Gcaud3366.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3366.t1
Unique Name	Gcaud3366.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_179_length_39915_cov_4.496535	contig	NODE_179_length_39915_cov_4.496535:25323..27020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706059.1
Preferred name	POLR3C
PFAMs	HTH_9,RNA_pol_Rpc82,TFIIE_alpha
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K03023
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG Module	M00181
GOs	GO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006359,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue	1.18e-17
EggNOG OGs	KOG2587@1\|root,KOG2587@2759\|Eukaryota
Description	DNA-directed 5'-3' RNA polymerase activity
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3366	Gcaud3366	Gracilaria caudata M_176_S67 male	gene	NODE_179_length_39915_cov_4.496535 25323..27020 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3366.t1.start1	Gcaud3366.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_179_length_39915_cov_4.496535 25323..25325 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3366.t1.CDS1	Gcaud3366.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_179_length_39915_cov_4.496535 25323..27020 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3366.t1.exon1	Gcaud3366.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_179_length_39915_cov_4.496535 25323..27020 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3366.t1.stop1	Gcaud3366.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_179_length_39915_cov_4.496535 27018..27020 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3366.t1	Gcaud3366.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_179_length_39915_cov_4.496535 25323..27020 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+
coding sequence from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+

mRNA sequence

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=566bp
MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLAALTDLSSPYFEDV
CARNQKQHRVVGDDQRFNFVRDSLAVLCQHGIVYYVERIVFDMTKRASLN
DGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLE
RGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKR
LSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDDEDDYDDEDDNRPRI
EIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSE
LSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQ
DFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILS
RYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVT
QEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQ
DTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDFGPITAAYFPSKYEVL
DGYILHSKKRRRRAA*

spliced messenger RNA

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGACAGCACGAGGCGCTCGCGTGTGCCATAGCGCGATACCATTT
CAAGCCCATCGTCGCCGAGGTGGTTCGTCTGCTCTGTCTTCATCCCGGCT
CCACTCTTGCCGCGCTTACCGACTTATCATCACCCTATTTCGAGGACGTT
TGCGCGCGCAATCAGAAGCAACACCGAGTTGTTGGCGATGACCAGCGTTT
CAACTTTGTGCGTGATTCGCTTGCGGTTTTATGTCAACATGGTATTGTGT
ACTACGTCGAGCGCATTGTGTTTGATATGACCAAGCGCGCTTCACTGAAT
GACGGCACATCATCACATCAACGGACGCGCATTCATTATTATTGCGATGT
CAATCTGCTGCTATATAGGCCCCGTATACCGCTGTATCTTGGTTTCGCAC
GCCGTCGTTTTGGAGAATTTGGTCATGCTGTGCTATCCGCTTTGTTGGAG
AGAGGACGTCTCACGTCCGCCCAGCTTTTCAAGTGCACATTGGCGCCGAA
GATGGCTGAGTTTGGTATATCCGAAGCCGCTGTCCAGGCCTGTCTGACTG
ATATGGTTCAATCCGGCGTCGTGCACTGGTGCGGAAAACGCAAGAAACGC
TTATCCGTTCTGGCCAAGCTCGAGAGGCAAAAAGAAGAGGCTGCTGTGGA
CATCGTAGGCTCAAAGCGACCTAATCCGACTGCCATGCattatgaagatg
acgatgatgaggatgactacgacgatgaggatgacaaCCGCCCTCGTATT
GAGATTGGCCGGGGTGATCATATGCGGTCCGTCCTTGTGCCGGACAAGAA
CAACGATACCGATATCTGGGGCGTGTGCTACTGGCATCTCAATCGCGAGT
TTAGAAACGAGTGCTGTCTCATGGTGGTTTCAACTCGAGTTAATAGCGAA
CTATCGGTACAAATACTGCGAGTCGGTTTGCAAATTGCATTGTCAAAAGA
GGATTGTCAACAACCTTCGGACGATATGGAAACCGCTGAGGTCCATACTG
ATGACATCAAGAAGGGCTTGGAAGAGTTTGATTTATTCGTTGGCGCACAA
GACTTTTGGAATGCCGCGCTGCTGCTTGCGAAGCATGACCCGCCGTTTGT
TTTGGCCGTTCCCCCGCATGCACCTACTCATCTCAAATTCGTCCCTGGAA
GATTGGTCGCGGAGACTCGCCACAAAACCGCTGAGGAATTGATCCTGAGC
CGATATGACAGCACTGGAAGACGCATCTTCCGAGCACTGGCTTTGGAAGG
TGCTATGGAGGAGAAAATGCTGGCTGAGAAATGCATGCGGCCATTGAAAG
TTGTGCGAGAACATCTGTTCCGTATGTATCAGGATCGCATTGTTGTTACT
CAAGAGGTGCCTCGTTCGAATGATCAGCAACGAGCAAGCAACTGGTTTTA
TCTGTGGAAGGTGAATACTTTTTCCGTTCATCGCAATTTGATCGAGGTGA
TGTACAAGACATTGCTGAACCTGTTTATGCAATATGAAATGTTAGACCAG
GACACAAAAGACCCCGAAGAACAGAAGAAAATGAAGAATCGCGAAACGCT
TCTCATCGCTAGTATTCTTAGAGTGGACCAATCTGTCATGGTTATGCGGG
ATTTTGGTCCAATCACTGCCGCTTACTTTCCTTCAAAGTATGAAGTACTT
GATGGGTACATACTACATAGCAAAAAACGGCGGCGACGGGCAGCATAA

protein sequence of Gcaud3366.t1

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLAALTDLSSPYFEDV
CARNQKQHRVVGDDQRFNFVRDSLAVLCQHGIVYYVERIVFDMTKRASLN
DGTSSHQRTRIHYYCDVNLLLYRPRIPLYLGFARRRFGEFGHAVLSALLE
RGRLTSAQLFKCTLAPKMAEFGISEAAVQACLTDMVQSGVVHWCGKRKKR
LSVLAKLERQKEEAAVDIVGSKRPNPTAMHYEDDDDEDDYDDEDDNRPRI
EIGRGDHMRSVLVPDKNNDTDIWGVCYWHLNREFRNECCLMVVSTRVNSE
LSVQILRVGLQIALSKEDCQQPSDDMETAEVHTDDIKKGLEEFDLFVGAQ
DFWNAALLLAKHDPPFVLAVPPHAPTHLKFVPGRLVAETRHKTAEELILS
RYDSTGRRIFRALALEGAMEEKMLAEKCMRPLKVVREHLFRMYQDRIVVT
QEVPRSNDQQRASNWFYLWKVNTFSVHRNLIEVMYKTLLNLFMQYEMLDQ
DTKDPEEQKKMKNRETLLIASILRVDQSVMVMRDFGPITAAYFPSKYEVL
DGYILHSKKRRRRAA*

mRNA from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+ (Gracilaria caudata M_176_S67 male)
ATGGTCCGACAGCACGAGGCGCTCGCGTGTGCCATAGCGCGATACCATTT
CAAGCCCATCGTCGCCGAGGTGGTTCGTCTGCTCTGTCTTCATCCCGGCT
CCACTCTTGCCGCGCTTACCGACTTATCATCACCCTATTTCGAGGACGTT
TGCGCGCGCAATCAGAAGCAACACCGAGTTGTTGGCGATGACCAGCGTTT
CAACTTTGTGCGTGATTCGCTTGCGGTTTTATGTCAACATGGTATTGTGT
ACTACGTCGAGCGCATTGTGTTTGATATGACCAAGCGCGCTTCACTGAAT
GACGGCACATCATCACATCAACGGACGCGCATTCATTATTATTGCGATGT
CAATCTGCTGCTATATAGGCCCCGTATACCGCTGTATCTTGGTTTCGCAC
GCCGTCGTTTTGGAGAATTTGGTCATGCTGTGCTATCCGCTTTGTTGGAG
AGAGGACGTCTCACGTCCGCCCAGCTTTTCAAGTGCACATTGGCGCCGAA
GATGGCTGAGTTTGGTATATCCGAAGCCGCTGTCCAGGCCTGTCTGACTG
ATATGGTTCAATCCGGCGTCGTGCACTGGTGCGGAAAACGCAAGAAACGC
TTATCCGTTCTGGCCAAGCTCGAGAGGCAAAAAGAAGAGGCTGCTGTGGA
CATCGTAGGCTCAAAGCGACCTAATCCGACTGCCATGCattatgaagatg
acgatgatgaggatgactacgacgatgaggatgacaaCCGCCCTCGTATT
GAGATTGGCCGGGGTGATCATATGCGGTCCGTCCTTGTGCCGGACAAGAA
CAACGATACCGATATCTGGGGCGTGTGCTACTGGCATCTCAATCGCGAGT
TTAGAAACGAGTGCTGTCTCATGGTGGTTTCAACTCGAGTTAATAGCGAA
CTATCGGTACAAATACTGCGAGTCGGTTTGCAAATTGCATTGTCAAAAGA
GGATTGTCAACAACCTTCGGACGATATGGAAACCGCTGAGGTCCATACTG
ATGACATCAAGAAGGGCTTGGAAGAGTTTGATTTATTCGTTGGCGCACAA
GACTTTTGGAATGCCGCGCTGCTGCTTGCGAAGCATGACCCGCCGTTTGT
TTTGGCCGTTCCCCCGCATGCACCTACTCATCTCAAATTCGTCCCTGGAA
GATTGGTCGCGGAGACTCGCCACAAAACCGCTGAGGAATTGATCCTGAGC
CGATATGACAGCACTGGAAGACGCATCTTCCGAGCACTGGCTTTGGAAGG
TGCTATGGAGGAGAAAATGCTGGCTGAGAAATGCATGCGGCCATTGAAAG
TTGTGCGAGAACATCTGTTCCGTATGTATCAGGATCGCATTGTTGTTACT
CAAGAGGTGCCTCGTTCGAATGATCAGCAACGAGCAAGCAACTGGTTTTA
TCTGTGGAAGGTGAATACTTTTTCCGTTCATCGCAATTTGATCGAGGTGA
TGTACAAGACATTGCTGAACCTGTTTATGCAATATGAAATGTTAGACCAG
GACACAAAAGACCCCGAAGAACAGAAGAAAATGAAGAATCGCGAAACGCT
TCTCATCGCTAGTATTCTTAGAGTGGACCAATCTGTCATGGTTATGCGGG
ATTTTGGTCCAATCACTGCCGCTTACTTTCCTTCAAAGTATGAAGTACTT
GATGGGTACATACTACATAGCAAAAAACGGCGGCGACGGGCAGCATAA

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+

>Gcaud3366.t1 ID=Gcaud3366.t1|Name=Gcaud3366.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1698bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:25323..27020+ (Gracilaria caudata M_176_S67 male)
ATGGTCCGACAGCACGAGGCGCTCGCGTGTGCCATAGCGCGATACCATTT
CAAGCCCATCGTCGCCGAGGTGGTTCGTCTGCTCTGTCTTCATCCCGGCT
CCACTCTTGCCGCGCTTACCGACTTATCATCACCCTATTTCGAGGACGTT
TGCGCGCGCAATCAGAAGCAACACCGAGTTGTTGGCGATGACCAGCGTTT
CAACTTTGTGCGTGATTCGCTTGCGGTTTTATGTCAACATGGTATTGTGT
ACTACGTCGAGCGCATTGTGTTTGATATGACCAAGCGCGCTTCACTGAAT
GACGGCACATCATCACATCAACGGACGCGCATTCATTATTATTGCGATGT
CAATCTGCTGCTATATAGGCCCCGTATACCGCTGTATCTTGGTTTCGCAC
GCCGTCGTTTTGGAGAATTTGGTCATGCTGTGCTATCCGCTTTGTTGGAG
AGAGGACGTCTCACGTCCGCCCAGCTTTTCAAGTGCACATTGGCGCCGAA
GATGGCTGAGTTTGGTATATCCGAAGCCGCTGTCCAGGCCTGTCTGACTG
ATATGGTTCAATCCGGCGTCGTGCACTGGTGCGGAAAACGCAAGAAACGC
TTATCCGTTCTGGCCAAGCTCGAGAGGCAAAAAGAAGAGGCTGCTGTGGA
CATCGTAGGCTCAAAGCGACCTAATCCGACTGCCATGCattatgaagatg
acgatgatgaggatgactacgacgatgaggatgacaaCCGCCCTCGTATT
GAGATTGGCCGGGGTGATCATATGCGGTCCGTCCTTGTGCCGGACAAGAA
CAACGATACCGATATCTGGGGCGTGTGCTACTGGCATCTCAATCGCGAGT
TTAGAAACGAGTGCTGTCTCATGGTGGTTTCAACTCGAGTTAATAGCGAA
CTATCGGTACAAATACTGCGAGTCGGTTTGCAAATTGCATTGTCAAAAGA
GGATTGTCAACAACCTTCGGACGATATGGAAACCGCTGAGGTCCATACTG
ATGACATCAAGAAGGGCTTGGAAGAGTTTGATTTATTCGTTGGCGCACAA
GACTTTTGGAATGCCGCGCTGCTGCTTGCGAAGCATGACCCGCCGTTTGT
TTTGGCCGTTCCCCCGCATGCACCTACTCATCTCAAATTCGTCCCTGGAA
GATTGGTCGCGGAGACTCGCCACAAAACCGCTGAGGAATTGATCCTGAGC
CGATATGACAGCACTGGAAGACGCATCTTCCGAGCACTGGCTTTGGAAGG
TGCTATGGAGGAGAAAATGCTGGCTGAGAAATGCATGCGGCCATTGAAAG
TTGTGCGAGAACATCTGTTCCGTATGTATCAGGATCGCATTGTTGTTACT
CAAGAGGTGCCTCGTTCGAATGATCAGCAACGAGCAAGCAACTGGTTTTA
TCTGTGGAAGGTGAATACTTTTTCCGTTCATCGCAATTTGATCGAGGTGA
TGTACAAGACATTGCTGAACCTGTTTATGCAATATGAAATGTTAGACCAG
GACACAAAAGACCCCGAAGAACAGAAGAAAATGAAGAATCGCGAAACGCT
TCTCATCGCTAGTATTCTTAGAGTGGACCAATCTGTCATGGTTATGCGGG
ATTTTGGTCCAATCACTGCCGCTTACTTTCCTTCAAAGTATGAAGTACTT
GATGGGTACATACTACATAGCAAAAAACGGCGGCGACGGGCAGCATAA