Gcaud3543.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3543.t1
Unique NameGcaud3543.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_237_length_34827_cov_4.750864contigNODE_237_length_34827_cov_4.750864:21177..21829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3543Gcaud3543Gracilaria caudata M_176_S67 malegeneNODE_237_length_34827_cov_4.750864 21177..21829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1Gcaud3543.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_237_length_34827_cov_4.750864 21177..21829 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1.stop1Gcaud3543.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_237_length_34827_cov_4.750864 21177..21179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1.CDS1Gcaud3543.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_237_length_34827_cov_4.750864 21177..21388 -
Gcaud3543.t1.CDS2Gcaud3543.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_237_length_34827_cov_4.750864 21463..21696 -
Gcaud3543.t1.CDS3Gcaud3543.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_237_length_34827_cov_4.750864 21802..21829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1.exon1Gcaud3543.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_237_length_34827_cov_4.750864 21177..21388 -
Gcaud3543.t1.exon2Gcaud3543.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_237_length_34827_cov_4.750864 21463..21696 -
Gcaud3543.t1.exon3Gcaud3543.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_237_length_34827_cov_4.750864 21802..21829 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1.intron1Gcaud3543.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_237_length_34827_cov_4.750864 21389..21462 -
Gcaud3543.t1.intron2Gcaud3543.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_237_length_34827_cov_4.750864 21697..21801 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3543.t1.start1Gcaud3543.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_237_length_34827_cov_4.750864 21827..21829 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=158bp
MSHSSQNTKVEYADKHETNMAAKMANMWEQRIGSGKIHSAKSHNSSHSTS
PSSVVKSSGSEMNREPGLTKAGSEKPFSRTNTEEIVKNFERMASMHKQES
RSSVAPAARRTGSVMSATKGGNGVSKNSIDDMIERIRSRMNEVDKDLREL
KSMVSDL*
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spliced messenger RNA

>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:21177..21829- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCATTCTTCGCAGAATACGAAAGTCGAATACGCTGACAAGCATGA
GACGAATATGGCCGCAAAGATGGCGAACATGTGGGAGCAGAGAATCGGTT
CTGGTAAGATTCACAGCGCCAAGAGTCACAACAGCTCCCACAGCACCTCT
CCTAGCTCAGTCGTGAAGTCTTCCGGTTCTGAGATGAATCGGGAACCAGG
GCTTACCAAAGCAGGGTCGGAAAAACCGTTCTCACGAACGAATACGGAGG
AAATCGTCAAGAATTTCGAAAGAATGGCAAGTATGCATAAACAGGAATCA
AGGAGCAGTGTTGCTCCGGCAGCACGGAGAACTGGCTCGGTAATGAGCGC
AACAAAGGGCGGAAATGGTGTATCGAAGAATAGCATTGACGACATGATTG
AGAGGATTCGCTCACGCATGAATGAGGTGGACAAAGACCTTCGTGAGCTT
AAGTCAATGGTATCTGATCTCTAG
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protein sequence of Gcaud3543.t1

>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MSHSSQNTKVEYADKHETNMAAKMANMWEQRIGSGKIHSAKSHNSSHSTS
PSSVVKSSGSEMNREPGLTKAGSEKPFSRTNTEEIVKNFERMASMHKQES
RSSVAPAARRTGSVMSATKGGNGVSKNSIDDMIERIRSRMNEVDKDLREL
KSMVSDL*
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mRNA from alignment at NODE_237_length_34827_cov_4.750864:21177..21829-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=653bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:21177..21829- (Gracilaria caudata M_176_S67 male)
ATGTCTCATTCTTCGCAGAATACGAAAGGTAAGTCTCTTGAGATATCTCG
GAAGCTTCAGGATGAAGCTTTAGTTCTTAACGCTTTCCAAGAGGTCGCAA
CAAATGACATCTAACAAACTCGTTCTGCTCCAGTCGAATACGCTGACAAG
CATGAGACGAATATGGCCGCAAAGATGGCGAACATGTGGGAGCAGAGAAT
CGGTTCTGGTAAGATTCACAGCGCCAAGAGTCACAACAGCTCCCACAGCA
CCTCTCCTAGCTCAGTCGTGAAGTCTTCCGGTTCTGAGATGAATCGGGAA
CCAGGGCTTACCAAAGCAGGGTCGGAAAAACCGTTCTCACGAACGAATAC
GGAGGAAATCGTCAAGAGTAAGTTTCGGCAATCTGTTTCTCGTGTAAGAG
AGAGAAATGTTCTAATGTGATTTCATGTAATGCGCAAACAGATTTCGAAA
GAATGGCAAGTATGCATAAACAGGAATCAAGGAGCAGTGTTGCTCCGGCA
GCACGGAGAACTGGCTCGGTAATGAGCGCAACAAAGGGCGGAAATGGTGT
ATCGAAGAATAGCATTGACGACATGATTGAGAGGATTCGCTCACGCATGA
ATGAGGTGGACAAAGACCTTCGTGAGCTTAAGTCAATGGTATCTGATCTC
TAG
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Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:21177..21829-

>Gcaud3543.t1 ID=Gcaud3543.t1|Name=Gcaud3543.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=474bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:21177..21829- (Gracilaria caudata M_176_S67 male)
ATGTCTCATTCTTCGCAGAATACGAAAGTCGAATACGCTGACAAGCATGA
GACGAATATGGCCGCAAAGATGGCGAACATGTGGGAGCAGAGAATCGGTT
CTGGTAAGATTCACAGCGCCAAGAGTCACAACAGCTCCCACAGCACCTCT
CCTAGCTCAGTCGTGAAGTCTTCCGGTTCTGAGATGAATCGGGAACCAGG
GCTTACCAAAGCAGGGTCGGAAAAACCGTTCTCACGAACGAATACGGAGG
AAATCGTCAAGAATTTCGAAAGAATGGCAAGTATGCATAAACAGGAATCA
AGGAGCAGTGTTGCTCCGGCAGCACGGAGAACTGGCTCGGTAATGAGCGC
AACAAAGGGCGGAAATGGTGTATCGAAGAATAGCATTGACGACATGATTG
AGAGGATTCGCTCACGCATGAATGAGGTGGACAAAGACCTTCGTGAGCTT
AAGTCAATGGTATCTGATCTCTAG
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