Gcaud3366.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3366.t1
Unique NameGcaud3366.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length566
Homology
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A2V3J1S9_9FLOR (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1S9_9FLOR)

HSP 1 Score: 744 bits (1920), Expect = 8.330e-265
Identity = 380/572 (66.43%), Postives = 457/572 (79.90%), Query Frame = 0
Query:    1 MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLAALTDLSSPYFEDVCARNQKQHRVVGDDQRFNFVRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSS---HQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAM-----HYEDDDXXXXXXXXXXNRPRIEIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDFGPITAAYFPSKYEVLDGYILHSKKRRRRA 564
            MVR  EALACAIARYHFKPIVAE+VRLL +HP STL  L+ L+SP+F+ + AR+  QH  +   +R ++VR+SLAVL QHGIV Y ER  F      +L    S    H  T I YYC+++ LLYRPRIPLYLGF RRRFGE G +VL  L ERGRLTS+ +F C+L+ K+AE  I++A  +ACLTDM++SG++HWCGKRK R S+L K      EA +  VG+KRPNP +      H++ D XXXXXXXXX NRP I+IGRGDH+R+V  P+K+ND DIWG+C+WHLNREFR ECC +VVS R+ +EL+V ILRVGL+IALS+EDC QPS+D ETAE+H DDI+KGLE+F + VG   FW+AA LL  HDPPFV+AVP  AP+HLKFVPGR+VAETR KTAEELILSRY   GRRIF+ALALEGAMEE+MLAEKCM PLKV+REH+FRMYQDRI+ TQEVPRSNDQQRASNWFYLW+VN  S+HRNL+++MYKTLLNLF+QYE+L++D K PEE+ K + RE L+IA ILRVDQSVMVMRDFG +TAAYFPSKYEVLDGYI+ SKKRRRRA
Sbjct:    1 MVRHEEALACAIARYHFKPIVAEIVRLLFIHPASTLLTLSSLASPFFDSLSARSANQHHPISHLKRLDYVRNSLAVLLQHGIVTYEER--FTSAPPPALPPSQSDLVRHTPTHIVYYCNIHALLYRPRIPLYLGFVRRRFGELGQSVLRTLFERGRLTSSIIFGCSLSHKVAEHAITDADAEACLTDMLKSGLLHWCGKRKPRSSLLEKTISTHFEAQLHNVGAKRPNPFSANNHLPHHQLDXXXXXXXXXXHNRPMIQIGRGDHVRTVGAPNKHNDKDIWGICFWHLNREFRVECCTLVVSNRIPNELAVLILRVGLEIALSREDCLQPSEDFETAEIHIDDIRKGLEDFGMSVGTHHFWDAAQLLTNHDPPFVIAVPAPAPSHLKFVPGRIVAETRAKTAEELILSRYGGVGRRIFQALALEGAMEERMLAEKCMLPLKVMREHVFRMYQDRIIATQEVPRSNDQQRASNWFYLWRVNLLSIHRNLLQIMYKTLLNLFLQYELLNRDNKTPEEKNKFQKREALIIACILRVDQSVMVMRDFGAVTAAYFPSKYEVLDGYIMPSKKRRRRA 570          
BLAST of Gcaud3366.t1 vs. uniprot
Match: R7Q9L1_CHOCR (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9L1_CHOCR)

HSP 1 Score: 493 bits (1268), Expect = 7.870e-166
Identity = 269/584 (46.06%), Postives = 360/584 (61.64%), Query Frame = 0
Query:    6 EALACAIARYHFKPIVAEVVRLLCLHPGSTLAALTDLSSPYFEDVCARNQKQHRVVGDDQRFNFVRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSSHQ-------------RTRIH--YYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGS------KRPNPTAMHYEDDDXXXXXXXXXXN-----RPRIEIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLD--QDTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDFGPITAAYFPSKYEVLDGYILHSKKRR 561
            EALAC++ R  F    AE +R+L   PGS+ A +   ++P  E +   + K     G       +RDSLAVL QHGI Y VER  F+  K  +  +G  S +             RT  H  YY      L+R R+PLYLGFARRR+G+ G   + A  ERGRLTS QLF   L   + +  I+E+  +ACL DM +SG++ W G+R     +        E +  D + +      KR  P+    E DD                R  I IGR  H   V  P + ND D+W +C+WHLNREFRNECC +VV  RV + ++V ILR GL++AL +EDCQ PSDD ETAE+    I++ L+E D  VG  DFW A  LL +  P FV+ +P  +PT L+F+ GRLV++ R KT E+LILSRY + GRR+FRALA++G ME+K +AEKCM PLKV REHLFRMYQDRI+V QEVPRS+DQQRASNW+YLWKVN   V+R++  +MYKT+LNLF++ E L+  + T    +QK+++ ++ LL+ SI+R+DQ +MVMRDFGPITA Y P++Y ++DG +   KKRR
Sbjct:    4 EALACSMVRSQFGEATAETLRILLASPGSSFAQIIAKATPLIETLANADTKTS---GPQTCHALIRDSLAVLLQHGIAYAVER--FNGPKEEASTNGDRSEKEDQIDVERHRKRSRTLTHSAYYARGEYALFRSRLPLYLGFARRRYGDVGETAVRAFFERGRLTSHQLFSSVLTSVLIDLDITESDAEACLNDMAKSGIMRWHGRRDMNGPLNGNSPEADESSRNDYISNQKDMNGKRSRPSESDDESDDDEPMLQGSGSQSGAEERECIRIGRCHHSIVVGAPSRKNDMDVWNICFWHLNREFRNECCAIVVQGRVQNHVAVGILRAGLRMALEEEDCQAPSDDFETAEIEVATIEEQLKE-DGAVGNHDFWEALQLLMEQTPTFVVGIPEKSPTSLRFITGRLVSDARQKTLEDLILSRYGAVGRRVFRALAVDGGMEDKAVAEKCMLPLKVAREHLFRMYQDRILVMQEVPRSHDQQRASNWYYLWKVNAMGVYRSMTALMYKTVLNLFLRLESLEATKSTARGADQKQLRLQKELLMGSIVRMDQCIMVMRDFGPITAQYLPARYRIIDGPLAKPKKRR 581          
BLAST of Gcaud3366.t1 vs. uniprot
Match: UPI001CF13B58 (DNA-directed RNA polymerase III subunit RPC3-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF13B58)

HSP 1 Score: 77.0 bits (188), Expect = 3.250e-11
Identity = 101/449 (22.49%), Postives = 175/449 (38.98%), Query Frame = 0
Query:   70 VRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAPKMAE-FGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTKDPEEQKKMKNRETL 517
            V+ SL  L QH  V Y         K  SL             Y   ++ +L R R P Y+  A+  FG  G  ++  +L+ G L  +++    ++    E     E+ V++   D+V S   H+  + +   S     E         +    +        +DD            +   +   GD     +  D  ++  +W   +   ++EF +E  +  V  +V+ + +  I++  LQ+     D   P+    T  V   +I + L        AQ       LL+     FV                + +      T E ++  R+ S   RIFR L L+  ME+K + E  M   K  +E L++++ +R +  QE+PR++D    S  FYL+ V    + R LIE  Y+ L NL     M  + T+  E ++ ++  E L
Sbjct:   50 VQKSLCCLIQHHFVSYEVN-----KKNVSL-------------YNAWISNILLRARAPRYIYCAKCLFGYSGELIVDEILQHGSLEMSKVVTKVMSHLTEENIDFDESEVKSTFADLVMS---HFLQRVRTETSDNTSTEDDMYSLPPGLTFQGQGVKRKRSIDDDGHPTKR-----QKTEAKSTAGD-----ICSDIKDEGILWKTNFSRFHQEFIDEAIVSAVIKKVD-KFAGDIVKAMLQLNELNRDPLSPT----TQAVSLHEISQNLTMIPKMENAQ-VTQYLSLLSDEKENFVSKTGERGGGMYCINMQKCIDALCQNTVESVVQERFGSRCFRIFRLLLLKKHMEQKQIGELAMISSKDAKEFLYKLFAERFIAMQEIPRTSDYA-PSRTFYLFSVELPQLSRMLIEKSYQALGNL-----MARRQTEVQENRRLVEKEERL 455          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A2B4T2I7_STYPI (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4T2I7_STYPI)

HSP 1 Score: 74.7 bits (182), Expect = 1.780e-10
Identity = 86/394 (21.83%), Postives = 172/394 (43.65%), Query Frame = 0
Query:  113 YYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGR-LTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGR--------GDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETR-HKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYE 496
            Y   ++ +L+R R P Y+   +  FG  G  ++  + + G  + S  + K     +       E  +Q C  ++V++   H+  + K          R +E++    +G+   N   ++                R   + G+          +  S    + ++D  +W V +   ++ F +E  + VV+ +V+ + + +I++  L+++    D   P+  ++T  +H  +I + L        AQ     +LL  + D   +++    +   +  +  +   +T      E ++  R+ S   RIFR L L+  ME+K + E  M P K V+E L++++ +R +  QE+PR++D    S   YL+ VN   V R L+E  Y+ L NL  + E
Sbjct:   75 YSALISNILFRLRAPRYIYCVKSIFGYTGELIIDEIFQHGSAIMSTVVDKVARHLEEDNLDSDEDEIQVCFANLVKN---HFLQRLKPT--------RNEEQS----MGNSSYNDDDLYALPPGMNLQGHGSKRKRSIADEGQTTKRQKTGASYTASAKGSELSDDGILWQVNFARFHQHFIDENIVTVVTKKVD-KFAGEIVKTMLKLSELARDPLSPT--LQTVSLH--EISQNLSVTPKMEKAQIVQYLSLLTDEKDN--LVSKTGESGGGMYCINMQKCVDTLCQNVIESIVQERFGSRCFRIFRLLLLKKHMEQKQIGELAMIPSKDVKELLYKLFAERFIALQEIPRASDYA-PSRTVYLFSVNLPQVSRMLLEKSYQALGNLMSRRE 445          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A6P8IH03_ACTTE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IH03_ACTTE)

HSP 1 Score: 67.0 bits (162), Expect = 4.740e-8
Identity = 86/435 (19.77%), Postives = 180/435 (41.38%), Query Frame = 0
Query:   70 VRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAP-KMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTK 503
            V+ +L  L QH +V + E+                  ++  + Y  ++  +L   R P ++  A+  F + G  ++  +++ G +  + +    +   K A    +E+ V+   +++V+   ++       RLS     + Q EE + + +    P  +      +D          ++P   +  GD   S    +  +    W + Y   ++ F  +  +  V  + +S ++ +I+R   +      D Q  +    T  +   +I K L +      ++     +L++   D            T++  +   +    +H T + ++  RY S   RIFR L  +  +E+K + E  M P K  +E L++++ ++I+  QEVP++ D    S  FYL+ VN   + R  +E  Y+T  NL  + +   QD +
Sbjct:   50 VQKALCSLVQHKLVVHEEK------------------KKNVLLYSLEIEKILLYLRFPRFVMAAKSLFDDTGKLIIEEIIKHGAIPMSVIVDNVVEQFKCAGLNSTESDVRKVFSNLVEGHYLY-------RLSQ----DSQGEEGSDEKMFVLPPETSGKRKRSNDS---------DQPAKRLKTGDGRSSQDSYEIADQGIRWSINYKRFHQLFLEQEIISAVEKKFDS-VAAEIVRTMFKTDELSRDIQAVT----TKPITFYEIAKSLPKNCRIENSRISQYLSLMIDDRDKLVRKQDESGGGTYVIDMKNCVTTLCQH-TLQSILQERYGSNALRIFRLLLQKDHLEQKQIGELSMIPSKDAKELLYKLFSEKIINMQEVPKTADYA-PSRTFYLFSVNLKQLSRMHLERCYQTQGNLMSRRQSETQDNR 439          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A077WWG0_9FUNG (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WWG0_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 6.580e-8
Identity = 107/514 (20.82%), Postives = 189/514 (36.77%), Query Frame = 0
Query:   70 VRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTL----APKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGRGDHMRSVLVPDKNNDT-DIWGVCYWHLNRE-----FRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKG--LEEFDLFV-----------GAQDFWNAALLLAKHDPP-FVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYE------------------------MLDQDTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDF 535
            VR+SL VL  H +V++ E             +G     R    Y  D   ++ R RI   +     ++G+    ++  +   GR+    + +        PK  +   + A  +  +  ++ + +         RL +  + E QK    +      +    A   + D            R  ++   G+  R  +  + + D  DI    Y+ +N E     FRN   +   + R+N     QI++  L+   +K    +  D    + +H  ++     L + D+ +             Q+     L L K D   F+ +              +L    R +  E L+  +Y     RI R L  +G +EE  + +  M P K  RE L  +    IV  QEVP+S D+  A    YLW V     ++ L+  +Y+ + NL  + +                        + D D  +  + KK+  R   L  S +R+DQ VM+ RDF
Sbjct:   49 VRESLVVLIHHALVHFTEP-----------EEGV----REPTFYQADPQSIMMRLRIGPIMRVTEEQYGKEALNIIKLIFTNGRMRLPAIHQWVSDFDSKPKTKKSTYTTAFKRLAMAGLITALLPEHSRSSTDRLLIAQEKEAQKY--TITTAKDMKAIKLAAQAQIDAEFSMTEGIGMKRKAVDALAGEEKRMAVGKEDDVDHFDIDNTVYFAINYEKYNMIFRNNTIVDFATERINRTAG-QIVKAFLEHGKNKMKMIKEDDSPSASPMHIVNLVPSEILTQGDIVLQPDPTDPDKKPSYQEVVRGYLALLKTDQGGFIKSKDEMGANQFAVNFAKLRNTMRRRVFEGLLRDKYGVATCRIVRILLDKGKLEESQVQKLAMLPAKETREKLGLLNSKGIVEIQEVPKSADRAPART-IYLWYVPLEKCYQELLMDVYRAIGNLQQRKQEELKIRHRLVEKLSRRDVIENMDLLSDGDKAEMAQMKKVLER---LEVSKMRLDQIVMIFRDF 540          
BLAST of Gcaud3366.t1 vs. uniprot
Match: UPI0009E3708D (DNA-directed RNA polymerase III subunit RPC3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3708D)

HSP 1 Score: 66.2 bits (160), Expect = 8.500e-8
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 0
Query:  395 EELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTKDPEEQKKMKNRETLLIASI 522
            E ++  R+ S   RIFR L L+  ME+K + E  M P K  +E L++++ +R +  QE+PR++D    S  FYL+ V+   + R LIE  Y+ L NL      + +   + +E +++  +E  L A+I
Sbjct:  345 ESIVQERFGSRCFRIFRLLLLKKHMEQKQIGELAMIPSKDAKELLYKLFAERFIALQEIPRASDYA-PSRTFYLFSVDLRQLSRMLIEKSYQALGNL------MSRRQTEVQEHRRLVEKEERLEATI 465          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A1S8VLP1_9FUNG (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VLP1_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 4.460e-7
Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = 0
Query:  395 EELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTL--LNLFMQYEMLDQD-------------------TKDPEEQKKMKNRETLLIASILRVDQSVMVMRDF 535
            E +I  ++    RRI+R L L+  ++EK + ++ M   KV RE+L+ M+++  V  Q+VP++ D   AS  F+LW V+       L+   YKT   L L    E+ D+                    T D E  + + +    L  S +RVDQ VM++RDF
Sbjct:  355 ESIIQEKFGDVCRRIWRLLHLKNKLDEKQVGKQAMINNKVAREYLYLMFKEGFVYLQDVPKTMDHS-ASRTFFLWYVSLERTCEILLTNAYKTTHRLKLRRAKELSDRSLLLEKTNRSDVLAGEAQLTTGDQENIELLTSVVKKLYVSEMRVDQMVMLLRDF 515          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A293LF80_ORNER (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LF80_ORNER)

HSP 1 Score: 63.5 bits (153), Expect = 5.920e-7
Identity = 95/450 (21.11%), Postives = 179/450 (39.78%), Query Frame = 0
Query:   70 VRDSLAVLCQHGIVYYVERIVFDMTKRASLNDGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWC----------GKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVN---SELSVQILRVG-LQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLF--VGAQDFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTK 503
            V+++L VL  H  V Y +                  H +  + Y  + + +LY  R P Y   AR  +GE G  ++  +L  GRL  +Q+    L  +  +   S   V+    D+V++  +  C             K    ++ + E  K       + SK+     +  E++D           R ++E        S   PD   +   W V Y   +   R++  +  +  RV    SE+   ILR+   +++  +E    P    E  E+   +I    +E D +  V  +D  N  +   +    + + +             R++ +        ++  R+     RIFR L  +  +E+K + E  M P +  +E  ++M+Q++ ++T+E+PR+ D    S   YL+ V+   V   L+E  YK + N  ++   + Q+ K
Sbjct:   50 VKEALRVLFHHNFVEYKQ------------------HTKGFVDYSINSDRVLYMLRYPCYAYCARTLYGEAGEIIVEEILHSGRLCMSQVVGKVL--ERLQGSTSPDTVKNKFIDLVETHFL--CRVPYPDPSGDSSAKVPSLIMPEYEMYKIPEIKLYLLSKK-----IKQEEEDPNEPPQ----KRAKLE-------DSQKQPD---EAIYWRVNYRRFHTFMRDQMLVDAMERRVEVRGSEVIRAILRLSEKKMSAPRESLTSPVSRQEIFEILKKEISITQQELDSYLQVITEDVNNFVIKTEERGGMYRIDM------------QRVLLKLAEAHIVNVVQDRFGVKACRIFRLLLDKKFIEQKQIEELAMIPARDAKELTYQMFQEKFIMTKELPRTPDYA-PSRMIYLFYVDLTQVTHMLLEWCYKAVANSILRRAHVLQENK 445          
BLAST of Gcaud3366.t1 vs. uniprot
Match: A0A1E1XC86_9ACAR (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XC86_9ACAR)

HSP 1 Score: 60.8 bits (146), Expect = 4.130e-6
Identity = 84/415 (20.24%), Postives = 177/415 (42.65%), Query Frame = 0
Query:  105 SHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKRLSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDXXXXXXXXXXNRPRIEIGRGDH-MRSVLVPDKNNDTDIWGVCYWHLN-----REFRNECCLMVVSTRVNSELSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQDFWNAALLLAKHDPPFVLAVPPHA---PTHLKFVPGRLVAETRHKTAEELILSRYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVTQEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQDTKDPEEQKK 510
            +H R    Y  + + +L   R P Y+  A+  +G+ G  ++  +L  GRL  + + +  L          E  V+  L D+V++            L  +   +   E+  +         PT +  E+D            +       G+   + V   + + +       YW +N     +  R++  +  VS R+ ++   +++R  L+++ ++     P D   +A V   +I + L++ ++ +  Q+  +   L+A      V            +L+    RL+AE        ++  R+ +   RIFR L  +  +E+K + E  M P +  +E  ++M+Q++ ++ QE+PR+ D    S   YL+ V+   + R ++E  Y+ L NL ++ + + Q+ K   ++K+
Sbjct:   63 AHPRGFGKYSINADRVLCILRYPRYIYCAKLLYGDAGEFIIEEVLLNGRLCMSAVLQRVLERLQGSSTAEE--VKQKLADLVKTNF----------LCRVPYPDPNVEDTKI---------PTLILREEDMHEIPQIKLYLLKQNFSDTTGEPPAKKVKTENLDGEKQPDEKIYWRVNVDRFHQHLRDQSVVQAVSKRMGNKAG-EVVRTMLRLSETRS---HPKDTF-SAPVSRSEIHQALKK-EINISQQELDSYLSLIADDALLLVRRTDERGGMFSVNLEHA-MRLLAEA---VLTSIVQDRFGAKSCRIFRLLLEKKYIEQKQIEELAMIPARDAKEWTYKMFQEKFIMAQELPRTPDYA-PSRMIYLFHVDIPQLSRQVLEWCYQALTNLVLRRDHITQEYKRLVDKKQ 445          
The following BLAST results are available for this feature:
BLAST of Gcaud3366.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3J1S9_9FLOR8.330e-26566.43DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
R7Q9L1_CHOCR7.870e-16646.06DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
UPI001CF13B583.250e-1122.49DNA-directed RNA polymerase III subunit RPC3-like ... [more]
A0A2B4T2I7_STYPI1.780e-1021.83DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A6P8IH03_ACTTE4.740e-819.77DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A077WWG0_9FUNG6.580e-820.82DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
UPI0009E3708D8.500e-832.81DNA-directed RNA polymerase III subunit RPC3-like ... [more]
A0A1S8VLP1_9FUNG4.460e-730.86DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A293LF80_ORNER5.920e-721.11DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A1E1XC86_9ACAR4.130e-620.24DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 383..472
e-value: 8.9E-22
score: 78.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..92
e-value: 9.9E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..245
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 4..535
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 392..472

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_179_length_39915_cov_4.496535contigNODE_179_length_39915_cov_4.496535:25323..27020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3366.t1Gcaud3366.t1Gracilaria caudata M_176_S67 malemRNANODE_179_length_39915_cov_4.496535 25323..27020 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLAALTDLSSPYFEDV
CARNQKQHRVVGDDQRFNFVRDSLAVLCQHGIVYYVERIVFDMTKRASLN
DGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLE
RGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKR
LSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDDEDDYDDEDDNRPRI
EIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSE
LSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQ
DFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILS
RYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVT
QEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQ
DTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDFGPITAAYFPSKYEVL
DGYILHSKKRRRRAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3
IPR036390WH_DNA-bd_sf