Gcaud3539.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3539.t2
Unique NameGcaud3539.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length279
Homology
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BLAST of Gcaud3539.t2 vs. uniprot
Match: A0A2V3IP84_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP84_9FLOR)

HSP 1 Score: 351 bits (900), Expect = 4.010e-115
Identity = 189/281 (67.26%), Postives = 222/281 (79.00%), Query Frame = 0 
Query:    1 LYGTPAHLVQRGPTAIEPALADKISRGRELALLAIEQEEQGNMGAAEAGYMKALALLVPASKELDIGSELSRNARNVMKAKVQREASAMLDRCEELSKFLKAAAPTVPTNVPDMPKIGNRSSRSRGPHAPSTLRKTRTKLDEDPISPDSAVLPPRVKTK-KSVVKPQVYIPPXXXPSFKDNPRELFQRIEDRKDVLSAASVAVP--PASDTLTKERKPTLPLTRETHAKCFMCNETAHLSAPCDHKFCSACGNQAVSVFGTCPVPGCTTQLSTESFTHILP 278
            LYGTPAHL QRGPT ++P+LA+KI+RGR+LA LAIEQEEQGNMGAAEAGYMKAL+LLVPASKELDIGSEL++NAR  +KAKVQREASAMLD+CE+L  FLKA APTVPT+VP+MP   + S  +R P   S  R  R   DEDP+SPDSAVLPPRV+T+ +S  K Q +IP XXX SF+D+PREL QR+E RK+VLSAAS   P  P +  L K R+ ++P   ET+AKCFMC E AHL  PC+H FCS CGNQ VSVFG CPVPGC T+L+TESF HI P
Sbjct:  284 LYGTPAHLAQRGPTTVDPSLAEKINRGRQLAFLAIEQEEQGNMGAAEAGYMKALSLLVPASKELDIGSELNKNARLSLKAKVQREASAMLDKCEQLRLFLKATAPTVPTDVPNMPTQNSTSYPTR-PRNSSPPRTDRRSFDEDPVSPDSAVLPPRVETRTRSPKKSQRHIPXXXXXSFQDDPRELIQRLEHRKNVLSAASDVFPSAPNASVLHKPRQ-SVPKRLETYAKCFMCKENAHLKTPCNHAFCSICGNQTVSVFGKCPVPGCNTRLTTESFIHIAP 562
The following BLAST results are available for this feature:
BLAST of Gcaud3539.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IP84_9FLOR4.010e-11567.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.80coord: 20..107
e-value: 1.0E-7
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..152
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 226..267
IPR036181MIT domain superfamilySUPERFAMILY116846MIT domaincoord: 22..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_237_length_34827_cov_4.750864contigNODE_237_length_34827_cov_4.750864:14733..15569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3539.t2Gcaud3539.t2Gracilaria caudata M_176_S67 malemRNANODE_237_length_34827_cov_4.750864 14733..15569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
LYGTPAHLVQRGPTAIEPALADKISRGRELALLAIEQEEQGNMGAAEAGY
MKALALLVPASKELDIGSELSRNARNVMKAKVQREASAMLDRCEELSKFL
KAAAPTVPTNVPDMPKIGNRSSRSRGPHAPSTLRKTRTKLDEDPISPDSA
VLPPRVKTKKSVVKPQVYIPPPPPPSFKDNPRELFQRIEDRKDVLSAASV
AVPPASDTLTKERKPTLPLTRETHAKCFMCNETAHLSAPCDHKFCSACGN
QAVSVFGTCPVPGCTTQLSTESFTHILP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036181MIT_dom_sf