Gcaud3392.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3392.t1
Unique NameGcaud3392.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Homology
BLAST of Gcaud3392.t1 vs. uniprot
Match: A0A2V3IWW7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWW7_9FLOR)

HSP 1 Score: 273 bits (698), Expect = 3.860e-92
Identity = 135/159 (84.91%), Postives = 149/159 (93.71%), Query Frame = 0
Query:    1 MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLKEDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIRGACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVILKLIRMKPNR 159
            MIVSVVI+ Y +GGVIFSRFYGHELRTEQQQAKWLKKLRDATA DW LLKED+PEQ+ATVGEVQI YKL+GD VLM+AGVEEHDALLLLEL RS+D SIRGACKIPENKQQQTTVSAERRILQ+++NLCL++DEQIDDGDIDHLD KV+LKLIRM+P R
Sbjct:    1 MIVSVVIVCYTSGGVIFSRFYGHELRTEQQQAKWLKKLRDATAPDWALLKEDNPEQIATVGEVQITYKLLGDVVLMVAGVEEHDALLLLELVRSLDLSIRGACKIPENKQQQTTVSAERRILQNHANLCLVIDEQIDDGDIDHLDSKVVLKLIRMRPGR 159          
BLAST of Gcaud3392.t1 vs. uniprot
Match: R7Q8G7_CHOCR (Coatomer subunit zeta n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8G7_CHOCR)

HSP 1 Score: 250 bits (638), Expect = 5.380e-83
Identity = 120/159 (75.47%), Postives = 144/159 (90.57%), Query Frame = 0
Query:    1 MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLKEDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIRGACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVILKLIRMKPNR 159
            M+VS+ I+SYA GGVIFSR+YGHEL TE+QQA+WLKKLRDATA  W LLKED+PEQVAT+GEVQ++YKL+GD VL+LAGVEEHDALL+LELAR+M  +IR AC +PENKQ +T  SAERRILQ+Y++LCLIVDE +DDGDIDHLDPKVILKLI+M+P+R
Sbjct:    1 MLVSITIVSYAAGGVIFSRYYGHELHTERQQAEWLKKLRDATALHWPLLKEDNPEQVATIGEVQVMYKLLGDVVLLLAGVEEHDALLMLELARAMTAAIRAACHVPENKQGETRASAERRILQNYASLCLIVDEMVDDGDIDHLDPKVILKLIKMRPSR 159          
BLAST of Gcaud3392.t1 vs. uniprot
Match: A0A1X6P678_PORUM (Coatomer subunit zeta n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P678_PORUM)

HSP 1 Score: 183 bits (465), Expect = 1.320e-56
Identity = 96/163 (58.90%), Postives = 121/163 (74.23%), Query Frame = 0
Query:    1 MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLKEDHPEQVATVG----EVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIRGACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVILKLIRMKPNR 159
            MI+S VIISY +GGV+F+R YG  L TE  QA W+++L  ATA DW LL+ +  EQVAT+G     VQ++YKL+GD VL+LAG EEHDALLLLE+AR++D  +RGAC+IP  +   T VSAE R+L  Y  LCL+VDE I DG++DHLD K +LKLI MKP R
Sbjct:    1 MILSFVIISYESGGVLFARHYGASLATESAQATWMRRLHAATAADWGLLRSEGEEQVATLGGAEAAVQVLYKLLGDVVLLLAGDEEHDALLLLEVARALDGCLRGACRIPRARDGTTRVSAEGRLLATYHRLCLVVDEVIVDGEVDHLDRKRVLKLIDMKPRR 163          
BLAST of Gcaud3392.t1 vs. uniprot
Match: A0A5J4YSU0_PORPP (Coatomer subunit zeta n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSU0_PORPP)

HSP 1 Score: 172 bits (435), Expect = 3.710e-52
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 0
Query:    1 MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLKEDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIRGACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVILKLIRMKPNR 159
            MI++ ++ SY  GGV+FSRF+G  L TE QQA WL+++R ATA++W LL  D+PEQVA V E  IV KL+GD V+++AG  EHDALL+LE  R+ +   R  CK+P  K     VSAERR+L+ Y NLCLIVDE ID+G IDHLD  +I K I MKPN+
Sbjct:    1 MILTFLVASYTKGGVLFSRFFGPNLATEAQQATWLERIRHATASEWALLASDYPEQVALVDECTIVTKLVGDVVVLVAGNREHDALLILEFLRAFETVFRKVCKVPATKP----VSAERRVLESYWNLCLIVDEMIDEGAIDHLDCALIEKQIAMKPNK 155          
BLAST of Gcaud3392.t1 vs. uniprot
Match: A0A061QRI4_9CHLO (Coatomer subunit zeta n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRI4_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.880e-8
Identity = 38/151 (25.17%), Postives = 80/151 (52.98%), Query Frame = 0
Query:    6 VIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLKEDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIRGACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVILKLIRMK 156
            +++S  +G ++  RF  H+  T + +++    +  A+ +    L ED  E V   G+  IVY  + D +L L G  E+D L+L  + R + ++++   K            +E  + + Y+ +C+ +DE +++G +D +DP++I K +++K
Sbjct:    9 ILLSTRSGQILVERF--HDTLTNEAKSEIRAAMYSASTSVVQNLPEDS-EHVFGYGDACIVYSPVADIILFLMGSGEYDELMLSSIIRVIKDALKATLK---------KSPSEAAVCEKYAKVCVTLDEVVNEGVLDMVDPELIRKAVKLK 147          
The following BLAST results are available for this feature:
BLAST of Gcaud3392.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IWW7_9FLOR3.860e-9284.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q8G7_CHOCR5.380e-8375.47Coatomer subunit zeta n=1 Tax=Chondrus crispus Tax... [more]
A0A1X6P678_PORUM1.320e-5658.90Coatomer subunit zeta n=1 Tax=Porphyra umbilicalis... [more]
A0A5J4YSU0_PORPP3.710e-5255.97Coatomer subunit zeta n=1 Tax=Porphyridium purpure... [more]
A0A061QRI4_9CHLO1.880e-825.17Coatomer subunit zeta n=2 Tax=Tetraselmis sp. GSL0... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 1..157
e-value: 2.4E-16
score: 61.9
NoneNo IPR availablePANTHERPTHR11043:SF1TSET COMPLEX MEMBER TSTDcoord: 5..157
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 3..155
e-value: 3.7E-5
score: 23.7
IPR039652Coatomer subunit zetaPANTHERPTHR11043ZETA-COAT PROTEINcoord: 5..157
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 3..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_100_length_51433_cov_4.606891contigNODE_100_length_51433_cov_4.606891:25877..26356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1Gcaud3392.t1Gracilaria caudata M_176_S67 malemRNANODE_100_length_51433_cov_4.606891 25877..26356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLK
EDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIR
GACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVIL
KLIRMKPNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR039652Coatomer_zeta
IPR011012Longin-like_dom_sf