Gcaud3501.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3501.t1
Unique NameGcaud3501.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length125
Homology
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A2V3II38_9FLOR (Copine-5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II38_9FLOR)

HSP 1 Score: 211 bits (537), Expect = 2.400e-62
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MGLCLAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELAENVLQEVPQRVVDYMVDAGISPG 123
            MGLC +QPV+Q NQHFCVLLIITDG+I+DMAATVDTII+AS+ TPIAIVIVGVGNA+F AMKRLDGDN RL SNDG +KAKHDIVQFT+FK GQPVEELAENVLQEVP RVVD+MVDAGISPG
Sbjct:  588 MGLCQSQPVSQANQHFCVLLIITDGIITDMAATVDTIIDASYNTPIAIVIVGVGNANFEAMKRLDGDNERLKSNDGMRKAKHDIVQFTRFKSGQPVEELAENVLQEVPARVVDFMVDAGISPG 710          
BLAST of Gcaud3501.t1 vs. uniprot
Match: R7QI63_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI63_CHOCR)

HSP 1 Score: 143 bits (360), Expect = 2.750e-37
Identity = 69/115 (60.00%), Postives = 90/115 (78.26%), Query Frame = 0
Query:    8 PVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELAENVLQEVPQRVVDYMVDAGISP 122
            PV    QHF VLLI+TDG +SD+  T+D II+ S R P+AIVIVG+G+ADF++M+RLDGD  +L S+ G ++AKHDIVQFT+F   + V+ +A  VLQEVPQRVV+YM+DAGI P
Sbjct:  589 PVTPTYQHFSVLLILTDGAVSDLVETIDAIIDCSKRAPLAIVIVGIGDADFSSMRRLDGDTAKLRSDSG-REAKHDIVQFTKFDTKKSVDVIASEVLQEVPQRVVEYMIDAGIQP 702          
BLAST of Gcaud3501.t1 vs. uniprot
Match: UPI001E1D3AED (copine-4-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3AED)

HSP 1 Score: 124 bits (311), Expect = 1.470e-30
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 0
Query:    7 QPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELAENVLQEVPQRVVDYMVDAGISP 122
            Q   Q +QH+ VLLI+TDG I+D+   VD IIEAS   P++IVIVG+G+ DF++MKRLDGD+ RL S DG +KA+ DIVQF  ++    +  L   VL E+P  VVDY VD  ISP
Sbjct:  620 QVPTQMDQHYTVLLILTDGQITDLETCVDKIIEASRLHPLSIVIVGIGSGDFSSMKRLDGDDRRLRSRDGVRKAERDIVQFVHWQSNMSLHTLTAQVLSELPTAVVDYFVDKKISP 735          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A6T6D6M8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6D6M8_9RHOD)

HSP 1 Score: 109 bits (272), Expect = 2.870e-26
Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = 0
Query:    2 GLCLAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELAENVLQEVPQRVVDYMVDAGISP 122
            G+  + P +Q  Q + VLLI+TDGVISDMA TV++II+AS   P++I+IVGVG+A+F+AMK LD D+  L S  G + A +D+VQF  F+       LA +VL E+P RVV Y V+  I P
Sbjct:  126 GVARSTPQSQAAQTYHVLLILTDGVISDMAETVNSIIDASKDAPLSIIIVGVGSANFSAMKHLDADDTPLRSATG-RVASNDVVQFVAFRDQNSSASLARSVLAELPDRVVRYFVERSIMP 245          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A6A5BSJ5_NAEFO (Uncharacterized protein n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BSJ5_NAEFO)

HSP 1 Score: 108 bits (270), Expect = 4.640e-25
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0
Query:    6 AQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKP--GQPVEELAENVLQEVPQRVVDYMVDAGISP 122
            +QP++Q NQ + +LLIITDG I+DM AT+D I++AS   P++I+IVGVGNA+F +M  LDGD+ RL S    + A  DIVQF  F     QP   LA+ VL E+PQ+V  +M    I P
Sbjct:  431 SQPISQQNQEYYILLIITDGAINDMDATIDEIVKASDL-PLSIIIVGVGNANFESMVTLDGDDGRLRSTRTGRYASRDIVQFVPFNQFRNQPYTYLAKEVLAEIPQQVTSFMKMKNIVP 548          
BLAST of Gcaud3501.t1 vs. uniprot
Match: D3B2C8_POLPP (Phospholipid-binding protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B2C8_POLPP)

HSP 1 Score: 106 bits (264), Expect = 3.160e-24
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 0
Query:    5 LAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFK--PGQPVEELAENVLQEVPQRVVDYMVDAGISP 122
            LA    Q NQ + +LLIITDG I DM AT+D+II+A+ + PI+IVIVGVGNADF++M RLDGD+  LT+  G   A  DIVQF        +P   LAE  L+E+P + ++YM   GI P
Sbjct:  401 LASGSNQTNQKYTILLIITDGEIMDMEATIDSIIQATSQ-PISIVIVGVGNADFSSMVRLDGDDQALTN--GINTASRDIVQFVAHNNYKDKPFHLLAEETLKEIPTQFIEYMRKHGIKP 517          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A6P8PZP2_GEOSA (copine-6 n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8PZP2_GEOSA)

HSP 1 Score: 105 bits (262), Expect = 4.950e-24
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 0
Query:    7 QPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQ--PVEELAENVLQEVPQRVVDYMVDAGISP 122
            +  +Q+   +C+LLIITDGV+SDMA T D ++ AS R P++I+IVGVGNADF+ M+ LDGD+  L S  G   A+ DIVQF  F+  +  P   LA+ VL EVP++VV+Y    GI+P
Sbjct:  420 ESKSQHATKYCILLIITDGVVSDMAETRDAVVRAS-RLPMSIIIVGVGNADFSDMRMLDGDDGTLHSTKGEPAAR-DIVQFVPFRDFKTAPSSALAKCVLAEVPKQVVEYYASRGIAP 535          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A0B6YP62_9EUPU (Copine domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YP62_9EUPU)

HSP 1 Score: 97.8 bits (242), Expect = 1.470e-23
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0
Query:   11 QNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKP------GQPVE----ELAENVLQEVPQRVVDYMVDAGISP 122
            Q+  H+ VLLI+TDG+I+DM  T+D I+EAS+  P++++IVGVGNA+F AM  LD D+H L S    K A+ DIVQF  F+       G  +      LA+ VL EVP +VV YM    I P
Sbjct:   10 QDGSHYFVLLILTDGIITDMQQTIDAIVEASYL-PMSVIIVGVGNAEFDAMDALDADDHILRSQTTGKCAERDIVQFVPFRDVISGQFGADINMSKMTLAKEVLAEVPDQVVLYMKKRNIQP 130          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A3P4S7K5_GULGU (Copine domain-containing protein (Fragment) n=1 Tax=Gulo gulo TaxID=48420 RepID=A0A3P4S7K5_GULGU)

HSP 1 Score: 97.8 bits (242), Expect = 2.350e-23
Identity = 61/121 (50.41%), Postives = 78/121 (64.46%), Query Frame = 0
Query:    6 AQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFT---QFKPGQPVEELAENVLQEVPQRVVDYMVDAGISPG 123
            + P A   Q + VLL++TDGV+SDMA T   I+ AS R P++I+IVGVGNADF+ M+ LDGD+  L    G   A+ DIVQF     FK   P   LA+ VL EVP++VV+Y    GISPG
Sbjct:   34 SPPPALCPQKYSVLLVLTDGVVSDMAETRAAIVRAS-RLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAAR-DIVQFVPFRDFKDAAP-SALAKCVLAEVPRQVVEYYASQGISPG 151          
BLAST of Gcaud3501.t1 vs. uniprot
Match: A0A7I8VH09_9ANNE (DgyrCDS4430 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VH09_9ANNE)

HSP 1 Score: 103 bits (256), Expect = 3.170e-23
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 0
Query:    5 LAQPVAQN-NQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFK---------PGQPVEELAENVLQEVPQRVVDYMVDAGISPG 123
            LA  V QN N H+ +LLI+TDGVI+DMA T   I+ AS   PI+I+IVGVG+A+F+AM  LD D+ +LTS  G + A+ DIVQF  F+         PG     LA+ VL EVP+++  YM   GI PG
Sbjct:  406 LASSVRQNLNGHYYILLIVTDGVITDMAQTKSAIVSASGL-PISIIIVGVGSANFSAMNELDSDDVKLTS--GGRTAERDIVQFVPFRECQIQSQNCPGTFKAILAKEVLAEVPEQITGYMRSRGIKPG 531          
The following BLAST results are available for this feature:
BLAST of Gcaud3501.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II38_9FLOR2.400e-6284.55Copine-5 n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
R7QI63_CHOCR2.750e-3760.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D3AED1.470e-3053.45copine-4-like n=1 Tax=Mercenaria mercenaria TaxID=... [more]
A0A6T6D6M8_9RHOD2.870e-2649.59Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6A5BSJ5_NAEFO4.640e-2549.58Uncharacterized protein n=2 Tax=Naegleria fowleri ... [more]
D3B2C8_POLPP3.160e-2450.83Phospholipid-binding protein n=1 Tax=Polysphondyli... [more]
A0A6P8PZP2_GEOSA4.950e-2450.00copine-6 n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6... [more]
A0A0B6YP62_9EUPU1.470e-2346.72Copine domain-containing protein (Fragment) n=1 Ta... [more]
A0A3P4S7K5_GULGU2.350e-2350.41Copine domain-containing protein (Fragment) n=1 Ta... [more]
A0A7I8VH09_9ANNE3.170e-2348.84DgyrCDS4430 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010734Copine, C-terminalPFAMPF07002Copinecoord: 7..121
e-value: 1.3E-30
score: 106.5
IPR045052CopinePANTHERPTHR10857COPINEcoord: 6..123
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 13..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_436_length_25374_cov_4.383380contigNODE_436_length_25374_cov_4.383380:24802..25176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1Gcaud3501.t1Gracilaria caudata M_176_S67 malemRNANODE_436_length_25374_cov_4.383380 24802..25176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=125bp
MGLCLAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVI
VGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELA
ENVLQEVPQRVVDYMVDAGISPGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010734Copine_C
IPR045052Copine
IPR036465vWFA_dom_sf