%), Query Frame = 0
Query:    1 MVDAQPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            MVD +PK+SPVPTES+PS +S+ILELT  NVE VLDEMRPYLMSDGGNVSIA+IDGATVKLQLEGACG+CPSSTMTMKMGLERRLRE+IPEIE+VIQAEPEGPPL EEGIE TLDEVRPFLNVAGGTI+L+ L+VDSAVPTARLKMTGSGAAINSVKVEITHRLKRN+++LANV+FE
Sbjct:   43 MVDTEPKVSPVPTESSPSQTSDILELTEANVEMVLDEMRPYLMSDGGNVSIAEIDGATVKLQLEGACGTCPSSTMTMKMGLERRLRERIPEIEEVIQAEPEGPPLTEEGIENTLDEVRPFLNVAGGTIQLIDLNVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNWVKLANVVFE 219          
BLAST of Gcaud3549.t1 vs. uniprot
Match: R7QJT2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJT2_CHOCR)

HSP 1 Score: 233 bits (593), Expect = 3.630e-76
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 0
Query:   43 MSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            MSDGGNVS++DIDGATVKLQLEGACGSCPSSTMTMKMGLERRLRE+IPEIE V+Q EP+G PL+EEGIE TLDEVRPFLNVAGGTIEL+ L  DSAVPTARL+MTGSGAAINSVKVEITHRLKRN+++LANV+FE
Sbjct:    1 MSDGGNVSVSDIDGATVKLQLEGACGSCPSSTMTMKMGLERRLRERIPEIEAVVQVEPDGIPLSEEGIEGTLDEVRPFLNVAGGTIELIELLKDSAVPTARLRMTGSGAAINSVKVEITHRLKRNWVKLANVVFE 135          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A1X6PJ05_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ05_PORUM)

HSP 1 Score: 225 bits (573), Expect = 1.630e-72
Identity = 113/163 (69.33%), Postives = 134/163 (82.21%), Query Frame = 0
Query:   15 STPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            S+ +  S +L LT  NVE VLDE+RPYLM+DGGNVS+A+IDGATV+L LEGACGSCPSS MTMKMG+ERRL E IPEIE+V Q EP GPPL  EG+E  L+EVRPFLNVAGG IELV +  DSA+P  RLKM G+GAAINSVK+EIT RLKRN+ +++ V+FE
Sbjct:   16 SSSTSPSSVLPLTLANVETVLDELRPYLMADGGNVSVAEIDGATVRLALEGACGSCPSSMMTMKMGIERRLLEAIPEIEEVCQVEPAGPPLTPEGVEGVLNEVRPFLNVAGGGIELVKMTPDSALPVVRLKMQGTGAAINSVKIEITQRLKRNFPKISQVVFE 178          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A5J4YML6_PORPP (NifU-like protein 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YML6_PORPP)

HSP 1 Score: 223 bits (568), Expect = 4.080e-71
Identity = 116/158 (73.42%), Postives = 135/158 (85.44%), Query Frame = 0
Query:   20 SSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLH-VDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIF 176
            ++E L LT ENVE VLDEMRPYL SDGG+V IADIDGATV+L+L GACG+CPSSTMTMKMGLERRL EKIPEIE V+Q EP+GP L EE ++K L EVRPFLNVAGG+IELVS+  +DSA PT RL MTG+GAAINSVKVEIT RL+RN+ +L+ V+F
Sbjct:   65 TTEKLPLTWENVELVLDEMRPYLKSDGGDVKIADIDGATVRLELVGACGTCPSSTMTMKMGLERRLLEKIPEIEAVVQVEPQGPELVEENVDKVLAEVRPFLNVAGGSIELVSISGIDSAQPTLRLNMTGTGAAINSVKVEITQRLRRNFPKLSQVVF 222          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A7S0NZT0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZT0_9EUKA)

HSP 1 Score: 214 bits (544), Expect = 5.090e-67
Identity = 108/173 (62.43%), Postives = 135/173 (78.03%), Query Frame = 0
Query:    5 QPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            +P +SP    +  +  S  L LT ENVE+VLDEMRPYLM+DGGNV++A+IDG  V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EEG+E  L+E+RPFL +AGG++ELVSL     +PTA L ++GSGA INSV+VEI  RLKRN+  LANV +E
Sbjct:   84 EPVVSPFEVSTVDAPVSGPLPLTLENVERVLDEMRPYLMADGGNVAVAEIDGGIVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEEGVETVLEEIRPFLKMAGGSVELVSLEPTGVLPTACLSISGSGATINSVRVEIAQRLKRNFPSLANVTWE 256          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A7S1TIV8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIV8_9RHOD)

HSP 1 Score: 207 bits (527), Expect = 1.510e-65
Identity = 104/159 (65.41%), Postives = 133/159 (83.65%), Query Frame = 0
Query:   20 SSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLH-VDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            ++E L LT ENVE VLDE+RPYL+SDGGNVSIADIDGA+VKL LEGACG+CPSS MTM+MG+ER+L+E+IPEIE V +  P+GP +NEE IEK L+EVRPFL +AGGT+ LVS++ +++  PT RL+MTG+GAAI SV +EI  RLKRN+ +L+ V F+
Sbjct:   14 TTETLPLTWENVETVLDEVRPYLISDGGNVSIADIDGASVKLTLEGACGTCPSSVMTMRMGIERKLKERIPEIESVEEMIPQGPEINEENIEKVLEEVRPFLRIAGGTLNLVSINGLETPQPTIRLRMTGAGAAIQSVVMEIQQRLKRNFPKLSQVFFD 172          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A7S0LHP7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHP7_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 2.680e-64
Identity = 108/176 (61.36%), Postives = 135/176 (76.70%), Query Frame = 0
Query:    5 QPKISPVPTESTPSDSSEI---LELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            +P +SP   EST S +  +   L LT ENVE VLDEMRPYLM+DGGNV++A+I    V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EEG+E  L+E+RPFL +AGG+++LVSL     +PTA L +TGSGA INSV+VEI  RLKRN+  LANV ++
Sbjct:   38 EPLVSPF--ESTTSSAGPVTGPLPLTLENVELVLDEMRPYLMADGGNVAVAEIADGIVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEEGVEGVLEEIRPFLKMAGGSVDLVSLEATGVLPTACLSITGSGATINSVRVEIAQRLKRNFPSLANVTWD 211          
BLAST of Gcaud3549.t1 vs. uniprot
Match: A0A7S4B135_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B135_CHRCT)

HSP 1 Score: 205 bits (521), Expect = 1.460e-63
Identity = 102/154 (66.23%), Postives = 124/154 (80.52%), Query Frame = 0
Query:   24 LELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIFE 177
            L LT ENVE VLDEMRPYLM+DGGNV++ADIDG  V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EE IE+ L+E+RPFL +AGGT+EL SL     +PT  L+++GSGA INSV+ EI  RLKRN+  LA+V +E
Sbjct:  101 LALTLENVELVLDEMRPYLMADGGNVAVADIDGGVVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEESIEEVLEEIRPFLKMAGGTVELASLEPAGVMPTCSLRISGSGATINSVRAEIAQRLKRNFPTLASVTWE 254          
BLAST of Gcaud3549.t1 vs. uniprot
Match: M2WRR0_GALSU (Iron-sulfur cluster scaffold protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WRR0_GALSU)

HSP 1 Score: 200 bits (508), Expect = 2.770e-62
Identity = 102/171 (59.65%), Postives = 133/171 (77.78%), Query Frame = 0
Query:    5 QPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLH-VDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANV 174
            QP +  +      +DS+  L LT ENVE+VL+E+RPYL++DGGNVS+  IDGATV+L LEGACGSCPSST+T++MG+E RL+EKIPEIE V+Q E  GP LNE+ I+  LDEVRPFL +AGG I+LV ++  DS  P+  LKM+G GAA++SV++EI HRLKRN+ +L NV
Sbjct:   30 QPTVHKIRRLQISADSA--LPLTKENVEQVLEELRPYLIADGGNVSLTGIDGATVRLTLEGACGSCPSSTVTLRMGIETRLKEKIPEIEAVVQEETMGPELNEQNIDSVLDEVRPFLKIAGGKIDLVGIYGTDSPSPSVSLKMSGGGAAVDSVRLEIIHRLKRNFPKLVNV 198          
BLAST of Gcaud3549.t1 vs. uniprot
Match: M1USB3_CYAM1 (Similar to iron-sulfur cluster scaffold protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1USB3_CYAM1)

HSP 1 Score: 197 bits (500), Expect = 6.410e-61
Identity = 97/160 (60.62%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   18 SDSSEILELTHENVEKVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSL-HVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNYIQLANVIF 176
            S +SE L L+  +VE VLDE+RPYLM+DGGNVSI +IDGATV+L+LEGACGSCPSSTMTMKMG+E+RLRE+IPEIE V+  E  G   + EG+E+ LD+VRPFL +AGG+IELVS+ ++D   P   L++ G+GAAI SVKVEI+ R++R + ++A ++F
Sbjct:   54 SATSEPLTLSEASVEVVLDELRPYLMADGGNVSIVEIDGATVRLKLEGACGSCPSSTMTMKMGIEKRLRERIPEIESVVAVEDAGEQPSSEGVEQVLDQVRPFLKIAGGSIELVSMTNIDGPAPVVNLRLMGTGAAIQSVKVEISSRIRRRFPRIAQIVF 213          
The following BLAST results are available for this feature:
BLAST of Gcaud3549.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IE70_9FLOR9.970e-10486.44NifU-like protein 2, chloroplastic n=1 Tax=Gracila... [more]
R7QJT2_CHOCR3.630e-7685.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PJ05_PORUM1.630e-7269.33Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YML6_PORPP4.080e-7173.42NifU-like protein 2, chloroplastic n=1 Tax=Porphyr... [more]
A0A7S0NZT0_9EUKA5.090e-6762.43Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1TIV8_9RHOD1.510e-6565.41Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0LHP7_9EUKA2.680e-6461.36Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4B135_CHRCT1.460e-6366.23Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
M2WRR0_GALSU2.770e-6259.65Iron-sulfur cluster scaffold protein n=1 Tax=Galdi... [more]
M1USB3_CYAM16.410e-6160.63Similar to iron-sulfur cluster scaffold protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 23..101
e-value: 9.6E-31
score: 107.6
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 104..176
e-value: 7.0E-12
score: 47.3
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 28..99
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 105..175
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 31..95
e-value: 1.3E-26
score: 92.5
coord: 110..160
e-value: 1.4E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 20..173
NoneNo IPR availablePANTHERPTHR11178:SF25NIFU-LIKE PROTEIN 3, CHLOROPLASTICcoord: 20..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_237_length_34827_cov_4.750864contigNODE_237_length_34827_cov_4.750864:30763..31296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1Gcaud3549.t1Gracilaria caudata M_176_S67 malemRNANODE_237_length_34827_cov_4.750864 30763..31296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MVDAQPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSG
AAINSVKVEITHRLKRNYIQLANVIFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR001075NIF_FeS_clus_asmbl_NifU_C