Gcaud3319.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3319.t1
Unique NameGcaud3319.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Homology
BLAST of Gcaud3319.t1 vs. uniprot
Match: A0A2V3IBP7_9FLOR (Oxalate oxidase GF-2.8 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBP7_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 1.040e-63
Identity = 113/177 (63.84%), Postives = 132/177 (74.58%), Query Frame = 0
Query:    2 TAAHTALLMLVLVCQLSVWTAVHASIPSQGSVTAAQTRNNLSDSDFCLDYEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQLATQLHPRGNEVINVVRGSARISFRFESDPRVAVNLRTVTNVVRAGRVTVIPQGLIHDVKCVSST-PCELLSVANSADPGFVVV 177
            +A H ALL+ VL    +  T  HA IPS+GS TA + RN  +DS F L Y E     FPDY +Q+LE Q F  LGAVD+QTRLLR +MQPGS+LATQLHPRGNEVI+VVRG+A+ISF FESDP +   LR VTNVVRA  V +IPQGL+HDV+CVS   PC LLSVANSADPGFVV+
Sbjct:    5 SAPHLALLLPVL----AFLTFSHARIPSRGSQTAFEVRNAFNDSAFRLPYAEARLSTFPDYSVQSLEAQQFPVLGAVDIQTRLLRIVMQPGSRLATQLHPRGNEVIHVVRGAAKISFTFESDPSLDTVLRRVTNVVRAREVALIPQGLVHDVECVSKVHPCILLSVANSADPGFVVL 177          
BLAST of Gcaud3319.t1 vs. uniprot
Match: A0A2V3IC12_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC12_9FLOR)

HSP 1 Score: 78.6 bits (192), Expect = 1.180e-15
Identity = 47/94 (50.00%), Postives = 57/94 (60.64%), Query Frame = 0
Query:    2 TAAHTALLMLVLVCQLSVWTAVHASIPSQGSVTAAQTRNNLSDSDFCLDYEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQL 95
            +A H ALL+ VL    +  T  HA IPS+GS TA + RN  +DS F L Y E     FPDY +Q+LE Q F  LGAVD+QTRLLR     G Q+
Sbjct:    5 SAPHLALLLPVL----AFLTFSHARIPSRGSQTAFEVRNAFNDSAFRLPYAEARLSTFPDYSVQSLEAQQFPVLGAVDIQTRLLRIRYAAGLQI 94          
BLAST of Gcaud3319.t1 vs. uniprot
Match: A0A811QVD6_9POAL (Germin-like protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QVD6_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 6.420e-7
Identity = 36/140 (25.71%), Postives = 68/140 (48.57%), Query Frame = 0
Query:   38 TRNNLSDSDFCLDYEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQLATQLHPRGNEVINVVRGSARISFRFESDPRVAVNLRTVTNVVRAGRVTVIPQGLIHDVKCVSSTPCELLSVANSADPGFVVV 177
            +++  S  D C  + + +Q ++    +  + V     L  + +    + F+  PG Q     HPRG+E++ V++G+  + F   +     +N   +T  +RAG V+V PQGLIH       TP   ++  +S +PG + +
Sbjct:   48 SKDIQSPVDSCALHIDVLQFMWAGSAVTPVAVSQIPGLNTLGISLARIDFV--PGGQNPPHTHPRGSEILTVIQGTLLVGFVTSNQ---LLNNTLITKQLRAGDVSVFPQGLIHFQLNNGRTPAVAIAALSSQNPGTITI 182          
The following BLAST results are available for this feature:
BLAST of Gcaud3319.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IBP7_9FLOR1.040e-6363.84Oxalate oxidase GF-2.8 n=2 Tax=Gracilariopsis chor... [more]
A0A2V3IC12_9FLOR1.180e-1550.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A811QVD6_9POAL6.420e-725.71Germin-like protein n=1 Tax=Miscanthus lutarioripa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001929GerminPRINTSPR00325GERMINcoord: 98..118
score: 35.11
coord: 135..155
score: 38.65
coord: 168..177
score: 24.13
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 82..173
e-value: 3.0E-10
score: 39.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 23..177
e-value: 7.7E-18
score: 66.6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 62..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_375_length_27991_cov_4.438244contigNODE_375_length_27991_cov_4.438244:22511..23044 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1Gcaud3319.t1Gracilaria caudata M_176_S67 malemRNANODE_375_length_27991_cov_4.438244 22511..23044 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MTAAHTALLMLVLVCQLSVWTAVHASIPSQGSVTAAQTRNNLSDSDFCLD
YEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQLATQLH
PRGNEVINVVRGSARISFRFESDPRVAVNLRTVTNVVRAGRVTVIPQGLI
HDVKCVSSTPCELLSVANSADPGFVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001929Germin
IPR006045Cupin_1
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin_sf