Gcaud3543.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud3543.t1
Unique Name	Gcaud3543.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	158

Homology

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BLAST of Gcaud3543.t1 vs. uniprot
Match: A0A2V3IP89_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP89_9FLOR)

HSP 1 Score: 145 bits (366), Expect = 9.070e-42
Identity = 84/158 (53.16%), Postives = 109/158 (68.99%), Query Frame = 0

Query:    1 MSHSSQNTKVEYADKHETNMAAKMANMWEQRIGSGKIHSAKSHNSSHSTSPSSVVKSSGSEMNREPGLTKAGSEKPFSRTNTEEIVKNFERMASMHKQESRSSVAPAARRTGSVMSATKGGNG---VSKNSIDDMIERIRSRMNEVDKDLRELKSMVS 155
            MSH S +TK EY DKHE  + +K+AN+WE+RIGS  +H A         SPSSVVKSSGSE++R P LT AGS+K F R NT EIVK FERMAS H Q+S S  A  AR+ GS +S  K  N    +SK  I +++++IRSRM EVDKDL +L+++++
Sbjct:    1 MSHPSLHTKAEYGDKHEKPVTSKIANIWERRIGSDVVHDA---------SPSSVVKSSGSEVSRGPNLTSAGSQKAFGRKNTIEIVKEFERMASFHNQQSLSRPASIARKIGSSLSTVKSDNSTVDISKEEIKEIVQKIRSRMTEVDKDLNKLQALIA 149

The following BLAST results are available for this feature:

BLAST of Gcaud3543.t1 vs. uniprot

BLAST of Gcaud3543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IP89_9FLOR	9.070e-42	53.16	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:21177..21829 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3543.t1	Gcaud3543.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_237_length_34827_cov_4.750864 21177..21829 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MSHSSQNTKVEYADKHETNMAAKMANMWEQRIGSGKIHSAKSHNSSHSTS
PSSVVKSSGSEMNREPGLTKAGSEKPFSRTNTEEIVKNFERMASMHKQES
RSSVAPAARRTGSVMSATKGGNGVSKNSIDDMIERIRSRMNEVDKDLREL
KSMVSDL*