Gcaud3549.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3549.t1
Unique NameGcaud3549.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_237_length_34827_cov_4.750864contigNODE_237_length_34827_cov_4.750864:30763..31296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703035.1
Preferred nameNIFU1
PFAMsNifU
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Evalue1.12e-61
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
EC6.1.1.6
DescriptionNFU1 iron-sulfur cluster scaffold
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3549Gcaud3549Gracilaria caudata M_176_S67 malegeneNODE_237_length_34827_cov_4.750864 30763..31296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1.stop1Gcaud3549.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_237_length_34827_cov_4.750864 30763..30765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1.CDS1Gcaud3549.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_237_length_34827_cov_4.750864 30763..31296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1.exon1Gcaud3549.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_237_length_34827_cov_4.750864 30763..31296 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1.start1Gcaud3549.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_237_length_34827_cov_4.750864 31294..31296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3549.t1Gcaud3549.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_237_length_34827_cov_4.750864 30763..31296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MVDAQPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSG
AAINSVKVEITHRLKRNYIQLANVIFE*
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spliced messenger RNA

>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:30763..31296- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGACGCGCAGCCAAAAATCTCGCCAGTTCCCACAGAGTCCACTCC
ATCCGATTCGTCCGAAATCCTGGAACTCACGCACGAAAACGTCGAGAAGG
TGCTTGATGAGATGCGACCTTATCTAATGTCCGATGGGGGAAACGTATCA
ATCGCCGATATCGACGGAGCCACTGTGAAGCTTCAATTAGAAGGCGCATG
TGGTTCGTGTCCGTCGAGCACTATGACCATGAAGATGGGGCTTGAACGAC
GTTTACGCGAGAAAATCCCCGAAATTGAACAGGTGATCCAGGCGGAGCCT
GAAGGGCCCCCTCTCAACGAGGAAGGTATTGAGAAGACCCTTGACGAAGT
CAGACCATTCCTCAACGTCGCAGGCGGTACAATCGAACTGGTTTCTCTCC
ACGTTGACTCGGCCGTACCCACTGCAAGACTCAAGATGACAGGTTCGGGC
GCAGCCATTAACTCAGTTAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATATCCAGCTAGCAAACGTAATATTCGAATAG
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protein sequence of Gcaud3549.t1

>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MVDAQPKISPVPTESTPSDSSEILELTHENVEKVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEGIEKTLDEVRPFLNVAGGTIELVSLHVDSAVPTARLKMTGSG
AAINSVKVEITHRLKRNYIQLANVIFE*
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mRNA from alignment at NODE_237_length_34827_cov_4.750864:30763..31296-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:30763..31296- (Gracilaria caudata M_176_S67 male)
ATGGTTGACGCGCAGCCAAAAATCTCGCCAGTTCCCACAGAGTCCACTCC
ATCCGATTCGTCCGAAATCCTGGAACTCACGCACGAAAACGTCGAGAAGG
TGCTTGATGAGATGCGACCTTATCTAATGTCCGATGGGGGAAACGTATCA
ATCGCCGATATCGACGGAGCCACTGTGAAGCTTCAATTAGAAGGCGCATG
TGGTTCGTGTCCGTCGAGCACTATGACCATGAAGATGGGGCTTGAACGAC
GTTTACGCGAGAAAATCCCCGAAATTGAACAGGTGATCCAGGCGGAGCCT
GAAGGGCCCCCTCTCAACGAGGAAGGTATTGAGAAGACCCTTGACGAAGT
CAGACCATTCCTCAACGTCGCAGGCGGTACAATCGAACTGGTTTCTCTCC
ACGTTGACTCGGCCGTACCCACTGCAAGACTCAAGATGACAGGTTCGGGC
GCAGCCATTAACTCAGTTAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATATCCAGCTAGCAAACGTAATATTCGAATAG
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Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:30763..31296-

>Gcaud3549.t1 ID=Gcaud3549.t1|Name=Gcaud3549.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:30763..31296- (Gracilaria caudata M_176_S67 male)
ATGGTTGACGCGCAGCCAAAAATCTCGCCAGTTCCCACAGAGTCCACTCC
ATCCGATTCGTCCGAAATCCTGGAACTCACGCACGAAAACGTCGAGAAGG
TGCTTGATGAGATGCGACCTTATCTAATGTCCGATGGGGGAAACGTATCA
ATCGCCGATATCGACGGAGCCACTGTGAAGCTTCAATTAGAAGGCGCATG
TGGTTCGTGTCCGTCGAGCACTATGACCATGAAGATGGGGCTTGAACGAC
GTTTACGCGAGAAAATCCCCGAAATTGAACAGGTGATCCAGGCGGAGCCT
GAAGGGCCCCCTCTCAACGAGGAAGGTATTGAGAAGACCCTTGACGAAGT
CAGACCATTCCTCAACGTCGCAGGCGGTACAATCGAACTGGTTTCTCTCC
ACGTTGACTCGGCCGTACCCACTGCAAGACTCAAGATGACAGGTTCGGGC
GCAGCCATTAACTCAGTTAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATATCCAGCTAGCAAACGTAATATTCGAATAG
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