Gcaud3392.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3392.t1
Unique NameGcaud3392.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_100_length_51433_cov_4.606891contigNODE_100_length_51433_cov_4.606891:25877..26356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ13276
PFAMsClat_adaptor_s
Max annot lvl35493|Streptophyta
KEGG koko:K20472
Evalue4.48e-13
EggNOG OGs29XBH@1|root,2RXRG@2759|Eukaryota,37TRZ@33090|Viridiplantae,3GI7S@35493|Streptophyta
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3392Gcaud3392Gracilaria caudata M_176_S67 malegeneNODE_100_length_51433_cov_4.606891 25877..26356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1.stop1Gcaud3392.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_100_length_51433_cov_4.606891 25877..25879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1.CDS1Gcaud3392.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 25877..26356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1.exon1Gcaud3392.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 25877..26356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1.start1Gcaud3392.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_100_length_51433_cov_4.606891 26354..26356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3392.t1Gcaud3392.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_100_length_51433_cov_4.606891 25877..26356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLK
EDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIR
GACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVIL
KLIRMKPNR*
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spliced messenger RNA

>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:25877..26356- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGTCTCAGTTGTAATCATTTCGTACGCAACTGGTGGAGTCATTTT
CTCAAGATTCTATGGACATGAACTTCGCACAGAACAGCAGCAAGCTAAAT
GGCTCAAGAAGTTGCGTGATGCAACTGCAACTGATTGGGTTCTTCTCAAA
GAGGATCATCCAGAACAAGTTGCAACGGTGGGGGAAGTGCAGATTGTGTA
CAAACTGATGGGGGATGCAGTTCTAATGCTAGCTGGTGTTGAGGAACATG
ATGCATTGCTTTTACTGGAGCTTGCAAGATCTATGGACGAGTCCATTAGA
GGTGCATGTAAGATTCCCGAGAACAAACAGCAGCAAACTACGGTCTCTGC
AGAACGCAGAATTTTACAGCATTATTCCAACCTATGTCTCATTGTCGATG
AGCAGATCGATGACGGTGACATAGACCATCTCGATCCCAAGGTAATCCTG
AAGCTTATTCGCATGAAACCAAATCGATGA
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protein sequence of Gcaud3392.t1

>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MIVSVVIISYATGGVIFSRFYGHELRTEQQQAKWLKKLRDATATDWVLLK
EDHPEQVATVGEVQIVYKLMGDAVLMLAGVEEHDALLLLELARSMDESIR
GACKIPENKQQQTTVSAERRILQHYSNLCLIVDEQIDDGDIDHLDPKVIL
KLIRMKPNR*
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mRNA from alignment at NODE_100_length_51433_cov_4.606891:25877..26356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:25877..26356- (Gracilaria caudata M_176_S67 male)
ATGATTGTCTCAGTTGTAATCATTTCGTACGCAACTGGTGGAGTCATTTT
CTCAAGATTCTATGGACATGAACTTCGCACAGAACAGCAGCAAGCTAAAT
GGCTCAAGAAGTTGCGTGATGCAACTGCAACTGATTGGGTTCTTCTCAAA
GAGGATCATCCAGAACAAGTTGCAACGGTGGGGGAAGTGCAGATTGTGTA
CAAACTGATGGGGGATGCAGTTCTAATGCTAGCTGGTGTTGAGGAACATG
ATGCATTGCTTTTACTGGAGCTTGCAAGATCTATGGACGAGTCCATTAGA
GGTGCATGTAAGATTCCCGAGAACAAACAGCAGCAAACTACGGTCTCTGC
AGAACGCAGAATTTTACAGCATTATTCCAACCTATGTCTCATTGTCGATG
AGCAGATCGATGACGGTGACATAGACCATCTCGATCCCAAGGTAATCCTG
AAGCTTATTCGCATGAAACCAAATCGATGA
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Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:25877..26356-

>Gcaud3392.t1 ID=Gcaud3392.t1|Name=Gcaud3392.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:25877..26356- (Gracilaria caudata M_176_S67 male)
ATGATTGTCTCAGTTGTAATCATTTCGTACGCAACTGGTGGAGTCATTTT
CTCAAGATTCTATGGACATGAACTTCGCACAGAACAGCAGCAAGCTAAAT
GGCTCAAGAAGTTGCGTGATGCAACTGCAACTGATTGGGTTCTTCTCAAA
GAGGATCATCCAGAACAAGTTGCAACGGTGGGGGAAGTGCAGATTGTGTA
CAAACTGATGGGGGATGCAGTTCTAATGCTAGCTGGTGTTGAGGAACATG
ATGCATTGCTTTTACTGGAGCTTGCAAGATCTATGGACGAGTCCATTAGA
GGTGCATGTAAGATTCCCGAGAACAAACAGCAGCAAACTACGGTCTCTGC
AGAACGCAGAATTTTACAGCATTATTCCAACCTATGTCTCATTGTCGATG
AGCAGATCGATGACGGTGACATAGACCATCTCGATCCCAAGGTAATCCTG
AAGCTTATTCGCATGAAACCAAATCGATGA
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