Gcaud3539.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3539.t2
Unique Name	Gcaud3539.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:14733..15569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3539	Gcaud3539	Gracilaria caudata M_176_S67 male	gene	NODE_237_length_34827_cov_4.750864 13866..15569 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3539.t2.start1	Gcaud3539.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_237_length_34827_cov_4.750864 14733..14735 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3539.t2.CDS1	Gcaud3539.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 14733..15569 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3539.t2.exon1	Gcaud3539.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 14733..15569 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3539.t2.stop1	Gcaud3539.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_237_length_34827_cov_4.750864 15567..15569 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3539.t2	Gcaud3539.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_237_length_34827_cov_4.750864 14733..15569 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+
coding sequence from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+

mRNA sequence

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp
LYGTPAHLVQRGPTAIEPALADKISRGRELALLAIEQEEQGNMGAAEAGY
MKALALLVPASKELDIGSELSRNARNVMKAKVQREASAMLDRCEELSKFL
KAAAPTVPTNVPDMPKIGNRSSRSRGPHAPSTLRKTRTKLDEDPISPDSA
VLPPRVKTKKSVVKPQVYIPPPPPPSFKDNPRELFQRIEDRKDVLSAASV
AVPPASDTLTKERKPTLPLTRETHAKCFMCNETAHLSAPCDHKFCSACGN
QAVSVFGTCPVPGCTTQLSTESFTHILP*

spliced messenger RNA

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTATGGCACACCTGCTCATCTGGTCCAACGCGGGCCAACAGCTATTGA
ACCGGCTTTAGCGGATAAGATAAGTCGTGGGCGTGAGCTGGCACTACTGG
CGATAGAGCAAGAAGAGCAAGGAAACATGGGTGCAGCCGAAGCAGGCTAT
ATGAAGGCATTGGCTCTTCTTGTTCCAGCTTCAAAAGAGCTTGACATTGG
ATCCGAGCTTAGCCGAAATGCGCGCAATGTAATGAAGGCCAAAGTGCAAC
GTGAAGCTTCCGCGATGCTTGATAGATGCGAGGAGTTGAGTAAGTTCCTC
AAGGCTGCAGCACCTACGGTACCAACTAATGTACCCGACATGCCAAAGAT
AGGAAATCGGTCGTCTCGATCAAGAGGGCCACATGCTCCCAGTACGCTTC
GGAAAACGCGAACGAAGTTAGACGAAGACCCTATCTCTCCGGATTCTGCA
GTATTACCCCCACGAGTCAAGACGAAGAAGTCCGTGGTTAAGCCTCAGGT
ATACATACCACCTCCACCTCCTCCATCATTCAAGGACAATCCACGAGAGC
TTTTCCAACGAATCGAGGACCGCAAGGATGTGCTTTCGGCTGCCTCTGTC
GCAGTCCCTCCAGCGTCTGATACACTGACCAAAGAAAGGAAACCCACACT
TCCCTTGACACGGGAAACACATGCGAAATGTTTCATGTGCAATGAAACCG
CCCATCTGAGCGCCCCATGTGATCACAAGTTCTGTTCGGCGTGTGGTAAT
CAAGCCGTCTCTGTCTTCGGGACGTGCCCTGTACCAGGATGCACAACACA
GCTTTCCACGGAATCTTTCACTCACATTTTACCCTAG

protein sequence of Gcaud3539.t2

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
LYGTPAHLVQRGPTAIEPALADKISRGRELALLAIEQEEQGNMGAAEAGY
MKALALLVPASKELDIGSELSRNARNVMKAKVQREASAMLDRCEELSKFL
KAAAPTVPTNVPDMPKIGNRSSRSRGPHAPSTLRKTRTKLDEDPISPDSA
VLPPRVKTKKSVVKPQVYIPPPPPPSFKDNPRELFQRIEDRKDVLSAASV
AVPPASDTLTKERKPTLPLTRETHAKCFMCNETAHLSAPCDHKFCSACGN
QAVSVFGTCPVPGCTTQLSTESFTHILP*

mRNA from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+ (Gracilaria caudata M_176_S67 male)
CTGTATGGCACACCTGCTCATCTGGTCCAACGCGGGCCAACAGCTATTGA
ACCGGCTTTAGCGGATAAGATAAGTCGTGGGCGTGAGCTGGCACTACTGG
CGATAGAGCAAGAAGAGCAAGGAAACATGGGTGCAGCCGAAGCAGGCTAT
ATGAAGGCATTGGCTCTTCTTGTTCCAGCTTCAAAAGAGCTTGACATTGG
ATCCGAGCTTAGCCGAAATGCGCGCAATGTAATGAAGGCCAAAGTGCAAC
GTGAAGCTTCCGCGATGCTTGATAGATGCGAGGAGTTGAGTAAGTTCCTC
AAGGCTGCAGCACCTACGGTACCAACTAATGTACCCGACATGCCAAAGAT
AGGAAATCGGTCGTCTCGATCAAGAGGGCCACATGCTCCCAGTACGCTTC
GGAAAACGCGAACGAAGTTAGACGAAGACCCTATCTCTCCGGATTCTGCA
GTATTACCCCCACGAGTCAAGACGAAGAAGTCCGTGGTTAAGCCTCAGGT
ATACATACCACCTCCACCTCCTCCATCATTCAAGGACAATCCACGAGAGC
TTTTCCAACGAATCGAGGACCGCAAGGATGTGCTTTCGGCTGCCTCTGTC
GCAGTCCCTCCAGCGTCTGATACACTGACCAAAGAAAGGAAACCCACACT
TCCCTTGACACGGGAAACACATGCGAAATGTTTCATGTGCAATGAAACCG
CCCATCTGAGCGCCCCATGTGATCACAAGTTCTGTTCGGCGTGTGGTAAT
CAAGCCGTCTCTGTCTTCGGGACGTGCCCTGTACCAGGATGCACAACACA
GCTTTCCACGGAATCTTTCACTCACATTTTACCCTAG

Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+

>Gcaud3539.t2 ID=Gcaud3539.t2|Name=Gcaud3539.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=837bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:14733..15569+ (Gracilaria caudata M_176_S67 male)
CTGTATGGCACACCTGCTCATCTGGTCCAACGCGGGCCAACAGCTATTGA
ACCGGCTTTAGCGGATAAGATAAGTCGTGGGCGTGAGCTGGCACTACTGG
CGATAGAGCAAGAAGAGCAAGGAAACATGGGTGCAGCCGAAGCAGGCTAT
ATGAAGGCATTGGCTCTTCTTGTTCCAGCTTCAAAAGAGCTTGACATTGG
ATCCGAGCTTAGCCGAAATGCGCGCAATGTAATGAAGGCCAAAGTGCAAC
GTGAAGCTTCCGCGATGCTTGATAGATGCGAGGAGTTGAGTAAGTTCCTC
AAGGCTGCAGCACCTACGGTACCAACTAATGTACCCGACATGCCAAAGAT
AGGAAATCGGTCGTCTCGATCAAGAGGGCCACATGCTCCCAGTACGCTTC
GGAAAACGCGAACGAAGTTAGACGAAGACCCTATCTCTCCGGATTCTGCA
GTATTACCCCCACGAGTCAAGACGAAGAAGTCCGTGGTTAAGCCTCAGGT
ATACATACCACCTCCACCTCCTCCATCATTCAAGGACAATCCACGAGAGC
TTTTCCAACGAATCGAGGACCGCAAGGATGTGCTTTCGGCTGCCTCTGTC
GCAGTCCCTCCAGCGTCTGATACACTGACCAAAGAAAGGAAACCCACACT
TCCCTTGACACGGGAAACACATGCGAAATGTTTCATGTGCAATGAAACCG
CCCATCTGAGCGCCCCATGTGATCACAAGTTCTGTTCGGCGTGTGGTAAT
CAAGCCGTCTCTGTCTTCGGGACGTGCCCTGTACCAGGATGCACAACACA
GCTTTCCACGGAATCTTTCACTCACATTTTACCCTAG